Wall clock time and date at job start Tue Mar 31 2020 10:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30060 * 124.94121 * 2 1 4 4 C 1.35780 * 109.43462 * 179.89489 * 3 2 1 5 5 C 1.39485 * 133.74885 * 180.10852 * 4 3 2 6 6 C 1.39675 * 118.05501 * 180.28115 * 5 4 3 7 7 C 1.47689 * 120.38496 * 179.97438 * 6 5 4 8 8 O 1.21568 * 119.99756 * 215.97346 * 7 6 5 9 9 N 1.34770 * 119.99756 * 35.97029 * 7 6 5 10 10 C 1.46962 * 120.59899 * 5.51270 * 9 7 6 11 11 C 1.53807 * 108.39816 * 124.75511 * 10 9 7 12 12 N 1.46962 * 108.57796 * 49.64482 * 11 10 9 13 13 C 1.36937 * 120.59538 * 124.62688 * 12 11 10 14 14 H 1.08008 * 119.99649 * 205.28096 * 13 12 11 15 15 C 1.38804 * 120.00454 * 25.27415 * 13 12 11 16 16 N 1.31626 * 119.99916 * 16.38690 * 15 13 12 17 17 Si 1.86803 * 120.00328 * 196.38476 * 15 13 12 18 18 H 1.48499 * 109.46956 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46822 * 119.99931 * 17 15 13 20 20 H 1.48500 * 109.47248 * 239.99834 * 17 15 13 21 21 C 1.46963 * 118.81115 * 304.64389 * 12 11 10 22 22 C 1.46968 * 120.59075 * 185.79481 * 9 7 6 23 23 C 1.39987 * 119.23283 * 359.97438 * 6 5 4 24 24 N 1.31391 * 121.15793 * 0.02562 * 23 6 5 25 25 C 1.32541 * 121.79337 * 359.97438 * 24 23 6 26 26 N 1.36166 * 124.94632 * 180.30002 * 2 1 3 27 27 H 0.97000 * 126.23384 * 359.96691 * 26 2 1 28 28 H 1.09003 * 109.47295 * 269.69690 * 1 2 3 29 29 H 1.09001 * 109.47259 * 29.70122 * 1 2 3 30 30 H 1.09002 * 109.46986 * 149.69866 * 1 2 3 31 31 H 1.08002 * 120.97581 * 0.29315 * 5 4 3 32 32 H 1.08998 * 109.61653 * 244.54392 * 10 9 7 33 33 H 1.09000 * 109.60619 * 5.05419 * 10 9 7 34 34 H 1.08996 * 109.74848 * 289.85424 * 11 10 9 35 35 H 1.09001 * 109.53256 * 169.30718 * 11 10 9 36 36 H 0.96995 * 120.00002 * 180.02562 * 16 15 13 37 37 H 1.08998 * 109.61203 * 295.48114 * 21 12 11 38 38 H 1.08997 * 109.61185 * 174.97484 * 21 12 11 39 39 H 1.08992 * 109.60946 * 354.94817 * 22 9 7 40 40 H 1.09009 * 109.60992 * 115.28938 * 22 9 7 41 41 H 1.07998 * 119.41994 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2519 1.0662 0.0000 4 6 3.5602 0.7031 0.0023 5 6 4.7591 1.4162 0.0053 6 6 5.9538 0.6927 0.0011 7 6 7.2527 1.3954 0.0034 8 8 8.1923 0.9381 -0.6179 9 7 7.3964 2.5437 0.6941 10 6 6.3089 3.0454 1.5459 11 6 6.8609 3.2523 2.9665 12 7 8.1056 4.0285 2.8767 13 6 8.2513 5.1957 3.5779 14 1 8.9380 5.9529 3.2293 15 6 7.5163 5.4057 4.7365 16 7 6.9346 4.3908 5.3399 17 14 7.3528 7.1286 5.4395 18 1 8.0942 8.0863 4.5802 19 1 5.9186 7.5113 5.4831 20 1 7.9150 7.1580 6.8137 21 6 9.1910 3.5298 2.0205 22 6 8.6411 3.3199 0.6043 23 6 5.9057 -0.7064 -0.0053 24 7 4.7587 -1.3472 -0.0079 25 6 3.5996 -0.7043 -0.0041 26 7 2.2869 -1.1161 -0.0058 27 1 1.9740 -2.0343 -0.0102 28 1 -0.3634 -0.0054 1.0277 29 1 -0.3634 0.8927 -0.5092 30 1 -0.3633 -0.8873 -0.5185 31 1 4.7634 2.4962 0.0109 32 1 5.9424 3.9930 1.1513 33 1 5.4975 2.3179 1.5695 34 1 7.0651 2.2856 3.4267 35 1 6.1317 3.7983 3.5649 36 1 6.4207 4.5376 6.1493 37 1 9.5612 2.5829 2.4133 38 1 10.0007 4.2591 1.9942 39 1 9.3703 2.7739 0.0059 40 1 8.4375 4.2856 0.1413 41 1 6.8277 -1.2688 -0.0090 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948698628.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:26 Heat of formation + Delta-G solvation = 94.138049 kcal Electronic energy + Delta-G solvation = -26107.823213 eV Core-core repulsion = 22411.049512 eV Total energy + Delta-G solvation = -3696.773702 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.58746 -40.01763 -38.10970 -36.75595 -34.29478 -33.66029 -32.07223 -31.77540 -30.89557 -30.00429 -28.36786 -27.00310 -24.48627 -23.55324 -23.22141 -22.49882 -21.43786 -20.64290 -19.06838 -18.74313 -17.55416 -16.98286 -16.22207 -16.13998 -15.69907 -15.64124 -14.86460 -14.64901 -14.18686 -13.84558 -13.75568 -13.66400 -13.41040 -13.33175 -13.23296 -13.06184 -12.77379 -12.46192 -12.15824 -11.72735 -11.41487 -11.22088 -11.12286 -10.86300 -10.73255 -10.50175 -10.23974 -10.03903 -9.88866 -9.77811 -9.28738 -8.90726 -8.62503 -8.60910 -8.27936 -6.75977 -5.85224 -3.29031 0.58256 0.81254 2.25021 2.49306 2.95361 3.30228 3.33753 3.42011 3.43975 3.65640 3.82148 4.14926 4.43618 4.45101 4.63262 4.75967 4.83280 4.97825 5.04706 5.20026 5.27217 5.33655 5.41671 5.63581 5.75203 5.81369 5.86604 5.91847 5.94272 6.09016 6.15397 6.31654 6.36764 6.41440 6.76280 6.84017 6.90152 7.20371 7.47490 7.51192 7.65209 7.69810 7.83756 8.33779 8.43574 9.11042 9.73952 10.28689 11.21656 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.014506 B = 0.003857 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.818854 B = 7258.167781 C = 8713.417180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.292 3.708 3 N -0.475 5.475 4 C -0.004 4.004 5 C 0.018 3.982 6 C -0.184 4.184 7 C 0.563 3.437 8 O -0.550 6.550 9 N -0.587 5.587 10 C 0.066 3.934 11 C 0.154 3.846 12 N -0.593 5.593 13 C -0.250 4.250 14 H 0.070 0.930 15 C -0.001 4.001 16 N -0.905 5.905 17 Si 0.905 3.095 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.290 1.290 21 C 0.131 3.869 22 C 0.096 3.904 23 C 0.193 3.807 24 N -0.488 5.488 25 C 0.255 3.745 26 N -0.587 5.587 27 H 0.427 0.573 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.082 0.918 31 H 0.156 0.844 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.022 0.978 35 H 0.111 0.889 36 H 0.255 0.745 37 H 0.025 0.975 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.043 -9.916 -10.969 19.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.025 3.975 3 N -0.196 5.196 4 C -0.124 4.124 5 C -0.010 4.010 6 C -0.192 4.192 7 C 0.350 3.650 8 O -0.429 6.429 9 N -0.318 5.318 10 C -0.058 4.058 11 C 0.027 3.973 12 N -0.315 5.315 13 C -0.380 4.380 14 H 0.088 0.912 15 C -0.199 4.199 16 N -0.550 5.550 17 Si 0.735 3.265 18 H -0.202 1.202 19 H -0.215 1.215 20 H -0.217 1.217 21 C 0.004 3.996 22 C -0.028 4.028 23 C 0.025 3.975 24 N -0.201 5.201 25 C 0.018 3.982 26 N -0.202 5.202 27 H 0.267 0.733 28 H 0.111 0.889 29 H 0.119 0.881 30 H 0.101 0.899 31 H 0.173 0.827 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.041 0.959 35 H 0.128 0.872 36 H 0.065 0.935 37 H 0.043 0.957 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.084 0.916 41 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -11.954 -10.104 -11.118 19.199 hybrid contribution -0.059 0.422 0.592 0.730 sum -12.013 -9.682 -10.526 18.677 Atomic orbital electron populations 1.20429 0.83394 1.04993 1.04686 1.23714 0.95813 0.80314 0.97702 1.70468 1.00291 1.27414 1.21378 1.19512 0.92734 0.91616 1.08513 1.21174 0.88000 1.01085 0.90700 1.20719 0.93969 0.95680 1.08861 1.17857 0.86729 0.80778 0.79606 1.90742 1.40645 1.66279 1.45284 1.47990 1.17475 1.22123 1.44220 1.23252 0.89110 0.98514 0.94900 1.21401 0.90263 0.95581 0.90020 1.44054 1.10627 1.25005 1.51847 1.19304 1.23623 0.92399 1.02647 0.91191 1.25014 1.01568 0.97493 0.95790 1.69982 1.37494 1.28570 1.18978 0.86171 0.77592 0.84060 0.78652 1.20222 1.21489 1.21713 1.21296 0.91624 0.97761 0.88902 1.22263 0.85613 0.94733 1.00151 1.22662 0.94247 0.90100 0.90503 1.66480 0.95738 1.40364 1.17492 1.19089 0.86161 0.91270 1.01652 1.42676 1.03666 1.10535 1.63343 0.73320 0.88889 0.88116 0.89928 0.82696 0.91335 0.90275 0.95941 0.87168 0.93524 0.95681 0.91408 0.89717 0.91625 0.80638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.36 10.51 36.00 0.38 0.02 16 2 C 0.29 2.88 8.08 -154.75 -1.25 1.63 16 3 N -0.47 -6.50 11.29 -8.20 -0.09 -6.60 16 4 C 0.00 -0.06 7.23 -84.69 -0.61 -0.68 16 5 C 0.02 0.27 7.51 -38.58 -0.29 -0.02 16 6 C -0.18 -2.88 5.30 -104.85 -0.56 -3.44 16 7 C 0.56 10.03 7.38 -12.40 -0.09 9.94 16 8 O -0.55 -10.89 16.26 5.31 0.09 -10.80 16 9 N -0.59 -10.69 2.94 -173.39 -0.51 -11.20 16 10 C 0.07 1.21 5.04 -3.37 -0.02 1.20 16 11 C 0.15 3.54 5.56 -3.37 -0.02 3.53 16 12 N -0.59 -14.38 2.98 -171.78 -0.51 -14.90 16 13 C -0.25 -6.61 9.62 -15.06 -0.14 -6.76 16 14 H 0.07 1.81 7.87 -52.48 -0.41 1.40 16 15 C 0.00 -0.02 4.97 -17.43 -0.09 -0.11 16 16 N -0.91 -25.44 10.91 55.49 0.61 -24.83 16 17 Si 0.91 21.08 29.58 -169.99 -5.03 16.05 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 21 C 0.13 2.71 6.67 -3.60 -0.02 2.69 16 22 C 0.10 1.74 6.60 -3.60 -0.02 1.72 16 23 C 0.19 2.81 10.76 -17.09 -0.18 2.63 16 24 N -0.49 -7.02 10.36 -11.96 -0.12 -7.15 16 25 C 0.25 3.50 8.45 -155.64 -1.31 2.19 16 26 N -0.59 -5.74 6.20 -9.44 -0.06 -5.80 16 27 H 0.43 2.65 8.96 -40.82 -0.37 2.28 16 28 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.16 2.21 6.19 -52.49 -0.32 1.89 16 32 H 0.07 1.22 8.11 -51.93 -0.42 0.80 16 33 H 0.08 1.34 4.36 -51.93 -0.23 1.11 16 34 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.11 2.82 5.70 -51.93 -0.30 2.52 16 36 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 37 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 1.32 7.92 -51.93 -0.41 0.91 16 39 H 0.08 1.48 6.99 -51.93 -0.36 1.11 16 40 H 0.07 1.14 8.14 -51.92 -0.42 0.72 16 41 H 0.18 2.28 8.01 -52.49 -0.42 1.86 16 LS Contribution 336.79 15.07 5.08 5.08 Total: -1.00 -33.49 336.79 -9.71 -43.19 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -4.91 Total: 2.43 kcal Atomic # 6 Polarization: 18.75 SS G_CDS: -4.23 Total: 14.52 kcal Atomic # 7 Polarization: -69.78 SS G_CDS: -0.69 Total: -70.47 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.80 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.49 -9.71 -43.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948698628.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.332 kcal (2) G-P(sol) polarization free energy of solvation -33.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds