Wall clock time and date at job start Tue Mar 31 2020 10:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30056 * 124.94204 * 2 1 4 4 C 1.35775 * 109.43414 * 179.97438 * 3 2 1 5 5 C 1.39484 * 133.74677 * 180.02562 * 4 3 2 6 6 C 1.39677 * 118.05073 * 179.97438 * 5 4 3 7 7 C 1.47691 * 120.37986 * 179.97438 * 6 5 4 8 8 O 1.21567 * 120.00318 * 335.56716 * 7 6 5 9 9 N 1.34780 * 119.99921 * 155.56365 * 7 6 5 10 10 C 1.47425 * 125.64928 * 354.23694 * 9 7 6 11 11 C 1.54909 * 104.83383 * 204.09299 * 10 9 7 12 12 C 1.55156 * 101.57999 * 322.99303 * 11 10 9 13 13 H 1.08999 * 110.71953 * 277.13345 * 12 11 10 14 14 N 1.46505 * 110.71573 * 153.86606 * 12 11 10 15 15 C 1.36941 * 119.99815 * 160.02434 * 14 12 11 16 16 H 1.08001 * 119.99763 * 359.97438 * 15 14 12 17 17 C 1.38809 * 119.99928 * 179.97438 * 15 14 12 18 18 N 1.31622 * 120.00072 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 120.00027 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47204 * 89.99666 * 19 17 15 21 21 H 1.48506 * 109.46790 * 209.99875 * 19 17 15 22 22 H 1.48497 * 109.46952 * 329.99392 * 19 17 15 23 23 C 1.47019 * 125.64954 * 174.20227 * 9 7 6 24 24 C 1.39983 * 119.23685 * 0.24456 * 6 5 4 25 25 N 1.31381 * 121.15427 * 359.48052 * 24 6 5 26 26 C 1.32547 * 121.79639 * 0.53544 * 25 24 6 27 27 N 1.36172 * 124.94213 * 180.02562 * 2 1 3 28 28 H 0.96993 * 126.24116 * 359.97438 * 27 2 1 29 29 H 1.09003 * 109.47462 * 90.02416 * 1 2 3 30 30 H 1.09003 * 109.47169 * 210.02036 * 1 2 3 31 31 H 1.08999 * 109.47493 * 330.01779 * 1 2 3 32 32 H 1.07997 * 120.97659 * 359.97438 * 5 4 3 33 33 H 1.09004 * 110.36723 * 322.93792 * 10 9 7 34 34 H 1.08999 * 110.36454 * 85.25144 * 10 9 7 35 35 H 1.09004 * 110.99973 * 81.06680 * 11 10 9 36 36 H 1.08995 * 111.00163 * 204.91701 * 11 10 9 37 37 H 0.97002 * 119.99929 * 340.01493 * 14 12 11 38 38 H 0.96994 * 119.99768 * 180.02562 * 18 17 15 39 39 H 1.09002 * 109.88020 * 298.39165 * 23 9 7 40 40 H 1.09003 * 109.88468 * 59.55476 * 23 9 7 41 41 H 1.08003 * 119.42080 * 179.72713 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2519 1.0661 0.0000 4 6 3.5602 0.7031 0.0006 5 6 4.7590 1.4162 0.0013 6 6 5.9537 0.6925 0.0023 7 6 7.2527 1.3953 0.0025 8 8 7.3314 2.5274 -0.4336 9 7 8.3508 0.7817 0.4863 10 6 8.3774 -0.5340 1.1509 11 6 9.6510 -0.5074 2.0323 12 6 10.6366 0.2829 1.1316 13 1 11.1014 -0.3758 0.3980 14 7 11.6535 0.9568 1.9429 15 6 12.8310 1.3579 1.3703 16 1 13.0101 1.1770 0.3207 17 6 13.7942 1.9968 2.1388 18 7 14.9262 2.3819 1.5886 19 14 13.4846 2.3089 3.9544 20 1 13.9762 1.1529 4.7463 21 1 14.2034 3.5385 4.3749 22 1 12.0281 2.4836 4.1852 23 6 9.7207 1.3131 0.4379 24 6 5.9057 -0.7065 -0.0027 25 7 4.7587 -1.3472 0.0020 26 6 3.5996 -0.7043 0.0010 27 7 2.2869 -1.1162 -0.0005 28 1 1.9741 -2.0343 -0.0006 29 1 -0.3634 -0.0004 -1.0277 30 1 -0.3634 -0.8898 0.5142 31 1 -0.3634 0.8901 0.5135 32 1 4.7634 2.4961 0.0011 33 1 7.4899 -0.6641 1.7703 34 1 8.4446 -1.3315 0.4110 35 1 9.4675 0.0207 2.9681 36 1 10.0170 -1.5167 2.2204 37 1 11.4926 1.1189 2.8857 38 1 15.5994 2.8280 2.1258 39 1 10.0305 1.4456 -0.5988 40 1 9.7678 2.2657 0.9657 41 1 6.8276 -1.2690 -0.0064 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018953624.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:21 Heat of formation + Delta-G solvation = 81.326639 kcal Electronic energy + Delta-G solvation = -25179.000686 eV Core-core repulsion = 21481.671440 eV Total energy + Delta-G solvation = -3697.329246 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.78612 -40.24850 -38.39082 -37.36178 -34.36108 -34.03932 -32.21627 -31.78211 -31.42736 -29.97444 -29.01910 -27.45145 -24.98234 -23.43566 -23.32634 -22.36305 -21.60347 -20.41077 -19.59765 -18.79476 -18.27852 -17.62712 -16.57053 -16.45285 -16.16600 -16.08004 -15.12457 -14.64424 -14.46474 -14.06791 -14.01346 -13.86065 -13.55840 -13.38770 -13.17330 -13.05463 -12.82100 -12.63281 -12.44169 -12.20997 -11.82452 -11.52700 -11.44274 -11.29497 -10.91698 -10.78463 -10.54654 -10.13474 -10.11165 -9.65449 -9.50920 -9.22913 -9.04050 -8.83521 -8.46122 -7.40668 -5.83412 -3.21813 0.39545 0.54850 2.04535 2.28041 2.77621 2.95890 3.34398 3.36688 3.42843 3.55488 3.57536 3.93021 4.21970 4.38693 4.53231 4.54076 4.57918 4.74136 4.76653 4.86617 4.91194 5.01161 5.20843 5.25281 5.28282 5.43547 5.54986 5.56736 5.68952 5.74891 5.77866 5.82950 6.10129 6.13663 6.20135 6.38306 6.55847 6.63483 6.74022 7.26936 7.42456 7.60431 7.90325 8.20422 8.35030 9.11270 9.83318 10.00646 11.34160 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.033710 B = 0.002504 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.413046 B =11178.677651 C =11337.732192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.294 3.706 3 N -0.476 5.476 4 C -0.004 4.004 5 C 0.042 3.958 6 C -0.188 4.188 7 C 0.577 3.423 8 O -0.533 6.533 9 N -0.608 5.608 10 C 0.093 3.907 11 C -0.144 4.144 12 C 0.177 3.823 13 H 0.077 0.923 14 N -0.737 5.737 15 C -0.253 4.253 16 H 0.093 0.907 17 C 0.009 3.991 18 N -0.928 5.928 19 Si 0.884 3.116 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.276 1.276 23 C 0.083 3.917 24 C 0.162 3.838 25 N -0.484 5.484 26 C 0.254 3.746 27 N -0.586 5.586 28 H 0.428 0.572 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.154 0.846 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.364 0.636 38 H 0.261 0.739 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.291 -11.468 -1.586 31.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.026 3.974 3 N -0.197 5.197 4 C -0.124 4.124 5 C 0.014 3.986 6 C -0.196 4.196 7 C 0.365 3.635 8 O -0.410 6.410 9 N -0.341 5.341 10 C -0.030 4.030 11 C -0.183 4.183 12 C 0.066 3.934 13 H 0.094 0.906 14 N -0.378 5.378 15 C -0.383 4.383 16 H 0.111 0.889 17 C -0.187 4.187 18 N -0.575 5.575 19 Si 0.714 3.286 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.203 1.203 23 C -0.041 4.041 24 C -0.006 4.006 25 N -0.197 5.197 26 C 0.018 3.982 27 N -0.201 5.201 28 H 0.268 0.732 29 H 0.111 0.889 30 H 0.102 0.898 31 H 0.119 0.881 32 H 0.172 0.828 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.198 0.802 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -29.394 -10.767 -1.995 31.368 hybrid contribution 0.046 -0.111 1.271 1.277 sum -29.349 -10.878 -0.724 31.308 Atomic orbital electron populations 1.20444 0.83272 1.05158 1.04698 1.23751 0.95871 0.80268 0.97486 1.70469 1.00301 1.27468 1.21465 1.19534 0.92766 0.91614 1.08482 1.20825 0.87366 1.01189 0.89189 1.20681 0.94241 0.95081 1.09636 1.17466 0.82296 0.85302 0.78462 1.90812 1.85201 1.17618 1.47372 1.48417 1.07916 1.20313 1.57493 1.22630 0.99572 0.85247 0.95551 1.23122 0.94371 1.02025 0.98763 1.21192 0.87934 0.91493 0.92824 0.90561 1.42723 1.16424 1.70576 1.08107 1.19072 0.91075 1.31878 0.96278 0.88912 1.24693 0.96158 1.00199 0.97682 1.69699 1.07467 1.44886 1.35446 0.86560 0.77487 0.77807 0.86715 1.20959 1.21637 1.20260 1.23225 0.78706 1.00197 1.02008 1.23407 0.94839 0.90754 0.91643 1.66478 0.95717 1.40445 1.17067 1.19109 0.86199 0.91257 1.01643 1.42705 1.03659 1.10625 1.63092 0.73177 0.88892 0.89773 0.88054 0.82806 0.90558 0.90619 0.90573 0.89445 0.80210 0.92899 0.91558 0.90646 0.80100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.22 10.51 36.00 0.38 0.16 16 2 C 0.29 2.31 8.08 -154.74 -1.25 1.06 16 3 N -0.48 -5.59 11.29 -8.21 -0.09 -5.68 16 4 C 0.00 -0.06 7.23 -84.69 -0.61 -0.67 16 5 C 0.04 0.56 9.75 -38.58 -0.38 0.18 16 6 C -0.19 -2.48 5.67 -104.85 -0.59 -3.08 16 7 C 0.58 9.18 7.64 -12.40 -0.09 9.09 16 8 O -0.53 -10.50 16.99 5.31 0.09 -10.41 16 9 N -0.61 -9.00 3.33 -171.69 -0.57 -9.58 16 10 C 0.09 1.02 4.99 -2.53 -0.01 1.01 16 11 C -0.14 -1.86 6.69 -24.58 -0.16 -2.02 16 12 C 0.18 3.07 3.59 -66.10 -0.24 2.84 16 13 H 0.08 1.31 8.12 -51.93 -0.42 0.89 16 14 N -0.74 -16.36 4.98 -51.65 -0.26 -16.62 16 15 C -0.25 -6.85 10.46 -15.06 -0.16 -7.01 16 16 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 17 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16 18 N -0.93 -28.60 13.97 55.49 0.78 -27.83 16 19 Si 0.88 21.57 27.74 -169.99 -4.71 16.85 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.28 -6.36 6.52 56.52 0.37 -5.99 16 23 C 0.08 1.48 6.63 -3.07 -0.02 1.46 16 24 C 0.16 1.81 9.24 -17.09 -0.16 1.66 16 25 N -0.48 -5.63 10.36 -11.96 -0.12 -5.75 16 26 C 0.25 2.91 8.45 -155.63 -1.31 1.59 16 27 N -0.59 -4.50 6.20 -9.44 -0.06 -4.56 16 28 H 0.43 1.79 8.96 -40.82 -0.37 1.42 16 29 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.08 0.03 8.14 -51.93 -0.42 -0.39 16 31 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.15 2.03 7.90 -52.49 -0.41 1.61 16 33 H 0.08 0.73 6.85 -51.93 -0.36 0.37 16 34 H 0.08 0.65 6.83 -51.93 -0.35 0.29 16 35 H 0.08 1.02 8.00 -51.93 -0.42 0.61 16 36 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.36 7.98 5.57 -40.82 -0.23 7.75 16 38 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.08 1.54 8.03 -51.93 -0.42 1.12 16 41 H 0.18 1.62 4.60 -52.48 -0.24 1.38 16 LS Contribution 341.97 15.07 5.15 5.15 Total: -1.00 -36.23 341.97 -9.43 -45.66 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -4.92 Total: 6.33 kcal Atomic # 6 Polarization: 11.14 SS G_CDS: -4.71 Total: 6.43 kcal Atomic # 7 Polarization: -69.68 SS G_CDS: -0.33 Total: -70.01 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.41 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.71 Total: 16.85 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -36.23 -9.43 -45.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018953624.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.983 kcal (2) G-P(sol) polarization free energy of solvation -36.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds