Wall clock time and date at job start Tue Mar 31 2020 10:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35341 * 125.69400 * 2 1 4 4 N 1.36159 * 107.14233 * 179.90259 * 3 2 1 5 5 C 1.36224 * 133.93064 * 180.08868 * 4 3 2 6 6 C 1.35484 * 120.52539 * 180.29785 * 5 4 3 7 7 N 1.32689 * 122.11334 * 359.97438 * 6 5 4 8 8 C 1.32296 * 121.18954 * 0.04311 * 7 6 5 9 9 C 1.47807 * 120.59106 * 180.02562 * 8 7 6 10 10 O 1.21556 * 119.99883 * 179.89806 * 9 8 7 11 11 N 1.34771 * 119.99797 * 359.89755 * 9 8 7 12 12 C 1.47019 * 125.64906 * 359.69582 * 11 9 8 13 13 C 1.54339 * 107.26478 * 178.85042 * 12 11 9 14 14 C 1.55158 * 103.02166 * 338.13782 * 13 12 11 15 15 H 1.08996 * 111.00469 * 277.23899 * 14 13 12 16 16 N 1.46487 * 111.00724 * 153.38219 * 14 13 12 17 17 C 1.36943 * 120.00284 * 161.35193 * 16 14 13 18 18 H 1.07996 * 119.99735 * 0.02562 * 17 16 14 19 19 C 1.38813 * 120.00079 * 180.02562 * 17 16 14 20 20 N 1.31617 * 120.00093 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00006 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47052 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47462 * 119.99272 * 21 19 17 24 24 H 1.48493 * 109.47317 * 239.99519 * 21 19 17 25 25 C 1.47430 * 125.64671 * 179.97438 * 11 9 8 26 26 C 1.37565 * 106.99415 * 0.35521 * 4 3 2 27 27 N 1.31853 * 108.10571 * 359.77739 * 26 4 3 28 28 H 1.09002 * 109.47152 * 269.71559 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.71659 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.71640 * 1 2 3 31 31 H 1.08002 * 126.42421 * 0.03584 * 3 2 1 32 32 H 1.07995 * 119.73664 * 0.26828 * 5 4 3 33 33 H 1.07995 * 118.94003 * 180.02562 * 6 5 4 34 34 H 1.09004 * 109.88283 * 298.38808 * 12 11 9 35 35 H 1.08998 * 109.88898 * 59.56067 * 12 11 9 36 36 H 1.09002 * 110.84993 * 219.66968 * 13 12 11 37 37 H 1.09002 * 110.66846 * 96.52220 * 13 12 11 38 38 H 0.97008 * 120.00202 * 341.35296 * 16 14 13 39 39 H 0.97001 * 120.00363 * 180.02562 * 20 19 17 40 40 H 1.09001 * 110.36452 * 322.93571 * 25 11 9 41 41 H 1.09006 * 110.36503 * 85.14536 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2967 1.0992 0.0000 4 7 3.5875 0.6660 0.0022 5 6 4.7956 1.2953 0.0048 6 6 5.9452 0.5783 0.0005 7 7 5.9488 -0.7486 -0.0057 8 6 4.8189 -1.4368 -0.0090 9 6 4.8384 -2.9147 -0.0153 10 8 3.7938 -3.5363 -0.0164 11 7 6.0144 -3.5731 -0.0200 12 6 7.3456 -2.9492 -0.0258 13 6 8.3858 -4.0892 -0.0001 14 6 7.5825 -5.2824 0.5814 15 1 7.5498 -5.2379 1.6700 16 7 8.1366 -6.5599 0.1267 17 6 7.8390 -7.7142 0.8008 18 1 7.1955 -7.6827 1.6675 19 6 8.3646 -8.9246 0.3702 20 7 9.1485 -8.9631 -0.6863 21 14 7.9592 -10.4990 1.2902 22 1 7.0648 -10.1876 2.4340 23 1 7.2780 -11.4472 0.3726 24 1 9.2129 -11.1137 1.7958 25 6 6.1788 -5.0382 -0.0260 26 6 3.5501 -0.7092 -0.0046 27 7 2.2862 -1.0847 -0.0058 28 1 -0.3633 -0.0051 1.0277 29 1 -0.3633 -0.8874 -0.5182 30 1 -0.3633 0.8926 -0.5094 31 1 1.9651 2.1270 0.0005 32 1 4.8375 2.3745 0.0098 33 1 6.8888 1.1035 0.0031 34 1 7.4707 -2.3509 -0.9283 35 1 7.4647 -2.3214 0.8572 36 1 9.2237 -3.8353 0.6492 37 1 8.7351 -4.3140 -1.0079 38 1 8.7145 -6.5883 -0.6520 39 1 9.5155 -9.8090 -0.9875 40 1 5.4119 -5.5085 0.5894 41 1 6.1334 -5.4208 -1.0457 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019618681.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:23 Heat of formation + Delta-G solvation = 101.547726 kcal Electronic energy + Delta-G solvation = -25483.919852 eV Core-core repulsion = 21787.467457 eV Total energy + Delta-G solvation = -3696.452394 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.31326 -39.86049 -38.59568 -37.18857 -34.76238 -34.03684 -32.11128 -31.54569 -30.14486 -29.50470 -28.31112 -27.52162 -25.26564 -23.77593 -23.52937 -22.42983 -21.18868 -20.30252 -19.73949 -18.61994 -17.95359 -17.19648 -16.63374 -16.19470 -15.88511 -15.74534 -15.48662 -14.66050 -14.48937 -14.19614 -13.86122 -13.69808 -13.40948 -13.35273 -13.11329 -12.80998 -12.71159 -12.54276 -12.30379 -12.15349 -11.56652 -11.50357 -11.03441 -10.84291 -10.70612 -10.42504 -10.35340 -10.20592 -9.93013 -9.76008 -9.71481 -9.09064 -8.97990 -8.54888 -8.25149 -7.04020 -5.80424 -3.10785 -0.21868 0.87061 1.96462 2.43266 2.65609 2.91878 3.44404 3.50936 3.52755 3.53260 3.61752 3.73977 3.90463 4.21128 4.57858 4.65792 4.72662 4.78361 4.84635 5.09687 5.29034 5.35268 5.38596 5.40404 5.43309 5.65621 5.66391 5.70419 5.83377 5.94127 6.12437 6.21485 6.22405 6.34156 6.40915 6.47874 6.59571 6.65809 6.94399 7.14011 7.55073 7.70757 7.74953 8.30869 8.37634 9.49564 10.02882 10.37850 11.41749 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.023836 B = 0.002825 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.431106 B = 9910.717735 C =10898.607343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.058 3.942 3 C -0.085 4.085 4 N -0.356 5.356 5 C 0.028 3.972 6 C 0.029 3.971 7 N -0.422 5.422 8 C 0.190 3.810 9 C 0.575 3.425 10 O -0.503 6.503 11 N -0.590 5.590 12 C 0.119 3.881 13 C -0.144 4.144 14 C 0.172 3.828 15 H 0.065 0.935 16 N -0.712 5.712 17 C -0.246 4.246 18 H 0.074 0.926 19 C -0.010 4.010 20 N -0.931 5.931 21 Si 0.908 3.092 22 H -0.279 1.279 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.083 3.917 26 C 0.196 3.804 27 N -0.431 5.431 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.189 0.811 32 H 0.174 0.826 33 H 0.185 0.815 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.387 0.613 39 H 0.256 0.744 40 H 0.074 0.926 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.932 27.515 0.751 28.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.076 4.076 3 C -0.218 4.218 4 N -0.029 5.029 5 C -0.097 4.097 6 C -0.112 4.112 7 N -0.137 5.137 8 C 0.024 3.976 9 C 0.359 3.641 10 O -0.376 6.376 11 N -0.324 5.324 12 C -0.004 4.004 13 C -0.183 4.183 14 C 0.060 3.940 15 H 0.083 0.917 16 N -0.351 5.351 17 C -0.377 4.377 18 H 0.092 0.908 19 C -0.206 4.206 20 N -0.578 5.578 21 Si 0.739 3.261 22 H -0.204 1.204 23 H -0.218 1.218 24 H -0.218 1.218 25 C -0.042 4.042 26 C -0.052 4.052 27 N -0.151 5.151 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.206 0.794 32 H 0.192 0.808 33 H 0.202 0.798 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.222 0.778 39 H 0.066 0.934 40 H 0.092 0.908 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.016 26.017 0.867 27.549 hybrid contribution -0.381 0.740 0.115 0.841 sum -9.398 26.758 0.982 28.377 Atomic orbital electron populations 1.20186 0.86253 1.03527 1.03113 1.21324 0.97427 0.87623 1.01210 1.22487 0.80300 1.01396 1.17595 1.42830 1.06312 1.08995 1.44813 1.22739 0.83181 1.00717 1.03081 1.22181 0.97651 0.89523 1.01808 1.68434 1.27040 1.08398 1.09878 1.22313 0.83783 0.95055 0.96407 1.16863 0.83654 0.83897 0.79650 1.90903 1.30916 1.66707 1.49119 1.48359 1.05153 1.08986 1.69880 1.22083 0.80927 0.95256 1.02131 1.22990 0.97557 0.95253 1.02499 1.21312 0.89495 0.86238 0.97001 0.91702 1.42323 1.56990 1.01090 1.34746 1.19317 1.24693 0.85262 1.08387 0.90836 1.24766 0.99865 0.97863 0.98113 1.69668 1.36732 1.25425 1.26001 0.86102 0.77459 0.83601 0.78945 1.20392 1.21764 1.21832 1.23537 1.01731 0.76632 1.02292 1.22478 0.94649 0.80200 1.07884 1.70602 0.97784 1.28520 1.18198 0.90421 0.90152 0.90658 0.79361 0.80844 0.79812 0.91209 0.90948 0.90215 0.90569 0.77824 0.93434 0.90758 0.91007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.57 10.42 36.01 0.38 -0.19 16 2 C 0.06 0.67 7.07 -82.87 -0.59 0.08 16 3 C -0.08 -0.77 11.70 -16.66 -0.19 -0.96 16 4 N -0.36 -3.81 2.95 -61.12 -0.18 -3.99 16 5 C 0.03 0.20 11.00 -16.58 -0.18 0.02 16 6 C 0.03 0.22 11.01 -18.16 -0.20 0.02 16 7 N -0.42 -5.02 7.04 -8.68 -0.06 -5.08 16 8 C 0.19 2.88 6.93 -80.53 -0.56 2.32 16 9 C 0.58 10.51 7.84 -12.35 -0.10 10.42 16 10 O -0.50 -10.94 16.48 5.32 0.09 -10.86 16 11 N -0.59 -10.16 3.33 -171.64 -0.57 -10.73 16 12 C 0.12 1.67 5.42 -3.06 -0.02 1.65 16 13 C -0.14 -2.21 6.57 -24.89 -0.16 -2.38 16 14 C 0.17 3.36 3.69 -65.80 -0.24 3.11 16 15 H 0.07 1.29 8.13 -51.93 -0.42 0.87 16 16 N -0.71 -17.37 5.28 -51.37 -0.27 -17.64 16 17 C -0.25 -6.72 9.98 -15.06 -0.15 -6.87 16 18 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 19 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 20 N -0.93 -27.72 13.06 55.49 0.72 -27.00 16 21 Si 0.91 22.39 29.55 -169.99 -5.02 17.36 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 C 0.08 1.62 6.60 -2.54 -0.02 1.60 16 26 C 0.20 2.93 7.66 -153.98 -1.18 1.75 16 27 N -0.43 -6.96 10.74 -7.53 -0.08 -7.04 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.19 0.86 8.06 -52.49 -0.42 0.44 16 32 H 0.17 0.43 8.06 -52.49 -0.42 0.01 16 33 H 0.19 0.69 8.06 -52.49 -0.42 0.27 16 34 H 0.07 0.90 7.58 -51.93 -0.39 0.51 16 35 H 0.07 0.93 7.42 -51.93 -0.39 0.54 16 36 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.08 1.19 7.99 -51.93 -0.42 0.77 16 38 H 0.39 9.94 7.71 -40.82 -0.31 9.62 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.07 1.56 8.04 -51.93 -0.42 1.14 16 41 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 LS Contribution 349.03 15.07 5.26 5.26 Total: -1.00 -35.88 349.03 -8.70 -44.58 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -5.28 Total: 4.92 kcal Atomic # 6 Polarization: 13.52 SS G_CDS: -3.31 Total: 10.21 kcal Atomic # 7 Polarization: -71.04 SS G_CDS: -0.44 Total: -71.47 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.88 -8.70 -44.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019618681.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.131 kcal (2) G-P(sol) polarization free energy of solvation -35.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds