Wall clock time and date at job start Tue Mar 31 2020 10:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35236 * 126.06872 * 2 1 4 4 C 1.40435 * 107.86847 * 179.88488 * 3 2 1 5 5 N 1.40063 * 125.97408 * 180.12019 * 4 3 2 6 6 C 1.34772 * 120.00309 * 0.28691 * 5 4 3 7 7 O 1.21766 * 120.00108 * 0.02562 * 6 5 4 8 8 C 1.41721 * 120.00213 * 180.02562 * 6 5 4 9 9 C 1.35186 * 120.00162 * 186.82009 * 8 6 5 10 10 C 1.46783 * 120.00295 * 7.30122 * 9 8 6 11 11 C 1.36741 * 126.24699 * 228.93399 * 10 9 8 12 12 N 1.36068 * 106.71906 * 179.90499 * 11 10 9 13 13 C 1.46497 * 126.17768 * 180.13632 * 12 11 10 14 14 C 1.35850 * 107.64286 * 0.35804 * 12 11 10 15 15 N 1.30183 * 109.10878 * 359.77197 * 14 12 11 16 16 N 1.31240 * 108.04203 * 0.38383 * 4 3 2 17 17 N 1.34974 * 126.06904 * 180.31608 * 2 1 3 18 18 C 1.46503 * 125.97010 * 359.95211 * 17 2 1 19 19 C 1.50698 * 109.47169 * 90.00577 * 18 17 2 20 20 H 1.08003 * 119.99815 * 359.97438 * 19 18 17 21 21 C 1.37876 * 120.00061 * 180.02562 * 19 18 17 22 22 N 1.31519 * 119.99778 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 120.00192 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.47516 * 89.99969 * 23 21 19 25 25 H 1.48505 * 109.47274 * 210.00368 * 23 21 19 26 26 H 1.48506 * 109.46989 * 329.99983 * 23 21 19 27 27 H 1.08994 * 109.46767 * 269.68688 * 1 2 3 28 28 H 1.09001 * 109.47212 * 149.68366 * 1 2 3 29 29 H 1.09000 * 109.46677 * 29.68742 * 1 2 3 30 30 H 1.07999 * 126.06648 * 0.02562 * 3 2 1 31 31 H 0.97003 * 119.99422 * 180.29118 * 5 4 3 32 32 H 1.08008 * 119.99311 * 6.81625 * 8 6 5 33 33 H 1.08004 * 119.99805 * 187.30390 * 9 8 6 34 34 H 1.07999 * 126.64394 * 0.03436 * 11 10 9 35 35 H 1.08996 * 109.47364 * 270.23655 * 13 12 11 36 36 H 1.09003 * 109.47149 * 30.24062 * 13 12 11 37 37 H 1.09005 * 109.47233 * 150.23693 * 13 12 11 38 38 H 1.07996 * 125.44744 * 179.74464 * 14 12 11 39 39 H 1.09005 * 109.47167 * 210.00079 * 18 17 2 40 40 H 1.09000 * 109.47546 * 330.00121 * 18 17 2 41 41 H 0.97005 * 119.99782 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6373 0.6545 0.0027 5 7 4.7729 1.4743 0.0059 6 6 4.6362 2.8151 0.0126 7 8 3.5253 3.3138 0.0162 8 6 5.7853 3.6446 0.0153 9 6 5.6531 4.9820 0.1609 10 6 4.3411 5.5600 0.4759 11 6 3.7474 6.6136 -0.1623 12 7 2.5471 6.8139 0.4463 13 6 1.5603 7.8384 0.0961 14 6 2.4311 5.8954 1.4405 15 7 3.4980 5.1496 1.4582 16 7 3.6337 -0.6579 -0.0041 17 7 2.3017 -1.0910 -0.0060 18 6 1.8499 -2.4846 -0.0127 19 6 1.6942 -2.9554 -1.4358 20 1 1.9097 -2.2835 -2.2535 21 6 1.2755 -4.2434 -1.6939 22 7 1.1391 -4.6540 -2.9359 23 14 0.9020 -5.4052 -0.2797 24 1 -0.5286 -5.2810 0.0984 25 1 1.1838 -6.8018 -0.6988 26 1 1.7541 -5.0566 0.8855 27 1 -0.3633 -0.0056 1.0276 28 1 -0.3634 -0.8871 -0.5187 29 1 -0.3633 0.8928 -0.5090 30 1 1.9719 2.1210 0.0004 31 1 5.6578 1.0770 0.0034 32 1 6.7666 3.2080 -0.0989 33 1 6.5129 5.6254 0.0455 34 1 4.1520 7.1763 -0.9906 35 1 1.7611 8.7460 0.6653 36 1 1.6254 8.0563 -0.9700 37 1 0.5600 7.4753 0.3322 38 1 1.5888 5.7995 2.1095 39 1 2.5848 -3.1073 0.4975 40 1 0.8916 -2.5585 0.5014 41 1 0.8449 -5.5604 -3.1175 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935182795.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:45 Heat of formation + Delta-G solvation = 150.055860 kcal Electronic energy + Delta-G solvation = -25263.608861 eV Core-core repulsion = 21569.259937 eV Total energy + Delta-G solvation = -3694.348923 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.87376 -40.61577 -39.20699 -35.05422 -34.22085 -33.24670 -32.83525 -31.40602 -31.01643 -29.32194 -27.38925 -26.79945 -26.28261 -24.33645 -22.37846 -21.36204 -21.13878 -19.87974 -19.60791 -18.52120 -17.39212 -17.05932 -16.46515 -15.87938 -15.71493 -15.22651 -14.95793 -14.59225 -14.27564 -14.08896 -13.92520 -13.59382 -13.50950 -13.12463 -12.99853 -12.83481 -12.51799 -12.32835 -12.28321 -12.17920 -11.88589 -11.47831 -11.08488 -10.75504 -10.47621 -10.27269 -9.93197 -9.85472 -9.75199 -9.49038 -9.36919 -9.10492 -8.74543 -8.09625 -7.83555 -7.30009 -6.22391 -4.24967 1.00543 2.09144 2.71369 2.76781 3.02976 3.18255 3.26078 3.27180 3.27541 3.43946 4.02885 4.04213 4.25439 4.42659 4.54744 4.77341 4.80238 4.95440 5.05448 5.05651 5.06285 5.32947 5.48181 5.50034 5.74019 5.96222 6.03475 6.09512 6.12220 6.20848 6.35906 6.47923 6.56555 6.68387 6.71423 6.75607 6.91037 7.14853 7.34375 7.60244 7.82311 7.97115 8.11838 8.37401 8.59221 8.73612 8.84228 9.33296 10.90222 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.023780 B = 0.002828 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.167887 B = 9897.739321 C =10536.069981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.090 3.910 3 C -0.282 4.282 4 C 0.275 3.725 5 N -0.634 5.634 6 C 0.548 3.452 7 O -0.492 6.492 8 C -0.202 4.202 9 C 0.023 3.977 10 C 0.020 3.980 11 C -0.033 4.033 12 N -0.467 5.467 13 C 0.075 3.925 14 C 0.183 3.817 15 N -0.436 5.436 16 N -0.323 5.323 17 N -0.320 5.320 18 C 0.233 3.767 19 C -0.539 4.539 20 H 0.080 0.920 21 C 0.078 3.922 22 N -0.888 5.888 23 Si 0.873 3.127 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.263 1.263 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.160 0.840 31 H 0.407 0.593 32 H 0.133 0.867 33 H 0.139 0.861 34 H 0.172 0.828 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.200 0.800 39 H 0.049 0.951 40 H 0.044 0.956 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.955 25.270 7.308 26.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.041 4.041 3 C -0.312 4.312 4 C 0.022 3.978 5 N -0.282 5.282 6 C 0.337 3.663 7 O -0.366 6.366 8 C -0.224 4.224 9 C 0.002 3.998 10 C -0.107 4.107 11 C -0.168 4.168 12 N -0.151 5.151 13 C -0.068 4.068 14 C -0.100 4.100 15 N -0.152 5.152 16 N -0.154 5.154 17 N -0.102 5.102 18 C 0.113 3.887 19 C -0.577 4.577 20 H 0.099 0.901 21 C -0.126 4.126 22 N -0.525 5.525 23 Si 0.699 3.301 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.188 1.188 27 H 0.088 0.912 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.177 0.823 31 H 0.242 0.758 32 H 0.151 0.849 33 H 0.157 0.843 34 H 0.190 0.810 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.105 0.895 38 H 0.217 0.783 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.819 23.759 7.705 25.267 hybrid contribution -0.351 0.229 -0.157 0.448 sum 3.467 23.988 7.548 25.386 Atomic orbital electron populations 1.20370 0.88095 1.03939 1.02280 1.21034 0.94767 0.87118 1.01185 1.21258 0.89789 0.99654 1.20537 1.18993 0.87595 0.89402 1.01839 1.42533 1.07075 1.05383 1.73203 1.17078 0.90522 0.80978 0.77737 1.90807 1.26518 1.73080 1.46154 1.21943 0.98455 0.94553 1.07484 1.21496 0.93461 0.93947 0.90901 1.19268 0.96350 0.96375 0.98696 1.22559 0.88676 1.02561 1.02955 1.45299 1.15495 1.27216 1.27061 1.21995 0.91902 0.90464 1.02423 1.25009 1.00415 0.90161 0.94428 1.70705 1.01525 1.22187 1.20830 1.77252 0.99208 1.08856 1.30081 1.48451 1.01368 1.06840 1.53545 1.19947 0.95187 0.73983 0.99551 1.21207 1.47073 0.98996 0.90455 0.90145 1.24814 0.94539 0.97464 0.95769 1.69883 1.45855 1.18302 1.18477 0.86900 0.79415 0.80960 0.82872 1.19644 1.20534 1.18758 0.91230 0.89979 0.90624 0.82288 0.75784 0.84913 0.84293 0.81048 0.90807 0.89887 0.89483 0.78322 0.93300 0.93808 0.92180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.56 9.89 36.00 0.36 -1.20 16 2 C 0.09 1.96 6.92 -82.28 -0.57 1.39 16 3 C -0.28 -6.12 9.52 -39.82 -0.38 -6.50 16 4 C 0.28 5.96 8.11 -154.46 -1.25 4.70 16 5 N -0.63 -10.86 5.43 -13.72 -0.07 -10.93 16 6 C 0.55 8.86 7.39 -14.93 -0.11 8.75 16 7 O -0.49 -9.26 9.75 5.13 0.05 -9.21 16 8 C -0.20 -2.32 9.85 -39.34 -0.39 -2.71 16 9 C 0.02 0.24 10.18 -37.22 -0.38 -0.14 16 10 C 0.02 0.26 5.00 -83.20 -0.42 -0.16 16 11 C -0.03 -0.34 11.53 -16.21 -0.19 -0.52 16 12 N -0.47 -4.36 3.14 -125.48 -0.39 -4.76 16 13 C 0.08 0.35 11.16 59.85 0.67 1.02 16 14 C 0.18 2.13 12.55 -89.90 -1.13 1.00 16 15 N -0.44 -6.48 9.07 -11.10 -0.10 -6.59 16 16 N -0.32 -7.79 12.59 31.43 0.40 -7.40 16 17 N -0.32 -7.80 3.59 -58.32 -0.21 -8.01 16 18 C 0.23 5.81 4.88 -5.19 -0.03 5.79 16 19 C -0.54 -15.50 9.94 -34.44 -0.34 -15.85 16 20 H 0.08 2.62 8.06 -52.48 -0.42 2.19 16 21 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 22 N -0.89 -26.84 13.96 55.43 0.77 -26.06 16 23 Si 0.87 20.57 27.47 -169.99 -4.67 15.90 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.26 -5.97 6.54 56.52 0.37 -5.60 16 27 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.08 1.54 7.71 -51.93 -0.40 1.14 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.16 3.42 5.90 -52.49 -0.31 3.11 16 31 H 0.41 5.69 8.78 -40.82 -0.36 5.34 16 32 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 33 H 0.14 0.85 8.06 -52.48 -0.42 0.42 16 34 H 0.17 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.20 1.69 8.06 -52.49 -0.42 1.27 16 39 H 0.05 1.23 7.20 -51.93 -0.37 0.86 16 40 H 0.04 1.01 7.07 -51.93 -0.37 0.64 16 41 H 0.27 7.50 8.31 -40.82 -0.34 7.17 16 LS Contribution 354.13 15.07 5.34 5.34 Total: -1.00 -38.72 354.13 -8.35 -47.07 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -5.20 Total: 6.95 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -4.25 Total: -2.30 kcal Atomic # 7 Polarization: -64.13 SS G_CDS: 0.39 Total: -63.74 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.05 Total: -9.21 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.67 Total: 15.90 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -38.72 -8.35 -47.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935182795.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.121 kcal (2) G-P(sol) polarization free energy of solvation -38.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds