Wall clock time and date at job start Tue Mar 31 2020 10:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30060 * 124.94121 * 2 1 4 4 C 1.35780 * 109.43462 * 179.89489 * 3 2 1 5 5 C 1.39485 * 133.74885 * 180.10852 * 4 3 2 6 6 C 1.39675 * 118.05501 * 180.28115 * 5 4 3 7 7 C 1.47689 * 120.38496 * 179.97438 * 6 5 4 8 8 O 1.21568 * 119.99756 * 215.97346 * 7 6 5 9 9 N 1.34770 * 119.99756 * 35.97029 * 7 6 5 10 10 C 1.46962 * 120.59899 * 5.51270 * 9 7 6 11 11 C 1.53807 * 108.39816 * 124.75511 * 10 9 7 12 12 N 1.46962 * 108.57796 * 49.64482 * 11 10 9 13 13 C 1.36937 * 120.59538 * 124.62688 * 12 11 10 14 14 H 1.08008 * 119.99649 * 205.28096 * 13 12 11 15 15 C 1.38804 * 120.00454 * 25.27415 * 13 12 11 16 16 N 1.31626 * 119.99916 * 16.38690 * 15 13 12 17 17 Si 1.86803 * 120.00328 * 196.38476 * 15 13 12 18 18 H 1.48499 * 109.46956 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46822 * 119.99931 * 17 15 13 20 20 H 1.48500 * 109.47248 * 239.99834 * 17 15 13 21 21 C 1.46963 * 118.81115 * 304.64389 * 12 11 10 22 22 C 1.46968 * 120.59075 * 185.79481 * 9 7 6 23 23 C 1.39987 * 119.23283 * 359.97438 * 6 5 4 24 24 N 1.31391 * 121.15793 * 0.02562 * 23 6 5 25 25 C 1.32541 * 121.79337 * 359.97438 * 24 23 6 26 26 N 1.36166 * 124.94632 * 180.30002 * 2 1 3 27 27 H 0.97000 * 126.23384 * 359.96691 * 26 2 1 28 28 H 1.09003 * 109.47295 * 269.69690 * 1 2 3 29 29 H 1.09001 * 109.47259 * 29.70122 * 1 2 3 30 30 H 1.09002 * 109.46986 * 149.69866 * 1 2 3 31 31 H 1.08002 * 120.97581 * 0.29315 * 5 4 3 32 32 H 1.08998 * 109.61653 * 244.54392 * 10 9 7 33 33 H 1.09000 * 109.60619 * 5.05419 * 10 9 7 34 34 H 1.08996 * 109.74848 * 289.85424 * 11 10 9 35 35 H 1.09001 * 109.53256 * 169.30718 * 11 10 9 36 36 H 0.96995 * 120.00002 * 180.02562 * 16 15 13 37 37 H 1.08998 * 109.61203 * 295.48114 * 21 12 11 38 38 H 1.08997 * 109.61185 * 174.97484 * 21 12 11 39 39 H 1.08992 * 109.60946 * 354.94817 * 22 9 7 40 40 H 1.09009 * 109.60992 * 115.28938 * 22 9 7 41 41 H 1.07998 * 119.41994 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2519 1.0662 0.0000 4 6 3.5602 0.7031 0.0023 5 6 4.7591 1.4162 0.0053 6 6 5.9538 0.6927 0.0011 7 6 7.2527 1.3954 0.0034 8 8 8.1923 0.9381 -0.6179 9 7 7.3964 2.5437 0.6941 10 6 6.3089 3.0454 1.5459 11 6 6.8609 3.2523 2.9665 12 7 8.1056 4.0285 2.8767 13 6 8.2513 5.1957 3.5779 14 1 8.9380 5.9529 3.2293 15 6 7.5163 5.4057 4.7365 16 7 6.9346 4.3908 5.3399 17 14 7.3528 7.1286 5.4395 18 1 8.0942 8.0863 4.5802 19 1 5.9186 7.5113 5.4831 20 1 7.9150 7.1580 6.8137 21 6 9.1910 3.5298 2.0205 22 6 8.6411 3.3199 0.6043 23 6 5.9057 -0.7064 -0.0053 24 7 4.7587 -1.3472 -0.0079 25 6 3.5996 -0.7043 -0.0041 26 7 2.2869 -1.1161 -0.0058 27 1 1.9740 -2.0343 -0.0102 28 1 -0.3634 -0.0054 1.0277 29 1 -0.3634 0.8927 -0.5092 30 1 -0.3633 -0.8873 -0.5185 31 1 4.7634 2.4962 0.0109 32 1 5.9424 3.9930 1.1513 33 1 5.4975 2.3179 1.5695 34 1 7.0651 2.2856 3.4267 35 1 6.1317 3.7983 3.5649 36 1 6.4207 4.5376 6.1493 37 1 9.5612 2.5829 2.4133 38 1 10.0007 4.2591 1.9942 39 1 9.3703 2.7739 0.0059 40 1 8.4375 4.2856 0.1413 41 1 6.8277 -1.2688 -0.0090 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948698628.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:25 Heat of formation + Delta-G solvation = 72.141373 kcal Electronic energy + Delta-G solvation = -26108.777061 eV Core-core repulsion = 22411.049512 eV Total energy + Delta-G solvation = -3697.727549 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.55329 -41.39074 -39.29719 -38.37633 -35.83383 -34.91928 -33.49810 -32.51591 -32.46030 -31.60134 -29.30921 -28.65951 -26.02021 -24.97486 -24.60973 -23.82132 -22.52588 -21.99796 -20.55565 -19.77536 -19.03490 -18.24144 -17.70001 -17.25187 -17.00816 -16.88088 -16.61327 -16.14732 -15.48155 -15.45812 -15.19263 -14.97829 -14.64035 -14.48639 -14.41742 -14.21891 -13.90093 -13.33400 -13.28838 -13.18378 -12.96591 -12.72686 -12.48095 -12.33927 -12.22515 -12.19369 -12.02432 -11.80850 -11.68889 -11.18525 -10.61673 -10.43095 -10.05407 -9.87074 -9.60039 -8.69629 -7.86979 -5.34474 -0.48954 -0.28983 1.38667 1.48648 1.51622 1.54258 1.61533 1.64805 1.92245 2.51462 2.58605 2.82875 3.21838 3.27551 3.43570 3.52438 3.57220 3.65403 3.93739 4.13661 4.18308 4.22879 4.36784 4.44096 4.51871 4.61239 4.71672 4.73835 4.74452 4.79779 4.81476 4.85867 5.06119 5.13105 5.22914 5.31694 5.49095 5.60673 5.65442 6.06854 6.33196 6.35628 6.56555 6.65217 6.99670 7.10344 7.78876 8.30501 9.17749 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.014506 B = 0.003857 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.818854 B = 7258.167781 C = 8713.417180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.314 3.686 3 N -0.516 5.516 4 C -0.019 4.019 5 C 0.012 3.988 6 C -0.195 4.195 7 C 0.568 3.432 8 O -0.570 6.570 9 N -0.592 5.592 10 C 0.087 3.913 11 C 0.161 3.839 12 N -0.609 5.609 13 C -0.259 4.259 14 H 0.075 0.925 15 C -0.051 4.051 16 N -0.937 5.937 17 Si 0.970 3.030 18 H -0.266 1.266 19 H -0.289 1.289 20 H -0.296 1.296 21 C 0.131 3.869 22 C 0.105 3.895 23 C 0.186 3.814 24 N -0.490 5.490 25 C 0.243 3.757 26 N -0.572 5.572 27 H 0.445 0.555 28 H 0.110 0.890 29 H 0.105 0.895 30 H 0.116 0.884 31 H 0.157 0.843 32 H 0.078 0.922 33 H 0.095 0.905 34 H -0.006 1.006 35 H 0.084 0.916 36 H 0.251 0.749 37 H 0.011 0.989 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.942 -10.171 -12.090 21.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.046 3.954 3 N -0.238 5.238 4 C -0.138 4.138 5 C -0.015 4.015 6 C -0.203 4.203 7 C 0.357 3.643 8 O -0.452 6.452 9 N -0.323 5.323 10 C -0.037 4.037 11 C 0.034 3.966 12 N -0.333 5.333 13 C -0.389 4.389 14 H 0.093 0.907 15 C -0.246 4.246 16 N -0.584 5.584 17 Si 0.798 3.202 18 H -0.190 1.190 19 H -0.215 1.215 20 H -0.223 1.223 21 C 0.004 3.996 22 C -0.018 4.018 23 C 0.018 3.982 24 N -0.202 5.202 25 C 0.005 3.995 26 N -0.189 5.189 27 H 0.289 0.711 28 H 0.128 0.872 29 H 0.124 0.876 30 H 0.135 0.865 31 H 0.175 0.825 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.012 0.988 35 H 0.102 0.898 36 H 0.060 0.940 37 H 0.029 0.971 38 H 0.097 0.903 39 H 0.112 0.888 40 H 0.097 0.903 41 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -13.861 -10.391 -12.270 21.228 hybrid contribution 0.426 0.407 0.925 1.097 sum -13.435 -9.985 -11.344 20.221 Atomic orbital electron populations 1.20751 0.79409 1.06916 1.06307 1.24769 0.97554 0.79282 0.93804 1.70505 0.99943 1.29257 1.24082 1.19715 0.93345 0.92246 1.08529 1.21170 0.88148 1.01205 0.90986 1.20523 0.93046 0.96053 1.10691 1.18092 0.87243 0.80181 0.78774 1.90722 1.41683 1.66622 1.46129 1.48009 1.17406 1.22499 1.44369 1.22961 0.89186 0.99583 0.91964 1.21182 0.89602 0.93467 0.92333 1.44310 1.11934 1.24845 1.52164 1.19639 1.23299 0.93230 1.02701 0.90745 1.25746 1.01751 1.00721 0.96349 1.70145 1.38484 1.30395 1.19341 0.85167 0.77295 0.80194 0.77530 1.18988 1.21546 1.22297 1.21392 0.91255 0.97193 0.89711 1.22140 0.85802 0.95568 0.98299 1.22810 0.94897 0.89800 0.90691 1.66533 0.95925 1.40223 1.17548 1.19362 0.87262 0.91296 1.01543 1.42744 1.02095 1.11756 1.62323 0.71138 0.87179 0.87623 0.86526 0.82512 0.90354 0.88706 0.98779 0.89776 0.93990 0.97083 0.90338 0.88780 0.90341 0.79651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.51 71.23 0.75 0.33 16 2 C 0.31 5.34 8.08 137.89 1.11 6.46 16 3 N -0.52 -13.42 11.29 -179.87 -2.03 -15.45 16 4 C -0.02 -0.55 7.23 39.46 0.29 -0.26 16 5 C 0.01 0.36 7.51 22.92 0.17 0.53 16 6 C -0.20 -6.08 5.30 -20.01 -0.11 -6.19 16 7 C 0.57 20.15 7.38 86.74 0.64 20.79 16 8 O -0.57 -22.44 16.26 -3.93 -0.06 -22.51 16 9 N -0.59 -21.42 2.94 -820.76 -2.41 -23.83 16 10 C 0.09 3.20 5.04 86.56 0.44 3.63 16 11 C 0.16 7.61 5.56 86.56 0.48 8.09 16 12 N -0.61 -29.95 2.98 -697.38 -2.08 -32.03 16 13 C -0.26 -13.74 9.62 84.03 0.81 -12.93 16 14 H 0.07 3.81 7.87 -2.91 -0.02 3.79 16 15 C -0.05 -2.75 4.97 84.86 0.42 -2.33 16 16 N -0.94 -53.96 10.91 21.65 0.24 -53.73 16 17 Si 0.97 43.61 29.58 68.60 2.03 45.64 16 18 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 19 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 20 H -0.30 -13.47 7.11 99.48 0.71 -12.77 16 21 C 0.13 5.41 6.67 86.41 0.58 5.99 16 22 C 0.11 3.74 6.60 86.41 0.57 4.31 16 23 C 0.19 5.37 10.76 85.18 0.92 6.29 16 24 N -0.49 -13.67 10.36 -191.75 -1.99 -15.65 16 25 C 0.24 6.38 8.45 133.91 1.13 7.51 16 26 N -0.57 -9.78 6.20 -183.79 -1.14 -10.92 16 27 H 0.45 4.13 8.96 -92.71 -0.83 3.30 16 28 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.12 -0.09 8.14 -2.39 -0.02 -0.11 16 31 H 0.16 4.45 6.19 -2.91 -0.02 4.43 16 32 H 0.08 2.76 8.11 -2.39 -0.02 2.74 16 33 H 0.10 3.22 4.36 -2.39 -0.01 3.21 16 34 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 35 H 0.08 4.45 5.70 -2.39 -0.01 4.44 16 36 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 37 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.08 3.03 7.92 -2.39 -0.02 3.01 16 39 H 0.09 3.19 6.99 -2.39 -0.02 3.17 16 40 H 0.08 2.60 8.14 -2.38 -0.02 2.58 16 41 H 0.19 4.79 8.01 -2.91 -0.02 4.77 16 Total: -1.00 -73.24 336.79 1.01 -72.24 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 0.26 Total: 14.01 kcal Atomic # 6 Polarization: 34.02 SS G_CDS: 8.20 Total: 42.22 kcal Atomic # 7 Polarization: -142.19 SS G_CDS: -9.41 Total: -151.60 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.06 Total: -22.51 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -73.24 1.01 -72.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948698628.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.379 kcal (2) G-P(sol) polarization free energy of solvation -73.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds