Wall clock time and date at job start Tue Mar 31 2020 10:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30720 * 126.27294 * 2 1 4 4 N 1.28645 * 110.34166 * 179.97438 * 3 2 1 5 5 C 1.32188 * 109.56670 * 359.97438 * 4 3 2 6 6 C 1.41049 * 133.25832 * 180.02562 * 5 4 3 7 7 C 1.35632 * 119.40548 * 180.02562 * 6 5 4 8 8 C 1.41821 * 119.59681 * 0.27713 * 7 6 5 9 9 C 1.47599 * 119.97995 * 179.71905 * 8 7 6 10 10 O 1.21592 * 120.00017 * 173.02743 * 9 8 7 11 11 N 1.34777 * 120.00000 * 353.03692 * 9 8 7 12 12 C 1.47020 * 125.64840 * 5.47510 * 11 9 8 13 13 C 1.54339 * 107.26447 * 178.84970 * 12 11 9 14 14 C 1.55157 * 103.01971 * 338.14131 * 13 12 11 15 15 H 1.08996 * 111.00293 * 277.22747 * 14 13 12 16 16 N 1.46500 * 111.00158 * 153.37834 * 14 13 12 17 17 C 1.36936 * 120.00113 * 161.34671 * 16 14 13 18 18 H 1.08006 * 119.99551 * 0.02562 * 17 16 14 19 19 C 1.38809 * 120.00349 * 179.97438 * 17 16 14 20 20 N 1.31620 * 119.99872 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00225 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46932 * 60.00222 * 21 19 17 23 23 H 1.48498 * 109.47547 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47100 * 300.00713 * 21 19 17 25 25 C 1.47424 * 125.64594 * 185.78630 * 11 9 8 26 26 C 1.36498 * 120.03603 * 359.45481 * 8 7 6 27 27 N 1.35837 * 120.38624 * 0.52778 * 26 8 7 28 28 H 1.08998 * 109.46986 * 270.02702 * 1 2 3 29 29 H 1.09001 * 109.46982 * 30.02286 * 1 2 3 30 30 H 1.09000 * 109.47094 * 150.02438 * 1 2 3 31 31 H 1.08004 * 120.29804 * 359.97438 * 6 5 4 32 32 H 1.08004 * 120.20080 * 179.97438 * 7 6 5 33 33 H 1.08994 * 109.88124 * 298.39495 * 12 11 9 34 34 H 1.09000 * 109.88263 * 59.56488 * 12 11 9 35 35 H 1.08997 * 110.85017 * 219.67012 * 13 12 11 36 36 H 1.09001 * 110.51309 * 96.45170 * 13 12 11 37 37 H 0.97006 * 120.00579 * 341.35191 * 16 14 13 38 38 H 0.97000 * 119.99850 * 179.97438 * 20 19 17 39 39 H 1.09002 * 110.37015 * 322.92507 * 25 11 9 40 40 H 1.09003 * 110.37014 * 85.14270 * 25 11 9 41 41 H 1.08000 * 119.80616 * 180.30470 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2804 1.0539 0.0000 4 7 3.5175 0.7008 0.0005 5 6 3.6013 -0.6185 0.0015 6 6 4.6877 -1.5180 0.0028 7 6 4.4472 -2.8528 0.0030 8 6 3.1093 -3.3234 -0.0041 9 6 2.8378 -4.7742 -0.0102 10 8 1.6981 -5.1799 0.1116 11 7 3.8533 -5.6492 -0.1506 12 6 5.2819 -5.3044 -0.1924 13 6 6.0678 -6.6251 -0.3348 14 6 5.0673 -7.6861 0.1950 15 1 5.0975 -7.7425 1.2831 16 7 5.3267 -8.9976 -0.4042 17 6 4.8333 -10.1300 0.1869 18 1 4.2526 -10.0562 1.0945 19 6 5.0786 -11.3726 -0.3811 20 7 5.7858 -11.4625 -1.4875 21 14 4.4049 -12.9173 0.4248 22 1 2.9233 -12.8374 0.4868 23 1 4.8040 -14.1055 -0.3715 24 1 4.9521 -13.0370 1.8001 25 6 3.7150 -7.1099 -0.2940 26 6 2.0727 -2.4354 0.0002 27 7 2.3131 -1.0985 0.0004 28 1 -0.3633 0.0005 1.0277 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 5.7021 -1.1472 0.0028 32 1 5.2694 -3.5530 0.0036 33 1 5.4822 -4.6576 -1.0465 34 1 5.5692 -4.8020 0.7313 35 1 6.9704 -6.6071 0.2760 36 1 6.3120 -6.8134 -1.3803 37 1 5.8480 -9.0639 -1.2196 38 1 5.9575 -12.3308 -1.8841 39 1 2.8991 -7.4768 0.3287 40 1 3.5433 -7.3741 -1.3375 41 1 1.0553 -2.7979 -0.0003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019069881.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:45 Heat of formation + Delta-G solvation = 96.429889 kcal Electronic energy + Delta-G solvation = -25360.411260 eV Core-core repulsion = 21663.736940 eV Total energy + Delta-G solvation = -3696.674320 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.76327 -41.55247 -39.21460 -38.53735 -36.16686 -35.46631 -33.64955 -32.81583 -31.87811 -31.14759 -29.41527 -28.51406 -26.56229 -25.28192 -25.07583 -23.74629 -22.72635 -21.73618 -20.95025 -19.74785 -19.28349 -18.42007 -17.91912 -17.46955 -17.41067 -16.90938 -16.35316 -15.98695 -15.74307 -15.35060 -15.25108 -15.07514 -14.60006 -14.24664 -14.16156 -13.86711 -13.81071 -13.56370 -13.51041 -13.30707 -13.04441 -12.92355 -12.82393 -12.37260 -12.22555 -12.13157 -12.01040 -11.75639 -11.69673 -11.47408 -11.29244 -10.97198 -10.77505 -9.80114 -9.21079 -9.05744 -7.96490 -5.25743 -0.75127 -0.23844 0.94453 1.23633 1.49314 1.50685 1.56547 1.71881 1.83190 2.32179 2.56014 2.88203 3.14231 3.32250 3.35183 3.40427 3.53946 3.62819 3.65582 3.87927 4.02199 4.21553 4.28452 4.30395 4.36583 4.51901 4.57174 4.59855 4.69143 4.73775 4.82489 4.84412 4.90987 4.97804 5.00806 5.12454 5.21743 5.25830 5.39256 5.54041 5.62190 6.25739 6.38941 6.88696 7.29578 7.33623 8.06027 8.28785 9.25780 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.033088 B = 0.002537 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.019389 B =11033.216228 C =11699.924393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.153 3.847 3 N -0.286 5.286 4 N -0.327 5.327 5 C 0.188 3.812 6 C -0.080 4.080 7 C -0.092 4.092 8 C -0.146 4.146 9 C 0.579 3.421 10 O -0.579 6.579 11 N -0.600 5.600 12 C 0.086 3.914 13 C -0.131 4.131 14 C 0.163 3.837 15 H 0.064 0.936 16 N -0.723 5.723 17 C -0.246 4.246 18 H 0.074 0.926 19 C -0.067 4.067 20 N -0.964 5.964 21 Si 0.966 3.034 22 H -0.282 1.282 23 H -0.296 1.296 24 H -0.277 1.277 25 C 0.093 3.907 26 C 0.140 3.860 27 N -0.400 5.400 28 H 0.105 0.895 29 H 0.110 0.890 30 H 0.098 0.902 31 H 0.193 0.807 32 H 0.211 0.789 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.107 0.893 36 H 0.077 0.923 37 H 0.379 0.621 38 H 0.252 0.748 39 H 0.049 0.951 40 H 0.053 0.947 41 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.334 21.395 3.002 21.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.110 4.110 3 N -0.124 5.124 4 N -0.171 5.171 5 C -0.062 4.062 6 C -0.101 4.101 7 C -0.115 4.115 8 C -0.153 4.153 9 C 0.368 3.632 10 O -0.460 6.460 11 N -0.332 5.332 12 C -0.035 4.035 13 C -0.169 4.169 14 C 0.052 3.948 15 H 0.082 0.918 16 N -0.362 5.362 17 C -0.378 4.378 18 H 0.092 0.908 19 C -0.260 4.260 20 N -0.614 5.614 21 Si 0.796 3.204 22 H -0.209 1.209 23 H -0.222 1.222 24 H -0.203 1.203 25 C -0.033 4.033 26 C 0.015 3.985 27 N -0.080 5.080 28 H 0.123 0.877 29 H 0.129 0.871 30 H 0.117 0.883 31 H 0.210 0.790 32 H 0.227 0.773 33 H 0.129 0.871 34 H 0.133 0.867 35 H 0.125 0.875 36 H 0.096 0.904 37 H 0.212 0.788 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -3.691 22.778 3.190 23.295 hybrid contribution -0.813 -2.469 -0.152 2.604 sum -4.504 20.309 3.039 21.023 Atomic orbital electron populations 1.20533 0.79781 1.06378 1.05879 1.25849 0.98609 0.79948 1.06584 1.74104 0.96985 1.24811 1.16545 1.74810 1.11400 1.07438 1.23455 1.23096 0.86201 0.92668 1.04208 1.20648 0.97812 0.90174 1.01426 1.22987 0.97040 0.96776 0.94735 1.19314 0.94692 0.92235 1.09101 1.17624 0.83718 0.85136 0.76700 1.90800 1.22465 1.80212 1.52553 1.48286 1.07543 1.07321 1.70009 1.22935 0.78133 0.98106 1.04342 1.22933 0.98577 0.92327 1.03111 1.21506 0.91671 0.84937 0.96659 0.91759 1.42421 1.62987 1.00736 1.30044 1.19543 1.26181 0.86014 1.06063 0.90767 1.25476 1.01626 1.00507 0.98434 1.69774 1.45308 1.24087 1.22192 0.85324 0.77997 0.79364 0.77748 1.20877 1.22240 1.20254 1.23077 1.01571 0.78281 1.00350 1.21851 1.02664 0.78950 0.95077 1.43794 1.09172 1.06983 1.48038 0.87663 0.87128 0.88299 0.78989 0.77274 0.87130 0.86710 0.87470 0.90400 0.78794 0.93920 0.93204 0.92873 0.78789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.40 71.24 0.74 0.06 16 2 C 0.15 3.09 8.14 137.68 1.12 4.21 16 3 N -0.29 -7.62 12.18 -49.61 -0.60 -8.22 16 4 N -0.33 -9.01 12.29 -55.22 -0.68 -9.69 16 5 C 0.19 4.15 7.92 134.12 1.06 5.21 16 6 C -0.08 -1.14 10.09 22.36 0.23 -0.91 16 7 C -0.09 -1.20 8.56 22.55 0.19 -1.00 16 8 C -0.15 -2.75 5.84 -20.33 -0.12 -2.87 16 9 C 0.58 14.93 7.80 86.71 0.68 15.60 16 10 O -0.58 -19.46 16.52 -4.01 -0.07 -19.53 16 11 N -0.60 -14.76 3.33 -828.24 -2.75 -17.51 16 12 C 0.09 1.30 4.85 86.73 0.42 1.72 16 13 C -0.13 -2.81 6.57 31.79 0.21 -2.60 16 14 C 0.16 5.38 3.69 46.38 0.17 5.55 16 15 H 0.06 2.16 8.13 -2.39 -0.02 2.14 16 16 N -0.72 -32.55 5.28 -316.37 -1.67 -34.21 16 17 C -0.25 -12.77 9.98 84.03 0.84 -11.93 16 18 H 0.07 3.74 7.83 -2.91 -0.02 3.72 16 19 C -0.07 -3.68 5.50 84.86 0.47 -3.21 16 20 N -0.96 -55.88 13.06 21.65 0.28 -55.60 16 21 Si 0.97 44.37 29.55 68.60 2.03 46.40 16 22 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 23 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 24 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 25 C 0.09 3.08 6.63 86.86 0.58 3.66 16 26 C 0.14 2.57 10.45 83.67 0.87 3.44 16 27 N -0.40 -8.10 2.94 -341.73 -1.00 -9.11 16 28 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.19 1.53 8.06 -2.91 -0.02 1.50 16 32 H 0.21 1.53 2.78 -7.84 -0.02 1.50 16 33 H 0.11 1.07 6.73 -2.39 -0.02 1.06 16 34 H 0.12 1.03 6.70 -2.39 -0.02 1.01 16 35 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.08 1.77 8.00 -2.39 -0.02 1.75 16 37 H 0.38 18.21 7.71 -92.70 -0.71 17.49 16 38 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 39 H 0.05 1.88 7.98 -2.39 -0.02 1.86 16 40 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.20 3.04 7.57 -2.91 -0.02 3.02 16 Total: -1.00 -75.79 343.40 3.35 -72.44 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.36 Total: 18.10 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: 7.46 Total: 16.94 kcal Atomic # 7 Polarization: -127.91 SS G_CDS: -6.43 Total: -134.34 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.07 Total: -19.53 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -75.79 3.35 -72.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019069881.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.871 kcal (2) G-P(sol) polarization free energy of solvation -75.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds