Wall clock time and date at job start Tue Mar 31 2020 10:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30285 * 124.96930 * 2 1 4 4 C 1.34655 * 109.66578 * 180.02562 * 3 2 1 5 5 C 1.40837 * 107.26213 * 0.02562 * 4 3 2 6 6 N 1.32113 * 120.45901 * 179.97438 * 5 4 3 7 7 C 1.31726 * 121.95196 * 0.02562 * 6 5 4 8 8 C 1.38340 * 121.54820 * 359.71283 * 7 6 5 9 9 C 1.39639 * 119.37166 * 0.56649 * 8 7 6 10 10 C 1.47763 * 121.07343 * 179.72610 * 9 8 7 11 11 O 1.21562 * 120.00210 * 179.71304 * 10 9 8 12 12 N 1.34773 * 119.99780 * 359.72463 * 10 9 8 13 13 C 1.46501 * 119.99782 * 179.97438 * 12 10 9 14 14 H 1.09002 * 110.78172 * 323.20910 * 13 12 10 15 15 C 1.55405 * 110.69436 * 199.81994 * 13 12 10 16 16 C 1.54914 * 101.66697 * 277.04903 * 15 13 12 17 17 N 1.47426 * 104.82992 * 323.07703 * 16 15 13 18 18 C 1.36936 * 125.64483 * 204.16378 * 17 16 15 19 19 H 1.08004 * 119.99836 * 179.97438 * 18 17 16 20 20 C 1.38815 * 120.00358 * 359.95842 * 18 17 16 21 21 N 1.31619 * 119.99732 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00198 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46977 * 60.00100 * 22 20 18 24 24 H 1.48497 * 109.47073 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.46946 * 300.00062 * 22 20 18 26 26 C 1.47018 * 108.70517 * 24.12623 * 17 16 15 27 27 N 1.35991 * 124.97083 * 180.02562 * 2 1 3 28 28 H 0.96998 * 126.35824 * 0.02562 * 27 2 1 29 29 H 1.09004 * 109.47075 * 269.96985 * 1 2 3 30 30 H 1.09002 * 109.47466 * 29.97496 * 1 2 3 31 31 H 1.09003 * 109.47314 * 149.97481 * 1 2 3 32 32 H 1.08004 * 119.22687 * 180.02562 * 7 6 5 33 33 H 1.07990 * 120.31305 * 180.29434 * 8 7 6 34 34 H 0.97002 * 120.00464 * 359.97438 * 12 10 9 35 35 H 1.09000 * 110.89538 * 158.97708 * 15 13 12 36 36 H 1.09001 * 111.03900 * 35.18193 * 15 13 12 37 37 H 1.08999 * 110.37121 * 204.23438 * 16 15 13 38 38 H 1.09003 * 110.36718 * 81.91343 * 16 15 13 39 39 H 0.96996 * 119.99954 * 180.02562 * 21 20 18 40 40 H 1.09002 * 109.88241 * 118.36067 * 26 17 16 41 41 H 1.09000 * 109.88049 * 239.37196 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2537 1.0676 0.0000 4 6 3.5525 0.7122 -0.0006 5 6 3.6006 -0.6953 -0.0015 6 7 4.7616 -1.3257 -0.0028 7 6 5.9076 -0.6761 -0.0026 8 6 5.9559 0.7064 -0.0071 9 6 4.7637 1.4334 0.0002 10 6 4.7714 2.9110 0.0018 11 8 3.7219 3.5244 0.0029 12 7 5.9421 3.5787 0.0018 13 6 5.9498 5.0437 0.0029 14 1 5.1355 5.4352 -0.6069 15 6 7.3202 5.5861 -0.4902 16 6 8.1684 5.5172 0.8043 17 7 7.2354 5.8800 1.8866 18 6 7.5879 6.4021 3.1024 19 1 6.8258 6.6359 3.8311 20 6 8.9247 6.6307 3.3985 21 7 9.8534 6.3460 2.5104 22 14 9.4054 7.3437 5.0569 23 1 8.9490 6.4336 6.1380 24 1 10.8816 7.4897 5.1237 25 1 8.7676 8.6738 5.2274 26 6 5.8639 5.5892 1.4440 27 7 2.2864 -1.1144 -0.0005 28 1 1.9759 -2.0333 -0.0013 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3634 -0.8898 -0.5142 32 1 6.8312 -1.2360 -0.0041 33 1 6.9066 1.2186 -0.0117 34 1 6.7797 3.0893 0.0012 35 1 7.2277 6.6134 -0.8425 36 1 7.7386 4.9448 -1.2660 37 1 8.9909 6.2309 0.7573 38 1 8.5497 4.5072 0.9547 39 1 10.7875 6.5054 2.7174 40 1 5.4143 4.8413 2.0972 41 1 5.2679 6.5016 1.4600 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015364262.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:56 Heat of formation + Delta-G solvation = 86.163371 kcal Electronic energy + Delta-G solvation = -25666.411548 eV Core-core repulsion = 21969.292038 eV Total energy + Delta-G solvation = -3697.119510 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.63415 -39.69338 -38.40476 -37.09754 -33.91863 -33.76316 -32.13135 -31.75493 -31.11661 -29.11008 -28.34155 -27.21602 -24.74623 -24.02585 -23.16972 -21.43422 -20.97010 -20.18292 -19.78540 -18.58855 -17.69826 -17.27081 -16.81416 -16.14934 -15.80781 -15.22635 -14.80156 -14.64612 -14.57501 -13.97490 -13.82553 -13.73393 -13.67335 -13.16584 -13.01031 -12.57069 -12.49747 -12.32388 -11.98293 -11.58841 -11.26429 -11.05642 -11.03178 -10.85038 -10.72133 -10.38902 -10.13675 -9.92068 -9.86761 -9.57069 -9.24121 -9.11396 -8.71540 -8.62403 -8.53085 -6.81871 -5.64663 -3.05194 0.24565 0.95365 2.22514 2.51729 3.03435 3.30235 3.42433 3.46291 3.47780 3.73523 3.82556 4.17712 4.42267 4.50988 4.59568 4.67416 4.85454 4.95263 5.08441 5.31004 5.35772 5.45128 5.47095 5.52731 5.57481 5.70023 5.77998 5.84795 5.89304 6.28428 6.33232 6.38988 6.50786 6.57779 6.78081 6.83409 7.08590 7.43781 7.57101 7.60715 7.63856 7.79461 7.85704 8.36078 8.49514 9.23835 9.84321 10.48975 11.39654 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.019927 B = 0.003017 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.808876 B = 9279.391182 C = 9484.097253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.292 3.708 3 N -0.456 5.456 4 C 0.057 3.943 5 C 0.232 3.768 6 N -0.471 5.471 7 C 0.132 3.868 8 C -0.147 4.147 9 C -0.030 4.030 10 C 0.551 3.449 11 O -0.508 6.508 12 N -0.704 5.704 13 C 0.133 3.867 14 H 0.090 0.910 15 C -0.153 4.153 16 C 0.151 3.849 17 N -0.603 5.603 18 C -0.219 4.219 19 H 0.076 0.924 20 C -0.012 4.012 21 N -0.925 5.925 22 Si 0.915 3.085 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.127 3.873 27 N -0.587 5.587 28 H 0.427 0.573 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.082 0.918 32 H 0.174 0.826 33 H 0.151 0.849 34 H 0.398 0.602 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.109 0.891 38 H 0.010 0.990 39 H 0.252 0.748 40 H 0.026 0.974 41 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.367 -16.834 -9.120 22.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.026 3.974 3 N -0.176 5.176 4 C -0.067 4.067 5 C -0.005 4.005 6 N -0.184 5.184 7 C -0.034 4.034 8 C -0.170 4.170 9 C -0.043 4.043 10 C 0.336 3.664 11 O -0.383 6.383 12 N -0.356 5.356 13 C 0.028 3.972 14 H 0.108 0.892 15 C -0.192 4.192 16 C 0.027 3.973 17 N -0.330 5.330 18 C -0.348 4.348 19 H 0.094 0.906 20 C -0.207 4.207 21 N -0.574 5.574 22 Si 0.745 3.255 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.212 1.212 26 C 0.000 4.000 27 N -0.202 5.202 28 H 0.267 0.733 29 H 0.111 0.889 30 H 0.120 0.880 31 H 0.101 0.899 32 H 0.191 0.809 33 H 0.169 0.831 34 H 0.234 0.766 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.126 0.874 38 H 0.028 0.972 39 H 0.063 0.937 40 H 0.044 0.956 41 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -13.274 -16.295 -8.996 22.861 hybrid contribution 0.934 -0.478 1.002 1.451 sum -12.340 -16.772 -7.993 22.304 Atomic orbital electron populations 1.20433 0.83355 1.05035 1.04667 1.23974 0.96088 0.80216 0.97152 1.70354 1.00462 1.26634 1.20122 1.19230 0.92315 0.90886 1.04263 1.18894 0.86202 0.90898 1.04551 1.66190 0.96065 1.41531 1.14625 1.22508 0.94196 0.91325 0.95331 1.22267 0.98118 0.95613 1.01023 1.19775 0.90732 0.94136 0.99649 1.17892 0.84482 0.86051 0.77979 1.90831 1.31080 1.68602 1.47743 1.45895 1.07797 1.07742 1.74184 1.22060 0.99220 0.78052 0.97850 0.89245 1.23394 0.94951 1.00639 1.00193 1.21956 0.93380 0.99491 0.82517 1.44504 0.99810 1.74242 1.14402 1.19056 0.91827 1.33533 0.90344 0.90588 1.24757 0.95544 1.01900 0.98512 1.69762 0.99795 1.54346 1.33482 0.86143 0.77183 0.78965 0.83172 1.21293 1.21592 1.21164 1.21684 0.88886 0.97115 0.92285 1.42738 1.03578 1.10480 1.63449 0.73327 0.88909 0.87954 0.89943 0.80910 0.83093 0.76618 0.90503 0.91671 0.87355 0.97178 0.93737 0.95612 0.95016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.43 10.51 36.00 0.38 -0.05 16 2 C 0.29 3.14 8.08 -154.72 -1.25 1.89 16 3 N -0.46 -7.18 10.63 -8.07 -0.09 -7.27 16 4 C 0.06 0.90 6.85 -84.61 -0.58 0.32 16 5 C 0.23 3.07 8.46 -155.64 -1.32 1.75 16 6 N -0.47 -5.84 10.35 -12.30 -0.13 -5.96 16 7 C 0.13 1.38 11.14 -17.56 -0.20 1.18 16 8 C -0.15 -1.71 9.60 -39.02 -0.37 -2.08 16 9 C -0.03 -0.46 5.93 -104.45 -0.62 -1.08 16 10 C 0.55 9.84 7.78 -12.37 -0.10 9.74 16 11 O -0.51 -10.82 15.92 5.31 0.08 -10.73 16 12 N -0.70 -11.67 5.08 -52.87 -0.27 -11.94 16 13 C 0.13 2.45 3.26 -65.96 -0.22 2.24 16 14 H 0.09 1.63 7.70 -51.93 -0.40 1.23 16 15 C -0.15 -2.75 6.65 -24.44 -0.16 -2.91 16 16 C 0.15 3.52 5.87 -2.53 -0.01 3.50 16 17 N -0.60 -15.50 3.39 -170.07 -0.58 -16.08 16 18 C -0.22 -6.18 10.27 -15.06 -0.15 -6.34 16 19 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 20 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 21 N -0.92 -26.53 10.09 55.49 0.56 -25.97 16 22 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 C 0.13 2.85 6.97 -3.07 -0.02 2.82 16 27 N -0.59 -5.72 6.23 -9.43 -0.06 -5.78 16 28 H 0.43 2.51 8.96 -40.82 -0.37 2.14 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.17 1.13 8.06 -52.48 -0.42 0.71 16 33 H 0.15 1.37 6.53 -52.49 -0.34 1.03 16 34 H 0.40 5.72 6.76 -40.82 -0.28 5.44 16 35 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.11 2.85 5.87 -51.93 -0.30 2.55 16 38 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 40 H 0.03 0.62 8.04 -51.93 -0.42 0.20 16 41 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 344.50 15.07 5.19 5.19 Total: -1.00 -37.06 344.50 -10.06 -47.12 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -5.03 Total: 3.68 kcal Atomic # 6 Polarization: 15.27 SS G_CDS: -4.72 Total: 10.56 kcal Atomic # 7 Polarization: -72.44 SS G_CDS: -0.56 Total: -73.00 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.08 Total: -10.73 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -37.06 -10.06 -47.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015364262.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.281 kcal (2) G-P(sol) polarization free energy of solvation -37.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds