Wall clock time and date at job start Tue Mar 31 2020 11:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47092 * 2 1 4 4 C 1.52998 * 109.47014 * 240.00118 * 2 1 3 5 5 O 1.45200 * 109.46854 * 119.99872 * 2 1 3 6 6 C 1.34638 * 116.99980 * 60.00059 * 5 2 1 7 7 O 1.21514 * 120.00057 * 0.02562 * 6 5 2 8 8 N 1.34774 * 120.00093 * 179.97438 * 6 5 2 9 9 O 1.41603 * 120.00261 * 180.02562 * 8 6 5 10 10 C 1.42898 * 114.00025 * 180.02562 * 9 8 6 11 11 C 1.50700 * 109.46981 * 179.97438 * 10 9 8 12 12 O 1.20827 * 119.99945 * 0.02562 * 11 10 9 13 13 O 1.34222 * 120.00047 * 179.97438 * 11 10 9 14 14 C 1.45202 * 117.00083 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47352 * 180.02562 * 14 13 11 16 16 C 1.50706 * 115.54986 * 65.10179 * 15 14 13 17 17 H 1.07994 * 120.00031 * 266.11359 * 16 15 14 18 18 C 1.37878 * 119.99497 * 86.11060 * 16 15 14 19 19 N 1.31521 * 120.00296 * 353.70275 * 18 16 15 20 20 Si 1.86801 * 119.99921 * 173.70088 * 18 16 15 21 21 H 1.48499 * 109.46974 * 90.00184 * 20 18 16 22 22 H 1.48496 * 109.47200 * 210.00081 * 20 18 16 23 23 H 1.48497 * 109.46993 * 330.00604 * 20 18 16 24 24 C 1.53000 * 117.49708 * 279.44047 * 15 14 13 25 25 C 1.53001 * 117.50116 * 210.77601 * 15 14 13 26 26 H 1.08998 * 109.46908 * 300.00264 * 1 2 3 27 27 H 1.08999 * 109.46958 * 59.99909 * 1 2 3 28 28 H 1.09002 * 109.47324 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46826 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47086 * 300.00346 * 3 2 1 31 31 H 1.08997 * 109.46722 * 60.00005 * 3 2 1 32 32 H 1.09002 * 109.47033 * 300.00126 * 4 2 1 33 33 H 1.08999 * 109.47280 * 60.00171 * 4 2 1 34 34 H 1.08996 * 109.47014 * 180.02562 * 4 2 1 35 35 H 0.96996 * 119.99888 * 0.02562 * 8 6 5 36 36 H 1.08993 * 109.47539 * 59.99952 * 10 9 8 37 37 H 1.09001 * 109.46976 * 299.99620 * 10 9 8 38 38 H 1.09004 * 109.46987 * 299.99839 * 14 13 11 39 39 H 1.09004 * 109.47073 * 60.00079 * 14 13 11 40 40 H 0.96998 * 120.00160 * 179.97438 * 19 18 16 41 41 H 1.08999 * 117.50385 * 359.97438 * 24 15 14 42 42 H 1.09006 * 117.49998 * 145.02263 * 24 15 14 43 43 H 1.09002 * 117.49722 * 214.97551 * 25 15 14 44 44 H 1.08993 * 117.49699 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9516 -2.5097 0.5036 8 7 2.0679 -2.6657 2.4167 9 8 1.6879 -4.0203 2.5771 10 6 2.1987 -4.6306 3.7640 11 6 1.7342 -6.0626 3.8323 12 8 1.0376 -6.5143 2.9544 13 8 2.0952 -6.8366 4.8678 14 6 1.6116 -8.2057 4.8675 15 6 2.1213 -8.9269 6.1169 16 6 1.6003 -8.4006 7.4294 17 1 2.1670 -7.6636 7.9788 18 6 0.3999 -8.8600 7.9285 19 7 -0.3497 -9.6621 7.2043 20 14 -0.1617 -8.3431 9.6335 21 1 -0.9641 -7.0976 9.5339 22 1 -0.9922 -9.4206 10.2289 23 1 1.0246 -8.1002 10.4929 24 6 3.5550 -9.4605 6.0890 25 6 2.3746 -10.4320 6.0099 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 -1.7489 -1.2493 33 1 1.6767 -0.2074 -2.1392 34 1 3.1300 -0.7216 -1.2490 35 1 2.6275 -2.2368 3.0829 36 1 1.8345 -4.0889 4.6368 37 1 3.2882 -4.6021 3.7471 38 1 0.5215 -8.2060 4.8676 39 1 1.9750 -8.7192 3.9774 40 1 -1.1940 -9.9855 7.5556 41 1 4.1349 -9.2981 5.1805 42 1 4.1211 -9.4313 7.0200 43 1 2.1647 -11.0414 6.8889 44 1 2.1777 -10.9085 5.0496 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000923135685.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:51 Heat of formation + Delta-G solvation = -147.671745 kcal Electronic energy + Delta-G solvation = -26108.651296 eV Core-core repulsion = 22029.497512 eV Total energy + Delta-G solvation = -4079.153783 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.85022 -41.54039 -39.35478 -38.55834 -37.62220 -37.01017 -35.32957 -34.02767 -33.30481 -30.10522 -28.35535 -28.27038 -28.15447 -27.13009 -23.94510 -23.04631 -22.42533 -21.23764 -21.18832 -19.58845 -19.43319 -18.44732 -18.19096 -17.96497 -17.36426 -17.33778 -17.11415 -16.63243 -16.14440 -15.87974 -15.56767 -15.29487 -14.90622 -14.65529 -14.38915 -14.04806 -13.75424 -13.51127 -13.34037 -13.22976 -12.92435 -12.91907 -12.87225 -12.84555 -12.69861 -12.39009 -12.37308 -12.28689 -12.09223 -11.80615 -11.76156 -11.46392 -11.44040 -11.20893 -10.78667 -10.50315 -10.30569 -10.10659 -8.14605 -6.26170 -0.26817 1.03895 1.41972 1.44087 1.53883 1.58324 1.62329 2.41929 2.57583 3.14451 3.25033 3.39882 3.70297 3.74755 3.79627 3.94430 3.98342 4.00699 4.11595 4.35830 4.45262 4.48462 4.63681 4.63840 4.72060 4.78956 4.79274 4.86452 4.91339 4.97489 5.11405 5.18444 5.26063 5.30645 5.32246 5.39895 5.55231 5.60381 5.61771 5.74472 6.06976 6.33948 6.65114 6.80154 7.25001 7.43162 8.94171 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.023133 B = 0.002276 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.108953 B =12300.408474 C =12848.389995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.127 3.873 3 C -0.133 4.133 4 C -0.184 4.184 5 O -0.349 6.349 6 C 0.665 3.335 7 O -0.583 6.583 8 N -0.563 5.563 9 O -0.129 6.129 10 C 0.046 3.954 11 C 0.460 3.540 12 O -0.540 6.540 13 O -0.333 6.333 14 C 0.128 3.872 15 C 0.002 3.998 16 C -0.503 4.503 17 H 0.061 0.939 18 C 0.020 3.980 19 N -0.911 5.911 20 Si 0.954 3.046 21 H -0.278 1.278 22 H -0.286 1.286 23 H -0.263 1.263 24 C -0.173 4.173 25 C -0.148 4.148 26 H 0.066 0.934 27 H 0.094 0.906 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.105 0.895 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.437 0.563 36 H 0.143 0.857 37 H 0.153 0.847 38 H 0.041 0.959 39 H 0.052 0.948 40 H 0.261 0.739 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.070 0.930 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.736 22.285 -10.701 26.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.091 3.909 3 C -0.190 4.190 4 C -0.241 4.241 5 O -0.264 6.264 6 C 0.419 3.581 7 O -0.471 6.471 8 N -0.274 5.274 9 O -0.135 6.135 10 C -0.030 4.030 11 C 0.303 3.697 12 O -0.431 6.431 13 O -0.248 6.248 14 C 0.055 3.945 15 C 0.002 3.998 16 C -0.540 4.540 17 H 0.079 0.921 18 C -0.180 4.180 19 N -0.549 5.549 20 Si 0.779 3.221 21 H -0.204 1.204 22 H -0.212 1.212 23 H -0.187 1.187 24 C -0.210 4.210 25 C -0.186 4.186 26 H 0.085 0.915 27 H 0.113 0.887 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.123 0.877 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.113 0.887 34 H 0.087 0.913 35 H 0.282 0.718 36 H 0.160 0.840 37 H 0.170 0.830 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.111 0.889 42 H 0.107 0.893 43 H 0.089 0.911 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.902 21.727 -11.521 25.831 hybrid contribution -0.730 -0.545 1.152 1.468 sum 7.173 21.182 -10.369 24.651 Atomic orbital electron populations 1.22529 0.94138 1.03514 1.04048 1.22585 0.94579 0.92806 0.80923 1.21903 1.02785 0.89659 1.04680 1.22519 1.02065 1.02004 0.97537 1.86314 1.71508 1.20494 1.48094 1.17455 0.78720 0.81144 0.80762 1.90961 1.41507 1.70865 1.43787 1.45116 1.56158 1.00735 1.25344 1.90723 1.72551 1.07533 1.42688 1.22366 1.03662 0.86839 0.90180 1.23420 0.77434 0.89408 0.79476 1.90705 1.36619 1.75652 1.40091 1.86464 1.68669 1.25800 1.43872 1.22646 0.97752 0.76348 0.97783 1.18892 0.95457 0.92883 0.92600 1.20655 1.05292 1.24204 1.03890 0.92113 1.25768 0.96476 0.94962 1.00799 1.70113 1.12410 1.34326 1.38028 0.85626 0.78396 0.77710 0.80366 1.20406 1.21163 1.18710 1.23041 0.91136 1.04915 1.01956 1.22491 1.02721 0.92923 1.00453 0.91458 0.88713 0.92612 0.90636 0.87693 0.90783 0.92578 0.88736 0.91289 0.71778 0.83952 0.83013 0.94057 0.92990 0.93048 0.88861 0.89331 0.91139 0.90533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.18 8.37 71.98 0.60 -2.58 16 2 C 0.13 2.03 1.13 -10.79 -0.01 2.01 16 3 C -0.13 -1.11 8.85 71.98 0.64 -0.47 16 4 C -0.18 -3.07 8.37 71.98 0.60 -2.47 16 5 O -0.35 -6.86 9.94 -55.48 -0.55 -7.41 16 6 C 0.67 17.21 8.20 129.79 1.06 18.27 16 7 O -0.58 -19.87 12.29 25.79 0.32 -19.55 16 8 N -0.56 -12.15 6.39 -297.02 -1.90 -14.05 16 9 O -0.13 -3.76 10.64 -11.16 -0.12 -3.88 16 10 C 0.05 1.06 6.82 71.24 0.49 1.55 16 11 C 0.46 16.81 8.03 71.24 0.57 17.38 16 12 O -0.54 -24.54 16.25 28.39 0.46 -24.08 16 13 O -0.33 -13.53 10.16 -51.34 -0.52 -14.05 16 14 C 0.13 6.00 5.29 71.98 0.38 6.38 16 15 C 0.00 0.10 1.62 -52.92 -0.09 0.02 16 16 C -0.50 -26.58 8.78 25.60 0.22 -26.36 16 17 H 0.06 3.16 7.82 -2.91 -0.02 3.14 16 18 C 0.02 1.09 5.38 84.65 0.46 1.54 16 19 N -0.91 -51.74 12.88 21.45 0.28 -51.46 16 20 Si 0.95 42.39 29.54 68.60 2.03 44.42 16 21 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 22 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 24 C -0.17 -6.96 9.96 30.62 0.30 -6.65 16 25 C -0.15 -6.69 9.37 30.62 0.29 -6.40 16 26 H 0.07 1.05 8.14 -2.39 -0.02 1.04 16 27 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.05 1.39 5.88 -2.39 -0.01 1.37 16 29 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.06 1.36 5.88 -2.39 -0.01 1.35 16 33 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.44 5.17 8.65 -92.71 -0.80 4.37 16 36 H 0.14 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.15 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.04 2.21 8.13 -2.39 -0.02 2.19 16 39 H 0.05 2.28 8.09 -2.38 -0.02 2.26 16 40 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 41 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 42 H 0.09 3.43 8.14 -2.38 -0.02 3.41 16 43 H 0.07 3.40 8.14 -2.39 -0.02 3.38 16 44 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -75.80 378.19 5.72 -70.09 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: 0.21 Total: 17.76 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: 5.52 Total: 2.21 kcal Atomic # 7 Polarization: -63.89 SS G_CDS: -1.62 Total: -65.51 kcal Atomic # 8 Polarization: -68.55 SS G_CDS: -0.41 Total: -68.97 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -75.80 5.72 -70.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923135685.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.587 kcal (2) G-P(sol) polarization free energy of solvation -75.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds