Wall clock time and date at job start Tue Mar 31 2020 10:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39972 * 120.32292 * 2 1 4 4 N 1.31505 * 120.10349 * 180.02562 * 3 2 1 5 5 C 1.33385 * 120.85627 * 359.64822 * 4 3 2 6 6 C 1.40798 * 132.47898 * 179.62094 * 5 4 3 7 7 C 1.46591 * 126.53972 * 0.76624 * 6 5 4 8 8 O 1.21719 * 119.99546 * 359.71582 * 7 6 5 9 9 N 1.34774 * 120.00214 * 179.71508 * 7 6 5 10 10 C 1.46498 * 119.99837 * 179.97438 * 9 7 6 11 11 H 1.08993 * 110.78022 * 36.79262 * 10 9 7 12 12 C 1.55161 * 110.71724 * 160.02312 * 10 9 7 13 13 C 1.55129 * 101.48184 * 82.70073 * 12 10 9 14 14 N 1.47425 * 104.72388 * 37.29428 * 13 12 10 15 15 C 1.36936 * 125.64754 * 155.82069 * 14 13 12 16 16 H 1.07996 * 119.99955 * 199.18837 * 15 14 13 17 17 C 1.38811 * 120.00309 * 19.18399 * 15 14 13 18 18 N 1.31622 * 120.00115 * 28.44809 * 17 15 14 19 19 Si 1.86799 * 120.00173 * 208.72953 * 17 15 14 20 20 H 1.48493 * 109.47418 * 179.72460 * 19 17 15 21 21 H 1.48505 * 109.46957 * 299.72340 * 19 17 15 22 22 H 1.48496 * 109.47590 * 59.71887 * 19 17 15 23 23 C 1.47015 * 108.70145 * 335.55282 * 14 13 12 24 24 C 1.40639 * 106.92235 * 180.50834 * 6 5 4 25 25 N 1.30698 * 108.72766 * 0.25929 * 24 6 5 26 26 N 1.36600 * 120.79305 * 0.65306 * 5 4 3 27 27 C 1.35753 * 120.32454 * 180.02562 * 2 1 3 28 28 H 1.08994 * 109.47425 * 269.98604 * 1 2 3 29 29 H 1.09003 * 109.46623 * 29.98366 * 1 2 3 30 30 H 1.08994 * 109.47198 * 149.97793 * 1 2 3 31 31 H 1.07994 * 119.94796 * 0.02562 * 3 2 1 32 32 H 0.96995 * 119.99726 * 0.02562 * 9 7 6 33 33 H 1.09002 * 111.00695 * 200.93354 * 12 10 9 34 34 H 1.09002 * 111.00621 * 324.75956 * 12 10 9 35 35 H 1.09007 * 110.49696 * 278.45294 * 13 12 10 36 36 H 1.09002 * 110.34671 * 156.06236 * 13 12 10 37 37 H 0.97002 * 119.99472 * 5.94122 * 18 17 15 38 38 H 1.09005 * 109.88112 * 120.70617 * 23 14 13 39 39 H 1.09002 * 109.88578 * 241.86686 * 23 14 13 40 40 H 1.08002 * 125.63500 * 180.28380 * 24 6 5 41 41 H 1.08007 * 120.41948 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2136 1.2082 0.0000 4 7 3.5287 1.2032 -0.0005 5 6 4.2084 0.0555 0.0060 6 6 5.5864 -0.2334 0.0003 7 6 6.6823 0.7401 0.0003 8 8 6.4372 1.9324 0.0004 9 7 7.9613 0.3151 0.0002 10 6 9.0565 1.2881 -0.0004 11 1 8.8037 2.1552 0.6097 12 6 10.3728 0.6332 0.4954 13 6 10.8843 -0.0508 -0.7996 14 7 10.5367 0.8883 -1.8817 15 6 11.1605 0.9707 -3.0979 16 1 11.0589 1.8632 -3.6975 17 6 11.9236 -0.0927 -3.5600 18 7 11.6372 -1.3210 -3.1836 19 14 13.3620 0.2201 -4.7101 20 1 14.0136 -1.0702 -5.0501 21 1 12.8707 0.8690 -5.9522 22 1 14.3453 1.1103 -4.0423 23 6 9.4051 1.7171 -1.4411 24 6 5.7109 -1.6343 0.0006 25 7 4.5151 -2.1619 0.0004 26 7 3.5552 -1.1441 0.0000 27 6 2.1924 -1.1718 -0.0005 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3633 0.8902 -0.5136 30 1 -0.3633 -0.8897 -0.5141 31 1 1.6781 2.1460 0.0004 32 1 8.1566 -0.6350 -0.0003 33 1 11.0766 1.3878 0.8467 34 1 10.1736 -0.1044 1.2728 35 1 10.3819 -1.0063 -0.9506 36 1 11.9641 -0.1923 -0.7524 37 1 10.8430 -1.4930 -2.6539 38 1 9.6885 2.7695 -1.4563 39 1 8.5484 1.5524 -2.0945 40 1 6.6409 -2.1834 0.0013 41 1 1.6645 -2.1141 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015777004.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:02 Heat of formation + Delta-G solvation = 109.600417 kcal Electronic energy + Delta-G solvation = -25582.743401 eV Core-core repulsion = 21886.640198 eV Total energy + Delta-G solvation = -3696.103203 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.71592 -39.44857 -38.49091 -37.15075 -34.64673 -33.85528 -32.99600 -31.77512 -29.97300 -29.02144 -27.74279 -26.89649 -25.18198 -24.30393 -23.45944 -22.30540 -20.67139 -20.22282 -19.73135 -18.82414 -17.54694 -17.40394 -16.98228 -16.49968 -15.72017 -15.69248 -14.58588 -14.42606 -14.29490 -13.98085 -13.93393 -13.80234 -13.62248 -13.29381 -13.21829 -12.95078 -12.87918 -12.67436 -12.04759 -11.82085 -11.73478 -11.31885 -10.85642 -10.69881 -10.61154 -10.43380 -10.25306 -10.08423 -9.97278 -9.76008 -9.54064 -9.47588 -8.63562 -8.33167 -8.14965 -6.85559 -6.05128 -3.09362 0.09261 0.44195 1.63344 1.98620 2.89885 3.41998 3.52208 3.54243 3.57882 3.73102 3.75637 3.86153 3.94161 4.23053 4.41766 4.64563 4.81743 4.84047 4.94902 4.99248 5.16852 5.22957 5.30706 5.37617 5.43597 5.50174 5.62398 5.69806 5.79016 5.91292 6.10170 6.12824 6.25109 6.36185 6.54276 6.78733 6.95452 7.02344 7.03010 7.13374 7.32507 7.87517 7.94820 8.55473 8.66960 9.08638 9.87373 10.44325 11.27193 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.023430 B = 0.002856 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.738567 B = 9801.797559 C =10027.225388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.190 4.190 3 C 0.185 3.815 4 N -0.434 5.434 5 C 0.311 3.689 6 C -0.278 4.278 7 C 0.595 3.405 8 O -0.534 6.534 9 N -0.711 5.711 10 C 0.137 3.863 11 H 0.091 0.909 12 C -0.144 4.144 13 C 0.144 3.856 14 N -0.601 5.601 15 C -0.333 4.333 16 H 0.063 0.937 17 C -0.027 4.027 18 N -0.916 5.916 19 Si 1.064 2.936 20 H -0.286 1.286 21 H -0.294 1.294 22 H -0.294 1.294 23 C 0.125 3.875 24 C 0.130 3.870 25 N -0.310 5.310 26 N -0.305 5.305 27 C 0.159 3.841 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.183 0.817 32 H 0.396 0.604 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.024 0.976 36 H 0.051 0.949 37 H 0.267 0.733 38 H 0.033 0.967 39 H 0.028 0.972 40 H 0.207 0.793 41 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.471 -0.990 10.775 24.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.196 4.196 3 C 0.001 3.999 4 N -0.144 5.144 5 C 0.080 3.920 6 C -0.295 4.295 7 C 0.382 3.618 8 O -0.411 6.411 9 N -0.362 5.362 10 C 0.032 3.968 11 H 0.109 0.891 12 C -0.183 4.183 13 C 0.018 3.982 14 N -0.329 5.329 15 C -0.461 4.461 16 H 0.080 0.920 17 C -0.228 4.228 18 N -0.557 5.557 19 Si 0.894 3.106 20 H -0.212 1.212 21 H -0.221 1.221 22 H -0.221 1.221 23 C -0.001 4.001 24 C -0.051 4.051 25 N -0.132 5.132 26 N -0.073 5.073 27 C 0.023 3.977 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.200 0.800 32 H 0.230 0.770 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.042 0.958 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.051 0.949 39 H 0.046 0.954 40 H 0.223 0.777 41 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -21.183 -1.300 9.864 23.403 hybrid contribution -1.276 0.149 0.615 1.425 sum -22.459 -1.151 10.479 24.810 Atomic orbital electron populations 1.20614 0.87415 1.04104 1.03344 1.20609 0.99173 0.92349 1.07504 1.23618 0.89006 0.98572 0.88679 1.68353 1.08406 1.23979 1.13627 1.20379 0.93159 0.81158 0.97327 1.19537 0.90319 0.93650 1.25973 1.16706 0.81525 0.87217 0.76388 1.90821 1.83968 1.16132 1.50157 1.45691 1.04868 1.10101 1.75555 1.21902 0.85501 0.91607 0.97754 0.89136 1.23172 0.95902 1.00498 0.98710 1.21571 0.98773 0.92410 0.85459 1.44569 1.34160 1.41125 1.13010 1.19731 1.29365 1.01230 0.95738 0.91962 1.25742 1.03623 0.91844 1.01612 1.70795 1.28547 1.19212 1.37179 0.83536 0.76470 0.75265 0.75365 1.21161 1.22085 1.22125 1.21744 0.91026 0.95037 0.92308 1.24216 0.96648 0.92452 0.91810 1.77608 0.96339 1.08117 1.31165 1.47026 1.06100 1.07980 1.46181 1.21947 0.79373 1.01259 0.95113 0.90258 0.90075 0.90730 0.79991 0.77037 0.90161 0.91260 0.95787 0.93084 0.92209 0.94927 0.95375 0.77701 0.80132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.22 10.03 36.00 0.36 0.14 16 2 C -0.19 -1.22 5.86 -104.86 -0.61 -1.83 16 3 C 0.18 1.62 10.97 -17.04 -0.19 1.43 16 4 N -0.43 -6.24 10.26 -12.00 -0.12 -6.36 16 5 C 0.31 4.76 7.74 -155.83 -1.21 3.56 16 6 C -0.28 -4.49 6.17 -104.66 -0.65 -5.13 16 7 C 0.59 10.99 7.78 -12.89 -0.10 10.88 16 8 O -0.53 -11.64 16.47 5.17 0.09 -11.56 16 9 N -0.71 -12.13 5.10 -53.36 -0.27 -12.40 16 10 C 0.14 2.56 3.24 -66.10 -0.21 2.34 16 11 H 0.09 1.66 7.70 -51.93 -0.40 1.26 16 12 C -0.14 -2.52 6.65 -24.46 -0.16 -2.68 16 13 C 0.14 3.26 5.36 -2.41 -0.01 3.25 16 14 N -0.60 -15.66 3.26 -169.94 -0.55 -16.22 16 15 C -0.33 -9.71 10.00 -15.06 -0.15 -9.86 16 16 H 0.06 1.84 7.97 -52.49 -0.42 1.42 16 17 C -0.03 -0.78 5.09 -17.43 -0.09 -0.86 16 18 N -0.92 -27.79 13.00 55.49 0.72 -27.07 16 19 Si 1.06 25.90 30.00 -169.99 -5.10 20.80 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 C 0.13 2.88 6.98 -3.07 -0.02 2.86 16 24 C 0.13 1.72 11.44 -17.13 -0.20 1.52 16 25 N -0.31 -4.16 12.58 30.76 0.39 -3.78 16 26 N -0.30 -3.86 3.86 -11.97 -0.05 -3.90 16 27 C 0.16 1.29 10.94 -16.45 -0.18 1.11 16 28 H 0.08 0.12 8.14 -51.93 -0.42 -0.31 16 29 H 0.08 0.11 8.10 -51.93 -0.42 -0.31 16 30 H 0.07 0.10 8.08 -51.93 -0.42 -0.32 16 31 H 0.18 0.89 8.06 -52.49 -0.42 0.47 16 32 H 0.40 5.88 7.54 -40.82 -0.31 5.57 16 33 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.02 0.57 6.81 -51.93 -0.35 0.21 16 36 H 0.05 1.27 8.07 -51.93 -0.42 0.85 16 37 H 0.27 8.05 6.19 -40.82 -0.25 7.80 16 38 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.03 0.71 8.04 -51.93 -0.42 0.29 16 40 H 0.21 2.01 7.46 -52.49 -0.39 1.62 16 41 H 0.18 0.83 8.06 -52.48 -0.42 0.40 16 LS Contribution 348.77 15.07 5.26 5.26 Total: -1.00 -39.11 348.77 -8.20 -47.31 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -5.13 Total: 1.20 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: -3.42 Total: 6.73 kcal Atomic # 7 Polarization: -69.85 SS G_CDS: 0.11 Total: -69.74 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.09 Total: -11.56 kcal Atomic # 14 Polarization: 25.90 SS G_CDS: -5.10 Total: 20.80 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -39.11 -8.20 -47.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015777004.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.913 kcal (2) G-P(sol) polarization free energy of solvation -39.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds