Wall clock time and date at job start Tue Mar 31 2020 10:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30056 * 124.94204 * 2 1 4 4 C 1.35775 * 109.43414 * 179.97438 * 3 2 1 5 5 C 1.39484 * 133.74677 * 180.02562 * 4 3 2 6 6 C 1.39677 * 118.05073 * 179.97438 * 5 4 3 7 7 C 1.47691 * 120.37986 * 179.97438 * 6 5 4 8 8 O 1.21567 * 120.00318 * 335.56716 * 7 6 5 9 9 N 1.34780 * 119.99921 * 155.56365 * 7 6 5 10 10 C 1.47425 * 125.64928 * 354.23694 * 9 7 6 11 11 C 1.54909 * 104.83383 * 204.09299 * 10 9 7 12 12 C 1.55156 * 101.57999 * 322.99303 * 11 10 9 13 13 H 1.08999 * 110.71953 * 277.13345 * 12 11 10 14 14 N 1.46505 * 110.71573 * 153.86606 * 12 11 10 15 15 C 1.36941 * 119.99815 * 160.02434 * 14 12 11 16 16 H 1.08001 * 119.99763 * 359.97438 * 15 14 12 17 17 C 1.38809 * 119.99928 * 179.97438 * 15 14 12 18 18 N 1.31622 * 120.00072 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 120.00027 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47204 * 89.99666 * 19 17 15 21 21 H 1.48506 * 109.46790 * 209.99875 * 19 17 15 22 22 H 1.48497 * 109.46952 * 329.99392 * 19 17 15 23 23 C 1.47019 * 125.64954 * 174.20227 * 9 7 6 24 24 C 1.39983 * 119.23685 * 0.24456 * 6 5 4 25 25 N 1.31381 * 121.15427 * 359.48052 * 24 6 5 26 26 C 1.32547 * 121.79639 * 0.53544 * 25 24 6 27 27 N 1.36172 * 124.94213 * 180.02562 * 2 1 3 28 28 H 0.96993 * 126.24116 * 359.97438 * 27 2 1 29 29 H 1.09003 * 109.47462 * 90.02416 * 1 2 3 30 30 H 1.09003 * 109.47169 * 210.02036 * 1 2 3 31 31 H 1.08999 * 109.47493 * 330.01779 * 1 2 3 32 32 H 1.07997 * 120.97659 * 359.97438 * 5 4 3 33 33 H 1.09004 * 110.36723 * 322.93792 * 10 9 7 34 34 H 1.08999 * 110.36454 * 85.25144 * 10 9 7 35 35 H 1.09004 * 110.99973 * 81.06680 * 11 10 9 36 36 H 1.08995 * 111.00163 * 204.91701 * 11 10 9 37 37 H 0.97002 * 119.99929 * 340.01493 * 14 12 11 38 38 H 0.96994 * 119.99768 * 180.02562 * 18 17 15 39 39 H 1.09002 * 109.88020 * 298.39165 * 23 9 7 40 40 H 1.09003 * 109.88468 * 59.55476 * 23 9 7 41 41 H 1.08003 * 119.42080 * 179.72713 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2519 1.0661 0.0000 4 6 3.5602 0.7031 0.0006 5 6 4.7590 1.4162 0.0013 6 6 5.9537 0.6925 0.0023 7 6 7.2527 1.3953 0.0025 8 8 7.3314 2.5274 -0.4336 9 7 8.3508 0.7817 0.4863 10 6 8.3774 -0.5340 1.1509 11 6 9.6510 -0.5074 2.0323 12 6 10.6366 0.2829 1.1316 13 1 11.1014 -0.3758 0.3980 14 7 11.6535 0.9568 1.9429 15 6 12.8310 1.3579 1.3703 16 1 13.0101 1.1770 0.3207 17 6 13.7942 1.9968 2.1388 18 7 14.9262 2.3819 1.5886 19 14 13.4846 2.3089 3.9544 20 1 13.9762 1.1529 4.7463 21 1 14.2034 3.5385 4.3749 22 1 12.0281 2.4836 4.1852 23 6 9.7207 1.3131 0.4379 24 6 5.9057 -0.7065 -0.0027 25 7 4.7587 -1.3472 0.0020 26 6 3.5996 -0.7043 0.0010 27 7 2.2869 -1.1162 -0.0005 28 1 1.9741 -2.0343 -0.0006 29 1 -0.3634 -0.0004 -1.0277 30 1 -0.3634 -0.8898 0.5142 31 1 -0.3634 0.8901 0.5135 32 1 4.7634 2.4961 0.0011 33 1 7.4899 -0.6641 1.7703 34 1 8.4446 -1.3315 0.4110 35 1 9.4675 0.0207 2.9681 36 1 10.0170 -1.5167 2.2204 37 1 11.4926 1.1189 2.8857 38 1 15.5994 2.8280 2.1258 39 1 10.0305 1.4456 -0.5988 40 1 9.7678 2.2657 0.9657 41 1 6.8276 -1.2690 -0.0064 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018953624.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:20 Heat of formation + Delta-G solvation = 54.299979 kcal Electronic energy + Delta-G solvation = -25180.172650 eV Core-core repulsion = 21481.671440 eV Total energy + Delta-G solvation = -3698.501210 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.56383 -41.41215 -39.38092 -38.66976 -36.08682 -34.86860 -33.70413 -32.64039 -32.49332 -31.34974 -29.99432 -28.56838 -26.27200 -24.89687 -24.26037 -23.54454 -22.36506 -21.75227 -20.77654 -19.77022 -19.59065 -19.09001 -17.69040 -17.48552 -17.11087 -16.99212 -16.49343 -16.24060 -15.68366 -15.49817 -14.93261 -14.69011 -14.52971 -14.45518 -14.36280 -14.25575 -13.91279 -13.76345 -13.34729 -13.24276 -12.99658 -12.97348 -12.57910 -12.38312 -12.32065 -12.16767 -12.09334 -11.82967 -11.57033 -11.35631 -11.02020 -10.45571 -10.15137 -9.71526 -9.63588 -9.38918 -8.02398 -5.37932 -0.51455 -0.33652 1.36792 1.39073 1.42835 1.49172 1.53656 1.64672 1.79280 2.48666 2.59855 2.85107 3.18901 3.26392 3.39465 3.44551 3.55129 3.64221 3.76224 3.86430 3.94948 4.19961 4.30546 4.34921 4.42442 4.47379 4.60726 4.72522 4.74355 4.78488 4.84455 4.89408 4.97963 5.11049 5.18020 5.20340 5.30121 5.36202 5.77831 6.05046 6.21480 6.40669 6.54053 6.62223 6.95746 7.06852 7.81007 7.98789 9.18556 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.033710 B = 0.002504 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.413046 B =11178.677651 C =11337.732192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.314 3.686 3 N -0.522 5.522 4 C -0.022 4.022 5 C 0.027 3.973 6 C -0.193 4.193 7 C 0.576 3.424 8 O -0.584 6.584 9 N -0.604 5.604 10 C 0.091 3.909 11 C -0.131 4.131 12 C 0.169 3.831 13 H 0.080 0.920 14 N -0.740 5.740 15 C -0.234 4.234 16 H 0.061 0.939 17 C -0.064 4.064 18 N -0.982 5.982 19 Si 0.955 3.045 20 H -0.271 1.271 21 H -0.301 1.301 22 H -0.255 1.255 23 C 0.092 3.908 24 C 0.169 3.831 25 N -0.482 5.482 26 C 0.248 3.752 27 N -0.570 5.570 28 H 0.447 0.553 29 H 0.111 0.889 30 H 0.117 0.883 31 H 0.103 0.897 32 H 0.140 0.860 33 H 0.102 0.898 34 H 0.113 0.887 35 H 0.074 0.926 36 H 0.118 0.882 37 H 0.369 0.631 38 H 0.257 0.743 39 H 0.049 0.951 40 H 0.041 0.959 41 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.875 -14.746 -0.163 36.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.046 3.954 3 N -0.244 5.244 4 C -0.141 4.141 5 C -0.001 4.001 6 C -0.201 4.201 7 C 0.366 3.634 8 O -0.465 6.465 9 N -0.336 5.336 10 C -0.030 4.030 11 C -0.169 4.169 12 C 0.059 3.941 13 H 0.098 0.902 14 N -0.382 5.382 15 C -0.365 4.365 16 H 0.079 0.921 17 C -0.255 4.255 18 N -0.632 5.632 19 Si 0.782 3.218 20 H -0.197 1.197 21 H -0.229 1.229 22 H -0.179 1.179 23 C -0.034 4.034 24 C 0.001 3.999 25 N -0.194 5.194 26 C 0.010 3.990 27 N -0.187 5.187 28 H 0.291 0.709 29 H 0.130 0.870 30 H 0.135 0.865 31 H 0.122 0.878 32 H 0.158 0.842 33 H 0.120 0.880 34 H 0.131 0.869 35 H 0.093 0.907 36 H 0.136 0.864 37 H 0.202 0.798 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -33.068 -14.142 -0.561 35.969 hybrid contribution 0.963 0.873 0.701 1.477 sum -32.105 -13.269 0.141 34.739 Atomic orbital electron populations 1.20753 0.79453 1.06882 1.06361 1.24748 0.97536 0.79289 0.93779 1.70489 1.00158 1.29506 1.24199 1.19668 0.93110 0.92477 1.08873 1.20799 0.88277 1.00827 0.90179 1.20384 0.92346 0.95899 1.11454 1.17894 0.83267 0.84768 0.77495 1.90780 1.86043 1.20009 1.49689 1.48401 1.06321 1.21630 1.57297 1.22990 0.99740 0.83900 0.96339 1.23098 0.93340 1.02666 0.97813 1.21426 0.87652 0.91347 0.93674 0.90216 1.42706 1.15927 1.70927 1.08679 1.19047 0.92453 1.30018 0.94956 0.92109 1.25530 0.96143 1.01080 1.02763 1.69886 1.08907 1.47051 1.37323 0.85418 0.78354 0.77282 0.80732 1.19715 1.22860 1.17925 1.22834 0.80909 0.99102 1.00548 1.23682 0.95756 0.89655 0.90839 1.66598 0.95757 1.40002 1.17061 1.19349 0.87416 0.90933 1.01316 1.42755 1.02154 1.11759 1.62038 0.70946 0.87026 0.86487 0.87838 0.84222 0.87988 0.86943 0.90742 0.86352 0.79751 0.93371 0.93245 0.94008 0.77590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.14 10.51 71.24 0.75 0.61 16 2 C 0.31 4.08 8.08 137.89 1.11 5.20 16 3 N -0.52 -11.74 11.29 -179.88 -2.03 -13.77 16 4 C -0.02 -0.55 7.23 39.46 0.29 -0.26 16 5 C 0.03 0.74 9.75 22.92 0.22 0.96 16 6 C -0.19 -4.98 5.67 -20.01 -0.11 -5.10 16 7 C 0.58 18.58 7.64 86.74 0.66 19.24 16 8 O -0.58 -24.33 16.99 -3.93 -0.07 -24.39 16 9 N -0.60 -17.40 3.33 -815.37 -2.71 -20.11 16 10 C 0.09 1.68 4.99 86.86 0.43 2.11 16 11 C -0.13 -2.91 6.69 31.99 0.21 -2.70 16 12 C 0.17 5.68 3.59 46.18 0.17 5.84 16 13 H 0.08 2.66 8.12 -2.39 -0.02 2.64 16 14 N -0.74 -32.50 4.98 -317.33 -1.58 -34.08 16 15 C -0.23 -12.92 10.46 84.03 0.88 -12.04 16 16 H 0.06 3.68 8.06 -2.91 -0.02 3.66 16 17 C -0.06 -3.70 5.50 84.86 0.47 -3.23 16 18 N -0.98 -62.66 13.97 21.65 0.30 -62.36 16 19 Si 0.95 44.91 27.74 68.60 1.90 46.81 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 21 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 22 H -0.25 -10.87 6.52 99.48 0.65 -10.23 16 23 C 0.09 3.32 6.63 86.73 0.57 3.89 16 24 C 0.17 3.36 9.24 85.18 0.79 4.15 16 25 N -0.48 -9.82 10.36 -191.76 -1.99 -11.81 16 26 C 0.25 5.12 8.45 133.91 1.13 6.25 16 27 N -0.57 -6.98 6.20 -183.78 -1.14 -8.12 16 28 H 0.45 1.96 8.96 -92.71 -0.83 1.13 16 29 H 0.11 -0.10 8.14 -2.39 -0.02 -0.12 16 30 H 0.12 -0.50 8.14 -2.39 -0.02 -0.52 16 31 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.14 4.04 7.90 -2.91 -0.02 4.01 16 33 H 0.10 1.47 6.85 -2.38 -0.02 1.46 16 34 H 0.11 1.34 6.83 -2.39 -0.02 1.32 16 35 H 0.07 1.74 8.00 -2.38 -0.02 1.72 16 36 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.37 15.52 5.57 -92.71 -0.52 15.01 16 38 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 39 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.04 1.78 8.03 -2.39 -0.02 1.76 16 41 H 0.21 2.84 4.60 -2.91 -0.01 2.83 16 Total: -1.00 -84.59 341.97 -0.04 -84.63 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -0.30 Total: 18.27 kcal Atomic # 6 Polarization: 17.35 SS G_CDS: 7.57 Total: 24.92 kcal Atomic # 7 Polarization: -141.09 SS G_CDS: -9.15 Total: -150.24 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.07 Total: -24.39 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.90 Total: 46.81 kcal Total: -84.59 -0.04 -84.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018953624.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.934 kcal (2) G-P(sol) polarization free energy of solvation -84.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds