Wall clock time and date at job start Tue Mar 31 2020 10:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39972 * 120.32292 * 2 1 4 4 N 1.31505 * 120.10349 * 180.02562 * 3 2 1 5 5 C 1.33385 * 120.85627 * 359.64822 * 4 3 2 6 6 C 1.40798 * 132.47898 * 179.62094 * 5 4 3 7 7 C 1.46591 * 126.53972 * 0.76624 * 6 5 4 8 8 O 1.21719 * 119.99546 * 359.71582 * 7 6 5 9 9 N 1.34774 * 120.00214 * 179.71508 * 7 6 5 10 10 C 1.46498 * 119.99837 * 179.97438 * 9 7 6 11 11 H 1.08993 * 110.78022 * 36.79262 * 10 9 7 12 12 C 1.55161 * 110.71724 * 160.02312 * 10 9 7 13 13 C 1.55129 * 101.48184 * 82.70073 * 12 10 9 14 14 N 1.47425 * 104.72388 * 37.29428 * 13 12 10 15 15 C 1.36936 * 125.64754 * 155.82069 * 14 13 12 16 16 H 1.07996 * 119.99955 * 199.18837 * 15 14 13 17 17 C 1.38811 * 120.00309 * 19.18399 * 15 14 13 18 18 N 1.31622 * 120.00115 * 28.44809 * 17 15 14 19 19 Si 1.86799 * 120.00173 * 208.72953 * 17 15 14 20 20 H 1.48493 * 109.47418 * 179.72460 * 19 17 15 21 21 H 1.48505 * 109.46957 * 299.72340 * 19 17 15 22 22 H 1.48496 * 109.47590 * 59.71887 * 19 17 15 23 23 C 1.47015 * 108.70145 * 335.55282 * 14 13 12 24 24 C 1.40639 * 106.92235 * 180.50834 * 6 5 4 25 25 N 1.30698 * 108.72766 * 0.25929 * 24 6 5 26 26 N 1.36600 * 120.79305 * 0.65306 * 5 4 3 27 27 C 1.35753 * 120.32454 * 180.02562 * 2 1 3 28 28 H 1.08994 * 109.47425 * 269.98604 * 1 2 3 29 29 H 1.09003 * 109.46623 * 29.98366 * 1 2 3 30 30 H 1.08994 * 109.47198 * 149.97793 * 1 2 3 31 31 H 1.07994 * 119.94796 * 0.02562 * 3 2 1 32 32 H 0.96995 * 119.99726 * 0.02562 * 9 7 6 33 33 H 1.09002 * 111.00695 * 200.93354 * 12 10 9 34 34 H 1.09002 * 111.00621 * 324.75956 * 12 10 9 35 35 H 1.09007 * 110.49696 * 278.45294 * 13 12 10 36 36 H 1.09002 * 110.34671 * 156.06236 * 13 12 10 37 37 H 0.97002 * 119.99472 * 5.94122 * 18 17 15 38 38 H 1.09005 * 109.88112 * 120.70617 * 23 14 13 39 39 H 1.09002 * 109.88578 * 241.86686 * 23 14 13 40 40 H 1.08002 * 125.63500 * 180.28380 * 24 6 5 41 41 H 1.08007 * 120.41948 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2136 1.2082 0.0000 4 7 3.5287 1.2032 -0.0005 5 6 4.2084 0.0555 0.0060 6 6 5.5864 -0.2334 0.0003 7 6 6.6823 0.7401 0.0003 8 8 6.4372 1.9324 0.0004 9 7 7.9613 0.3151 0.0002 10 6 9.0565 1.2881 -0.0004 11 1 8.8037 2.1552 0.6097 12 6 10.3728 0.6332 0.4954 13 6 10.8843 -0.0508 -0.7996 14 7 10.5367 0.8883 -1.8817 15 6 11.1605 0.9707 -3.0979 16 1 11.0589 1.8632 -3.6975 17 6 11.9236 -0.0927 -3.5600 18 7 11.6372 -1.3210 -3.1836 19 14 13.3620 0.2201 -4.7101 20 1 14.0136 -1.0702 -5.0501 21 1 12.8707 0.8690 -5.9522 22 1 14.3453 1.1103 -4.0423 23 6 9.4051 1.7171 -1.4411 24 6 5.7109 -1.6343 0.0006 25 7 4.5151 -2.1619 0.0004 26 7 3.5552 -1.1441 0.0000 27 6 2.1924 -1.1718 -0.0005 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3633 0.8902 -0.5136 30 1 -0.3633 -0.8897 -0.5141 31 1 1.6781 2.1460 0.0004 32 1 8.1566 -0.6350 -0.0003 33 1 11.0766 1.3878 0.8467 34 1 10.1736 -0.1044 1.2728 35 1 10.3819 -1.0063 -0.9506 36 1 11.9641 -0.1923 -0.7524 37 1 10.8430 -1.4930 -2.6539 38 1 9.6885 2.7695 -1.4563 39 1 8.5484 1.5524 -2.0945 40 1 6.6409 -2.1834 0.0013 41 1 1.6645 -2.1141 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015777004.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:01 Heat of formation + Delta-G solvation = 81.136691 kcal Electronic energy + Delta-G solvation = -25583.977680 eV Core-core repulsion = 21886.640198 eV Total energy + Delta-G solvation = -3697.337483 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.61299 -40.85510 -39.45563 -38.79633 -35.64183 -35.42302 -34.00068 -33.38143 -31.20332 -30.67665 -29.14600 -27.82583 -26.33487 -25.93355 -24.56653 -23.17693 -22.18653 -21.90754 -21.23871 -19.80680 -19.52013 -18.36287 -18.13208 -17.42875 -17.17891 -16.58014 -16.35490 -15.90904 -15.53404 -15.44743 -15.09403 -15.04180 -14.73565 -14.57605 -14.40310 -13.91396 -13.81437 -13.57485 -13.43969 -13.09551 -12.75514 -12.62752 -12.60118 -12.43390 -12.24400 -12.15378 -11.95156 -11.87655 -11.58669 -10.97444 -10.89033 -10.53999 -10.51542 -10.12794 -9.14298 -9.00736 -8.33693 -5.35827 -0.69881 -0.34512 0.80607 0.92977 1.57280 1.64965 1.84751 2.00097 2.18608 2.50426 2.63479 2.73339 2.89023 3.17287 3.36256 3.51111 3.65553 3.68589 3.80814 3.84635 3.94946 4.10140 4.19924 4.33004 4.37210 4.48343 4.55660 4.81992 4.83318 4.90291 4.94338 4.94806 4.97392 5.02585 5.06660 5.21852 5.27802 5.38411 5.57219 5.67316 6.08927 6.32617 6.48531 6.60840 6.90907 7.30133 7.69155 8.28058 8.97492 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.023430 B = 0.002856 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.738567 B = 9801.797559 C =10027.225388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.166 4.166 3 C 0.192 3.808 4 N -0.493 5.493 5 C 0.301 3.699 6 C -0.327 4.327 7 C 0.595 3.405 8 O -0.578 6.578 9 N -0.704 5.704 10 C 0.150 3.850 11 H 0.099 0.901 12 C -0.120 4.120 13 C 0.145 3.855 14 N -0.620 5.620 15 C -0.353 4.353 16 H 0.049 0.951 17 C -0.073 4.073 18 N -0.936 5.936 19 Si 1.116 2.884 20 H -0.287 1.287 21 H -0.280 1.280 22 H -0.279 1.279 23 C 0.125 3.875 24 C 0.139 3.861 25 N -0.324 5.324 26 N -0.306 5.306 27 C 0.143 3.857 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.220 0.780 32 H 0.407 0.593 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.016 0.984 36 H 0.026 0.974 37 H 0.257 0.743 38 H 0.028 0.972 39 H -0.003 1.003 40 H 0.230 0.770 41 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.684 -1.558 11.716 27.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.172 4.172 3 C 0.012 3.988 4 N -0.204 5.204 5 C 0.067 3.933 6 C -0.344 4.344 7 C 0.384 3.616 8 O -0.459 6.459 9 N -0.355 5.355 10 C 0.045 3.955 11 H 0.117 0.883 12 C -0.158 4.158 13 C 0.020 3.980 14 N -0.347 5.347 15 C -0.481 4.481 16 H 0.066 0.934 17 C -0.269 4.269 18 N -0.578 5.578 19 Si 0.940 3.060 20 H -0.213 1.213 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.001 4.001 24 C -0.042 4.042 25 N -0.146 5.146 26 N -0.073 5.073 27 C 0.009 3.991 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.110 0.890 31 H 0.236 0.764 32 H 0.243 0.757 33 H 0.112 0.888 34 H 0.127 0.873 35 H 0.034 0.966 36 H 0.045 0.955 37 H 0.067 0.933 38 H 0.046 0.954 39 H 0.016 0.984 40 H 0.246 0.754 41 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -23.459 -1.891 10.830 25.907 hybrid contribution -0.921 0.383 0.304 1.043 sum -24.380 -1.508 11.133 26.844 Atomic orbital electron populations 1.20794 0.83656 1.05812 1.04892 1.21128 1.01278 0.90733 1.04073 1.24469 0.87690 1.01259 0.85368 1.68384 1.10983 1.24194 1.16883 1.20491 0.93441 0.82354 0.97023 1.19397 0.90330 0.94327 1.30362 1.17072 0.82170 0.87138 0.75173 1.90769 1.84618 1.18006 1.52512 1.45568 1.04305 1.10400 1.75244 1.21690 0.86588 0.92551 0.94700 0.88299 1.23081 0.94755 1.01123 0.96876 1.21575 0.97287 0.92066 0.87082 1.44811 1.35006 1.41874 1.13037 1.19951 1.30171 1.00830 0.97193 0.93359 1.27155 1.05555 0.91282 1.02930 1.70901 1.28581 1.19961 1.38389 0.82845 0.73606 0.75321 0.74204 1.21252 1.20563 1.20557 1.21796 0.89110 0.94547 0.94674 1.24523 0.97614 0.91446 0.90655 1.77516 0.96497 1.08580 1.32023 1.47230 1.07416 1.06947 1.45739 1.22895 0.77823 1.03711 0.94660 0.88512 0.88451 0.89012 0.76383 0.75737 0.88766 0.87285 0.96590 0.95513 0.93320 0.95432 0.98445 0.75378 0.76468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.01 10.03 71.23 0.71 0.73 16 2 C -0.17 -1.60 5.86 -20.02 -0.12 -1.72 16 3 C 0.19 3.00 10.97 85.16 0.93 3.93 16 4 N -0.49 -14.26 10.26 -191.87 -1.97 -16.23 16 5 C 0.30 9.38 7.74 133.98 1.04 10.42 16 6 C -0.33 -10.94 6.17 -19.89 -0.12 -11.06 16 7 C 0.60 22.91 7.78 86.42 0.67 23.58 16 8 O -0.58 -26.49 16.47 -4.41 -0.07 -26.57 16 9 N -0.70 -24.45 5.10 -440.95 -2.25 -26.70 16 10 C 0.15 5.63 3.24 46.18 0.15 5.78 16 11 H 0.10 3.61 7.70 -2.39 -0.02 3.59 16 12 C -0.12 -4.04 6.65 32.06 0.21 -3.83 16 13 C 0.14 6.67 5.36 86.93 0.47 7.14 16 14 N -0.62 -33.28 3.26 -691.56 -2.26 -35.53 16 15 C -0.35 -21.19 10.00 84.03 0.84 -20.35 16 16 H 0.05 2.96 7.97 -2.91 -0.02 2.94 16 17 C -0.07 -4.28 5.09 84.86 0.43 -3.85 16 18 N -0.94 -57.82 13.00 21.65 0.28 -57.54 16 19 Si 1.12 52.68 30.00 68.60 2.06 54.74 16 20 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 21 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 23 C 0.13 5.98 6.98 86.73 0.61 6.58 16 24 C 0.14 3.71 11.44 85.45 0.98 4.69 16 25 N -0.32 -8.57 12.58 -56.58 -0.71 -9.29 16 26 N -0.31 -7.52 3.86 -191.79 -0.74 -8.27 16 27 C 0.14 1.98 10.94 83.42 0.91 2.89 16 28 H 0.10 -0.21 8.14 -2.39 -0.02 -0.23 16 29 H 0.10 -0.23 8.10 -2.39 -0.02 -0.25 16 30 H 0.09 -0.22 8.08 -2.39 -0.02 -0.24 16 31 H 0.22 1.48 8.06 -2.91 -0.02 1.45 16 32 H 0.41 12.12 7.54 -92.71 -0.70 11.43 16 33 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 34 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 35 H 0.02 0.77 6.81 -2.38 -0.02 0.76 16 36 H 0.03 1.34 8.07 -2.39 -0.02 1.32 16 37 H 0.26 15.93 6.19 -92.71 -0.57 15.35 16 38 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 39 H 0.00 -0.13 8.04 -2.39 -0.02 -0.15 16 40 H 0.23 4.46 7.46 -2.91 -0.02 4.44 16 41 H 0.22 1.18 8.06 -2.91 -0.02 1.16 16 Total: -1.00 -90.68 348.77 2.62 -88.06 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 0.57 Total: 12.40 kcal Atomic # 6 Polarization: 17.21 SS G_CDS: 7.72 Total: 24.92 kcal Atomic # 7 Polarization: -145.91 SS G_CDS: -7.65 Total: -153.56 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.07 Total: -26.57 kcal Atomic # 14 Polarization: 52.68 SS G_CDS: 2.06 Total: 54.74 kcal Total: -90.68 2.62 -88.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015777004.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.199 kcal (2) G-P(sol) polarization free energy of solvation -90.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds