Wall clock time and date at job start Tue Mar 31 2020 10:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30720 * 126.27294 * 2 1 4 4 N 1.28645 * 110.34166 * 179.97438 * 3 2 1 5 5 C 1.32188 * 109.56670 * 359.97438 * 4 3 2 6 6 C 1.41049 * 133.25832 * 180.02562 * 5 4 3 7 7 C 1.35632 * 119.40548 * 180.02562 * 6 5 4 8 8 C 1.41821 * 119.59681 * 0.27713 * 7 6 5 9 9 C 1.47599 * 119.97995 * 179.71905 * 8 7 6 10 10 O 1.21592 * 120.00017 * 173.02743 * 9 8 7 11 11 N 1.34777 * 120.00000 * 353.03692 * 9 8 7 12 12 C 1.47020 * 125.64840 * 5.47510 * 11 9 8 13 13 C 1.54339 * 107.26447 * 178.84970 * 12 11 9 14 14 C 1.55157 * 103.01971 * 338.14131 * 13 12 11 15 15 H 1.08996 * 111.00293 * 277.22747 * 14 13 12 16 16 N 1.46500 * 111.00158 * 153.37834 * 14 13 12 17 17 C 1.36936 * 120.00113 * 161.34671 * 16 14 13 18 18 H 1.08006 * 119.99551 * 0.02562 * 17 16 14 19 19 C 1.38809 * 120.00349 * 179.97438 * 17 16 14 20 20 N 1.31620 * 119.99872 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00225 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46932 * 60.00222 * 21 19 17 23 23 H 1.48498 * 109.47547 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47100 * 300.00713 * 21 19 17 25 25 C 1.47424 * 125.64594 * 185.78630 * 11 9 8 26 26 C 1.36498 * 120.03603 * 359.45481 * 8 7 6 27 27 N 1.35837 * 120.38624 * 0.52778 * 26 8 7 28 28 H 1.08998 * 109.46986 * 270.02702 * 1 2 3 29 29 H 1.09001 * 109.46982 * 30.02286 * 1 2 3 30 30 H 1.09000 * 109.47094 * 150.02438 * 1 2 3 31 31 H 1.08004 * 120.29804 * 359.97438 * 6 5 4 32 32 H 1.08004 * 120.20080 * 179.97438 * 7 6 5 33 33 H 1.08994 * 109.88124 * 298.39495 * 12 11 9 34 34 H 1.09000 * 109.88263 * 59.56488 * 12 11 9 35 35 H 1.08997 * 110.85017 * 219.67012 * 13 12 11 36 36 H 1.09001 * 110.51309 * 96.45170 * 13 12 11 37 37 H 0.97006 * 120.00579 * 341.35191 * 16 14 13 38 38 H 0.97000 * 119.99850 * 179.97438 * 20 19 17 39 39 H 1.09002 * 110.37015 * 322.92507 * 25 11 9 40 40 H 1.09003 * 110.37014 * 85.14270 * 25 11 9 41 41 H 1.08000 * 119.80616 * 180.30470 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2804 1.0539 0.0000 4 7 3.5175 0.7008 0.0005 5 6 3.6013 -0.6185 0.0015 6 6 4.6877 -1.5180 0.0028 7 6 4.4472 -2.8528 0.0030 8 6 3.1093 -3.3234 -0.0041 9 6 2.8378 -4.7742 -0.0102 10 8 1.6981 -5.1799 0.1116 11 7 3.8533 -5.6492 -0.1506 12 6 5.2819 -5.3044 -0.1924 13 6 6.0678 -6.6251 -0.3348 14 6 5.0673 -7.6861 0.1950 15 1 5.0975 -7.7425 1.2831 16 7 5.3267 -8.9976 -0.4042 17 6 4.8333 -10.1300 0.1869 18 1 4.2526 -10.0562 1.0945 19 6 5.0786 -11.3726 -0.3811 20 7 5.7858 -11.4625 -1.4875 21 14 4.4049 -12.9173 0.4248 22 1 2.9233 -12.8374 0.4868 23 1 4.8040 -14.1055 -0.3715 24 1 4.9521 -13.0370 1.8001 25 6 3.7150 -7.1099 -0.2940 26 6 2.0727 -2.4354 0.0002 27 7 2.3131 -1.0985 0.0004 28 1 -0.3633 0.0005 1.0277 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 5.7021 -1.1472 0.0028 32 1 5.2694 -3.5530 0.0036 33 1 5.4822 -4.6576 -1.0465 34 1 5.5692 -4.8020 0.7313 35 1 6.9704 -6.6071 0.2760 36 1 6.3120 -6.8134 -1.3803 37 1 5.8480 -9.0639 -1.2196 38 1 5.9575 -12.3308 -1.8841 39 1 2.8991 -7.4768 0.3287 40 1 3.5433 -7.3741 -1.3375 41 1 1.0553 -2.7979 -0.0003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019069881.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:46 Heat of formation + Delta-G solvation = 117.671279 kcal Electronic energy + Delta-G solvation = -25359.490164 eV Core-core repulsion = 21663.736940 eV Total energy + Delta-G solvation = -3695.753224 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.93379 -40.50855 -38.22466 -37.42640 -34.96561 -34.23904 -32.48505 -31.55416 -31.05871 -29.91061 -28.11544 -27.74551 -25.34499 -24.21863 -23.74501 -22.67756 -21.96031 -20.44921 -19.89080 -18.84309 -17.63247 -17.44303 -17.07378 -16.37830 -16.26869 -15.86288 -15.25567 -14.76068 -14.61288 -14.44202 -14.02474 -13.67393 -13.61101 -13.35501 -13.14678 -12.87292 -12.81424 -12.69045 -12.41187 -12.35568 -12.06681 -11.50031 -11.29107 -11.18244 -10.91918 -10.86470 -10.78142 -10.45915 -10.17610 -10.13168 -9.90337 -9.84431 -9.11468 -8.68752 -8.39104 -7.18587 -5.92342 -3.23897 0.04856 0.52424 1.76086 2.10680 2.63307 2.87150 3.19815 3.36660 3.41868 3.42198 3.63891 3.95609 4.04128 4.19296 4.27999 4.32917 4.45901 4.66480 4.80277 4.86604 4.94634 4.98656 5.11783 5.23487 5.28047 5.37397 5.44737 5.51002 5.59591 5.60605 5.62624 5.76051 5.86596 5.97734 6.08374 6.18479 6.28382 6.38581 6.44947 6.72839 7.44044 7.57281 7.97158 8.15577 8.24980 9.37241 9.88688 10.23247 11.29357 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.033088 B = 0.002537 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.019389 B =11033.216228 C =11699.924393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.147 3.853 3 N -0.249 5.249 4 N -0.290 5.290 5 C 0.199 3.801 6 C -0.082 4.082 7 C -0.107 4.107 8 C -0.142 4.142 9 C 0.579 3.421 10 O -0.538 6.538 11 N -0.601 5.601 12 C 0.089 3.911 13 C -0.143 4.143 14 C 0.172 3.828 15 H 0.066 0.934 16 N -0.711 5.711 17 C -0.252 4.252 18 H 0.073 0.927 19 C -0.006 4.006 20 N -0.929 5.929 21 Si 0.909 3.091 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.081 3.919 26 C 0.135 3.865 27 N -0.394 5.394 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.081 0.919 31 H 0.163 0.837 32 H 0.187 0.813 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.388 0.612 38 H 0.258 0.742 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.835 20.077 2.275 20.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.115 4.115 3 N -0.088 5.088 4 N -0.134 5.134 5 C -0.050 4.050 6 C -0.103 4.103 7 C -0.130 4.130 8 C -0.149 4.149 9 C 0.366 3.634 10 O -0.417 6.417 11 N -0.333 5.333 12 C -0.034 4.034 13 C -0.182 4.182 14 C 0.060 3.940 15 H 0.084 0.916 16 N -0.350 5.350 17 C -0.383 4.383 18 H 0.091 0.909 19 C -0.203 4.203 20 N -0.576 5.576 21 Si 0.740 3.260 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.211 1.211 25 C -0.044 4.044 26 C 0.009 3.991 27 N -0.074 5.074 28 H 0.108 0.892 29 H 0.118 0.882 30 H 0.100 0.900 31 H 0.181 0.819 32 H 0.203 0.797 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.222 0.778 38 H 0.068 0.932 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -4.205 21.378 2.432 21.923 hybrid contribution -0.578 -2.140 0.043 2.217 sum -4.782 19.238 2.475 19.978 Atomic orbital electron populations 1.20273 0.82748 1.05009 1.04464 1.25040 0.97110 0.80609 1.08765 1.74182 0.96628 1.23361 1.14677 1.74915 1.10813 1.06059 1.21632 1.22570 0.85042 0.92761 1.04642 1.20276 0.97284 0.90658 1.02102 1.22836 0.97710 0.96632 0.95845 1.19555 0.93270 0.94297 1.07759 1.17268 0.84405 0.84046 0.77691 1.90819 1.20776 1.79346 1.50725 1.48332 1.05765 1.08970 1.70256 1.22577 0.81058 0.98816 1.00962 1.22993 0.98764 0.93225 1.03180 1.21310 0.89918 0.85860 0.96932 0.91565 1.42293 1.63130 0.99404 1.30219 1.19197 1.27745 0.84803 1.06554 0.90935 1.24775 1.00279 0.97790 0.97483 1.69643 1.43225 1.24138 1.20629 0.86243 0.78690 0.82634 0.78463 1.21048 1.21590 1.21076 1.23583 1.02837 0.75727 1.02218 1.21699 1.02046 0.79294 0.96041 1.43677 1.09192 1.06772 1.47801 0.89244 0.88181 0.90021 0.81915 0.79713 0.90485 0.90344 0.89703 0.90071 0.77764 0.93202 0.90586 0.90946 0.79866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.40 10.40 36.01 0.37 -0.02 16 2 C 0.15 1.57 8.14 -154.12 -1.25 0.32 16 3 N -0.25 -3.37 12.18 32.97 0.40 -2.97 16 4 N -0.29 -4.08 12.29 31.19 0.38 -3.70 16 5 C 0.20 2.37 7.92 -155.94 -1.23 1.14 16 6 C -0.08 -0.73 10.09 -39.45 -0.40 -1.12 16 7 C -0.11 -0.91 8.56 -39.14 -0.34 -1.25 16 8 C -0.14 -1.52 5.84 -105.34 -0.61 -2.14 16 9 C 0.58 7.96 7.80 -12.44 -0.10 7.86 16 10 O -0.54 -9.15 16.52 5.28 0.09 -9.07 16 11 N -0.60 -8.03 3.33 -175.76 -0.58 -8.61 16 12 C 0.09 0.86 4.85 -3.06 -0.01 0.85 16 13 C -0.14 -1.75 6.57 -24.89 -0.16 -1.91 16 14 C 0.17 2.93 3.69 -65.78 -0.24 2.69 16 15 H 0.07 1.15 8.13 -51.93 -0.42 0.73 16 16 N -0.71 -15.97 5.28 -51.35 -0.27 -16.24 16 17 C -0.25 -6.50 9.98 -15.06 -0.15 -6.66 16 18 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 19 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 20 N -0.93 -26.48 13.06 55.49 0.72 -25.75 16 21 Si 0.91 21.39 29.55 -169.99 -5.02 16.37 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 C 0.08 1.35 6.63 -2.53 -0.02 1.33 16 26 C 0.13 1.37 10.45 -16.41 -0.17 1.20 16 27 N -0.39 -4.34 2.94 -59.37 -0.17 -4.51 16 28 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.16 1.00 8.06 -52.48 -0.42 0.57 16 32 H 0.19 1.20 2.78 -57.73 -0.16 1.04 16 33 H 0.08 0.59 6.73 -51.93 -0.35 0.24 16 34 H 0.08 0.59 6.70 -51.93 -0.35 0.24 16 35 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.08 1.03 8.00 -51.93 -0.42 0.61 16 37 H 0.39 9.22 7.71 -40.82 -0.31 8.91 16 38 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.08 1.40 7.98 -51.93 -0.41 0.99 16 40 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.18 1.59 7.57 -52.49 -0.40 1.19 16 LS Contribution 343.40 15.07 5.17 5.17 Total: -1.00 -33.41 343.40 -8.60 -42.01 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -4.90 Total: 5.27 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: -4.41 Total: 2.02 kcal Atomic # 7 Polarization: -62.26 SS G_CDS: 0.48 Total: -61.78 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.09 Total: -9.07 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.41 -8.60 -42.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019069881.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.686 kcal (2) G-P(sol) polarization free energy of solvation -33.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds