Wall clock time and date at job start Tue Mar 31 2020 10:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35236 * 126.06872 * 2 1 4 4 C 1.40435 * 107.86847 * 179.88488 * 3 2 1 5 5 N 1.40063 * 125.97408 * 180.12019 * 4 3 2 6 6 C 1.34772 * 120.00309 * 0.28691 * 5 4 3 7 7 O 1.21766 * 120.00108 * 0.02562 * 6 5 4 8 8 C 1.41721 * 120.00213 * 180.02562 * 6 5 4 9 9 C 1.35186 * 120.00162 * 186.82009 * 8 6 5 10 10 C 1.46783 * 120.00295 * 7.30122 * 9 8 6 11 11 C 1.36741 * 126.24699 * 228.93399 * 10 9 8 12 12 N 1.36068 * 106.71906 * 179.90499 * 11 10 9 13 13 C 1.46497 * 126.17768 * 180.13632 * 12 11 10 14 14 C 1.35850 * 107.64286 * 0.35804 * 12 11 10 15 15 N 1.30183 * 109.10878 * 359.77197 * 14 12 11 16 16 N 1.31240 * 108.04203 * 0.38383 * 4 3 2 17 17 N 1.34974 * 126.06904 * 180.31608 * 2 1 3 18 18 C 1.46503 * 125.97010 * 359.95211 * 17 2 1 19 19 C 1.50698 * 109.47169 * 90.00577 * 18 17 2 20 20 H 1.08003 * 119.99815 * 359.97438 * 19 18 17 21 21 C 1.37876 * 120.00061 * 180.02562 * 19 18 17 22 22 N 1.31519 * 119.99778 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 120.00192 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.47516 * 89.99969 * 23 21 19 25 25 H 1.48505 * 109.47274 * 210.00368 * 23 21 19 26 26 H 1.48506 * 109.46989 * 329.99983 * 23 21 19 27 27 H 1.08994 * 109.46767 * 269.68688 * 1 2 3 28 28 H 1.09001 * 109.47212 * 149.68366 * 1 2 3 29 29 H 1.09000 * 109.46677 * 29.68742 * 1 2 3 30 30 H 1.07999 * 126.06648 * 0.02562 * 3 2 1 31 31 H 0.97003 * 119.99422 * 180.29118 * 5 4 3 32 32 H 1.08008 * 119.99311 * 6.81625 * 8 6 5 33 33 H 1.08004 * 119.99805 * 187.30390 * 9 8 6 34 34 H 1.07999 * 126.64394 * 0.03436 * 11 10 9 35 35 H 1.08996 * 109.47364 * 270.23655 * 13 12 11 36 36 H 1.09003 * 109.47149 * 30.24062 * 13 12 11 37 37 H 1.09005 * 109.47233 * 150.23693 * 13 12 11 38 38 H 1.07996 * 125.44744 * 179.74464 * 14 12 11 39 39 H 1.09005 * 109.47167 * 210.00079 * 18 17 2 40 40 H 1.09000 * 109.47546 * 330.00121 * 18 17 2 41 41 H 0.97005 * 119.99782 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6373 0.6545 0.0027 5 7 4.7729 1.4743 0.0059 6 6 4.6362 2.8151 0.0126 7 8 3.5253 3.3138 0.0162 8 6 5.7853 3.6446 0.0153 9 6 5.6531 4.9820 0.1609 10 6 4.3411 5.5600 0.4759 11 6 3.7474 6.6136 -0.1623 12 7 2.5471 6.8139 0.4463 13 6 1.5603 7.8384 0.0961 14 6 2.4311 5.8954 1.4405 15 7 3.4980 5.1496 1.4582 16 7 3.6337 -0.6579 -0.0041 17 7 2.3017 -1.0910 -0.0060 18 6 1.8499 -2.4846 -0.0127 19 6 1.6942 -2.9554 -1.4358 20 1 1.9097 -2.2835 -2.2535 21 6 1.2755 -4.2434 -1.6939 22 7 1.1391 -4.6540 -2.9359 23 14 0.9020 -5.4052 -0.2797 24 1 -0.5286 -5.2810 0.0984 25 1 1.1838 -6.8018 -0.6988 26 1 1.7541 -5.0566 0.8855 27 1 -0.3633 -0.0056 1.0276 28 1 -0.3634 -0.8871 -0.5187 29 1 -0.3633 0.8928 -0.5090 30 1 1.9719 2.1210 0.0004 31 1 5.6578 1.0770 0.0034 32 1 6.7666 3.2080 -0.0989 33 1 6.5129 5.6254 0.0455 34 1 4.1520 7.1763 -0.9906 35 1 1.7611 8.7460 0.6653 36 1 1.6254 8.0563 -0.9700 37 1 0.5600 7.4753 0.3322 38 1 1.5888 5.7995 2.1095 39 1 2.5848 -3.1073 0.4975 40 1 0.8916 -2.5585 0.5014 41 1 0.8449 -5.5604 -3.1175 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935182795.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:44 Heat of formation + Delta-G solvation = 124.200709 kcal Electronic energy + Delta-G solvation = -25264.730024 eV Core-core repulsion = 21569.259937 eV Total energy + Delta-G solvation = -3695.470087 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.66259 -42.23595 -40.52252 -36.39341 -35.32803 -35.07798 -33.77087 -33.05484 -32.78875 -30.17852 -29.03346 -27.88878 -27.60291 -25.55028 -24.16667 -22.50653 -21.89568 -21.24946 -21.15235 -19.70398 -19.23791 -18.35277 -17.72525 -17.22498 -16.85426 -16.51897 -16.36232 -16.02548 -15.42399 -15.38383 -15.01723 -14.83230 -14.69206 -14.50227 -14.21512 -13.88009 -13.76458 -13.65156 -13.49185 -13.39509 -13.23571 -13.04712 -12.81714 -12.55319 -12.25476 -11.84645 -11.52517 -11.31881 -11.10315 -10.90252 -10.82273 -10.43290 -10.04975 -9.54462 -9.05983 -8.85549 -8.41489 -6.52705 0.10735 1.05374 1.32757 1.33789 1.35021 1.45801 1.52894 1.87512 2.11338 2.26205 2.44509 2.52761 2.74552 2.90624 3.76541 3.79914 4.02851 4.10533 4.16064 4.17603 4.34144 4.44294 4.51045 4.53327 4.62516 4.70804 4.73657 4.76499 4.84583 4.87029 5.00703 5.14875 5.22404 5.23855 5.25412 5.41382 5.51091 5.92438 5.94947 6.04756 6.38096 6.42208 6.44401 6.51706 7.06783 7.11498 7.31411 7.36258 8.75385 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.023780 B = 0.002828 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.167887 B = 9897.739321 C =10536.069981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.086 3.914 3 C -0.294 4.294 4 C 0.280 3.720 5 N -0.631 5.631 6 C 0.541 3.459 7 O -0.522 6.522 8 C -0.227 4.227 9 C 0.046 3.954 10 C -0.025 4.025 11 C -0.024 4.024 12 N -0.464 5.464 13 C 0.069 3.931 14 C 0.166 3.834 15 N -0.487 5.487 16 N -0.363 5.363 17 N -0.345 5.345 18 C 0.243 3.757 19 C -0.551 4.551 20 H 0.022 0.978 21 C 0.021 3.979 22 N -0.938 5.938 23 Si 0.952 3.048 24 H -0.249 1.249 25 H -0.276 1.276 26 H -0.246 1.246 27 H 0.100 0.900 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.161 0.839 31 H 0.420 0.580 32 H 0.169 0.831 33 H 0.186 0.814 34 H 0.205 0.795 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.217 0.783 39 H 0.048 0.952 40 H 0.071 0.929 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.838 26.960 8.722 28.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.044 4.044 3 C -0.325 4.325 4 C 0.026 3.974 5 N -0.282 5.282 6 C 0.333 3.667 7 O -0.397 6.397 8 C -0.249 4.249 9 C 0.026 3.974 10 C -0.152 4.152 11 C -0.160 4.160 12 N -0.146 5.146 13 C -0.072 4.072 14 C -0.118 4.118 15 N -0.204 5.204 16 N -0.194 5.194 17 N -0.128 5.128 18 C 0.123 3.877 19 C -0.589 4.589 20 H 0.040 0.960 21 C -0.178 4.178 22 N -0.576 5.576 23 Si 0.773 3.227 24 H -0.173 1.173 25 H -0.202 1.202 26 H -0.170 1.170 27 H 0.119 0.881 28 H 0.087 0.913 29 H 0.114 0.886 30 H 0.178 0.822 31 H 0.257 0.743 32 H 0.186 0.814 33 H 0.203 0.797 34 H 0.222 0.778 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.234 0.766 39 H 0.066 0.934 40 H 0.089 0.911 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.709 25.506 9.118 27.340 hybrid contribution -0.324 -0.023 -0.691 0.764 sum 3.384 25.483 8.427 27.053 Atomic orbital electron populations 1.20507 0.85230 1.04256 1.04343 1.21750 0.96666 0.86447 0.99499 1.21383 0.90111 0.99648 1.21338 1.19392 0.89207 0.89160 0.99673 1.42771 1.06472 1.05579 1.73337 1.17970 0.91742 0.80561 0.76440 1.90780 1.28104 1.73314 1.47515 1.22034 0.98079 0.94477 1.10271 1.22115 0.93990 0.93982 0.87323 1.19856 0.97705 0.97973 0.99624 1.23118 0.88512 1.01552 1.02804 1.45574 1.15902 1.27181 1.25965 1.22309 0.91321 0.89994 1.03625 1.25376 1.00432 0.90577 0.95384 1.70618 1.03106 1.23983 1.22686 1.77163 0.99683 1.10162 1.32383 1.48397 1.01931 1.06976 1.55452 1.19742 0.96282 0.74686 0.96993 1.21253 1.47755 0.98799 0.91096 0.95992 1.25848 0.93671 0.99213 0.99088 1.70041 1.46912 1.19244 1.21410 0.85661 0.80532 0.77659 0.78884 1.17276 1.20165 1.16981 0.88128 0.91301 0.88587 0.82179 0.74274 0.81354 0.79667 0.77802 0.88829 0.88544 0.88516 0.76625 0.93442 0.91100 0.91678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.93 9.89 71.24 0.70 -2.22 16 2 C 0.09 3.82 6.92 41.38 0.29 4.10 16 3 C -0.29 -13.04 9.52 22.11 0.21 -12.83 16 4 C 0.28 12.46 8.11 133.36 1.08 13.54 16 5 N -0.63 -21.94 5.43 -315.51 -1.71 -23.66 16 6 C 0.54 17.49 7.39 85.10 0.63 18.12 16 7 O -0.52 -19.89 9.75 -4.56 -0.04 -19.93 16 8 C -0.23 -4.86 9.85 22.43 0.22 -4.64 16 9 C 0.05 0.85 10.18 23.80 0.24 1.09 16 10 C -0.02 -0.60 5.00 40.41 0.20 -0.40 16 11 C -0.02 -0.44 11.53 83.69 0.96 0.53 16 12 N -0.46 -7.86 3.14 -550.92 -1.73 -9.59 16 13 C 0.07 0.47 11.16 127.77 1.43 1.89 16 14 C 0.17 3.77 12.55 180.10 2.26 6.03 16 15 N -0.49 -14.42 9.07 -189.04 -1.72 -16.14 16 16 N -0.36 -18.04 12.59 -54.48 -0.69 -18.73 16 17 N -0.35 -17.18 3.59 -338.44 -1.22 -18.40 16 18 C 0.24 12.20 4.88 85.63 0.42 12.61 16 19 C -0.55 -32.81 9.94 25.60 0.25 -32.55 16 20 H 0.02 1.51 8.06 -2.91 -0.02 1.49 16 21 C 0.02 1.24 5.47 84.65 0.46 1.70 16 22 N -0.94 -58.24 13.96 21.45 0.30 -57.94 16 23 Si 0.95 41.96 27.47 68.60 1.88 43.84 16 24 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 25 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 26 H -0.25 -10.14 6.54 99.48 0.65 -9.49 16 27 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 28 H 0.07 2.55 7.71 -2.39 -0.02 2.53 16 29 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 30 H 0.16 7.05 5.90 -2.91 -0.02 7.03 16 31 H 0.42 11.85 8.78 -92.71 -0.81 11.04 16 32 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 33 H 0.19 1.49 8.06 -2.91 -0.02 1.47 16 34 H 0.21 2.08 8.06 -2.91 -0.02 2.06 16 35 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 36 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.10 0.49 8.14 -2.38 -0.02 0.47 16 38 H 0.22 3.63 8.06 -2.91 -0.02 3.61 16 39 H 0.05 2.38 7.20 -2.38 -0.02 2.36 16 40 H 0.07 3.15 7.07 -2.39 -0.02 3.13 16 41 H 0.27 15.62 8.31 -92.70 -0.77 14.85 16 Total: -1.00 -89.76 354.13 4.63 -85.13 By element: Atomic # 1 Polarization: 28.25 SS G_CDS: 0.20 Total: 28.45 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: 9.36 Total: 6.98 kcal Atomic # 7 Polarization: -137.69 SS G_CDS: -6.77 Total: -144.45 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.04 Total: -19.93 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 1.88 Total: 43.84 kcal Total: -89.76 4.63 -85.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935182795.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.327 kcal (2) G-P(sol) polarization free energy of solvation -89.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds