Wall clock time and date at job start Tue Mar 31 2020 10:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35341 * 125.69400 * 2 1 4 4 N 1.36159 * 107.14233 * 179.90259 * 3 2 1 5 5 C 1.36224 * 133.93064 * 180.08868 * 4 3 2 6 6 C 1.35484 * 120.52539 * 180.29785 * 5 4 3 7 7 N 1.32689 * 122.11334 * 359.97438 * 6 5 4 8 8 C 1.32296 * 121.18954 * 0.04311 * 7 6 5 9 9 C 1.47807 * 120.59106 * 180.02562 * 8 7 6 10 10 O 1.21556 * 119.99883 * 179.89806 * 9 8 7 11 11 N 1.34771 * 119.99797 * 359.89755 * 9 8 7 12 12 C 1.47019 * 125.64906 * 359.69582 * 11 9 8 13 13 C 1.54339 * 107.26478 * 178.85042 * 12 11 9 14 14 C 1.55158 * 103.02166 * 338.13782 * 13 12 11 15 15 H 1.08996 * 111.00469 * 277.23899 * 14 13 12 16 16 N 1.46487 * 111.00724 * 153.38219 * 14 13 12 17 17 C 1.36943 * 120.00284 * 161.35193 * 16 14 13 18 18 H 1.07996 * 119.99735 * 0.02562 * 17 16 14 19 19 C 1.38813 * 120.00079 * 180.02562 * 17 16 14 20 20 N 1.31617 * 120.00093 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00006 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47052 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47462 * 119.99272 * 21 19 17 24 24 H 1.48493 * 109.47317 * 239.99519 * 21 19 17 25 25 C 1.47430 * 125.64671 * 179.97438 * 11 9 8 26 26 C 1.37565 * 106.99415 * 0.35521 * 4 3 2 27 27 N 1.31853 * 108.10571 * 359.77739 * 26 4 3 28 28 H 1.09002 * 109.47152 * 269.71559 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.71659 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.71640 * 1 2 3 31 31 H 1.08002 * 126.42421 * 0.03584 * 3 2 1 32 32 H 1.07995 * 119.73664 * 0.26828 * 5 4 3 33 33 H 1.07995 * 118.94003 * 180.02562 * 6 5 4 34 34 H 1.09004 * 109.88283 * 298.38808 * 12 11 9 35 35 H 1.08998 * 109.88898 * 59.56067 * 12 11 9 36 36 H 1.09002 * 110.84993 * 219.66968 * 13 12 11 37 37 H 1.09002 * 110.66846 * 96.52220 * 13 12 11 38 38 H 0.97008 * 120.00202 * 341.35296 * 16 14 13 39 39 H 0.97001 * 120.00363 * 180.02562 * 20 19 17 40 40 H 1.09001 * 110.36452 * 322.93571 * 25 11 9 41 41 H 1.09006 * 110.36503 * 85.14536 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2967 1.0992 0.0000 4 7 3.5875 0.6660 0.0022 5 6 4.7956 1.2953 0.0048 6 6 5.9452 0.5783 0.0005 7 7 5.9488 -0.7486 -0.0057 8 6 4.8189 -1.4368 -0.0090 9 6 4.8384 -2.9147 -0.0153 10 8 3.7938 -3.5363 -0.0164 11 7 6.0144 -3.5731 -0.0200 12 6 7.3456 -2.9492 -0.0258 13 6 8.3858 -4.0892 -0.0001 14 6 7.5825 -5.2824 0.5814 15 1 7.5498 -5.2379 1.6700 16 7 8.1366 -6.5599 0.1267 17 6 7.8390 -7.7142 0.8008 18 1 7.1955 -7.6827 1.6675 19 6 8.3646 -8.9246 0.3702 20 7 9.1485 -8.9631 -0.6863 21 14 7.9592 -10.4990 1.2902 22 1 7.0648 -10.1876 2.4340 23 1 7.2780 -11.4472 0.3726 24 1 9.2129 -11.1137 1.7958 25 6 6.1788 -5.0382 -0.0260 26 6 3.5501 -0.7092 -0.0046 27 7 2.2862 -1.0847 -0.0058 28 1 -0.3633 -0.0051 1.0277 29 1 -0.3633 -0.8874 -0.5182 30 1 -0.3633 0.8926 -0.5094 31 1 1.9651 2.1270 0.0005 32 1 4.8375 2.3745 0.0098 33 1 6.8888 1.1035 0.0031 34 1 7.4707 -2.3509 -0.9283 35 1 7.4647 -2.3214 0.8572 36 1 9.2237 -3.8353 0.6492 37 1 8.7351 -4.3140 -1.0079 38 1 8.7145 -6.5883 -0.6520 39 1 9.5155 -9.8090 -0.9875 40 1 5.4119 -5.5085 0.5894 41 1 6.1334 -5.4208 -1.0457 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019618681.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:22 Heat of formation + Delta-G solvation = 76.076089 kcal Electronic energy + Delta-G solvation = -25485.024385 eV Core-core repulsion = 21787.467457 eV Total energy + Delta-G solvation = -3697.556927 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.10974 -41.15179 -39.48799 -38.67612 -35.99572 -35.52304 -33.36935 -32.81872 -31.31156 -30.79984 -29.22347 -28.88930 -26.52502 -25.35647 -24.38552 -23.79112 -22.06038 -21.69407 -20.97149 -19.46440 -19.37422 -18.85732 -17.61128 -17.27202 -17.24281 -16.77254 -16.42992 -16.27573 -15.63741 -15.35413 -15.17658 -14.84272 -14.66748 -14.46386 -14.25650 -14.06291 -13.82033 -13.71113 -13.41236 -13.17500 -13.11484 -12.90339 -12.56332 -12.45387 -12.33854 -12.04649 -11.80056 -11.64462 -11.43135 -11.27193 -11.03333 -10.83094 -9.92805 -9.66921 -9.24810 -9.07866 -7.97448 -5.27300 -1.06990 0.10615 1.18915 1.47102 1.48682 1.50063 1.58274 1.73546 1.78384 2.50626 2.54400 2.73356 2.88044 3.17966 3.34298 3.60772 3.68355 3.82249 4.01099 4.07756 4.10488 4.17610 4.24681 4.31573 4.41695 4.57471 4.69880 4.77296 4.80994 4.84637 4.95472 5.02362 5.05061 5.05953 5.18808 5.26347 5.39852 5.49128 5.53362 5.74675 6.24695 6.31423 6.44819 6.75644 6.97328 7.32091 8.02777 8.27969 9.25476 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.023836 B = 0.002825 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.431106 B = 9910.717735 C =10898.607343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.029 3.971 3 C -0.062 4.062 4 N -0.356 5.356 5 C 0.065 3.935 6 C 0.011 3.989 7 N -0.409 5.409 8 C 0.136 3.864 9 C 0.572 3.428 10 O -0.559 6.559 11 N -0.593 5.593 12 C 0.128 3.872 13 C -0.130 4.130 14 C 0.167 3.833 15 H 0.064 0.936 16 N -0.722 5.722 17 C -0.246 4.246 18 H 0.073 0.927 19 C -0.069 4.069 20 N -0.964 5.964 21 Si 0.970 3.030 22 H -0.269 1.269 23 H -0.295 1.295 24 H -0.289 1.289 25 C 0.093 3.907 26 C 0.167 3.833 27 N -0.499 5.499 28 H 0.085 0.915 29 H 0.059 0.941 30 H 0.110 0.890 31 H 0.244 0.756 32 H 0.236 0.764 33 H 0.234 0.766 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.104 0.896 37 H 0.075 0.925 38 H 0.379 0.621 39 H 0.253 0.747 40 H 0.047 0.953 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.336 32.517 1.393 33.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.103 4.103 3 C -0.194 4.194 4 N -0.030 5.030 5 C -0.060 4.060 6 C -0.130 4.130 7 N -0.125 5.125 8 C -0.027 4.027 9 C 0.358 3.642 10 O -0.436 6.436 11 N -0.325 5.325 12 C 0.007 3.993 13 C -0.169 4.169 14 C 0.057 3.943 15 H 0.081 0.919 16 N -0.361 5.361 17 C -0.378 4.378 18 H 0.091 0.909 19 C -0.261 4.261 20 N -0.614 5.614 21 Si 0.799 3.201 22 H -0.194 1.194 23 H -0.222 1.222 24 H -0.215 1.215 25 C -0.033 4.033 26 C -0.080 4.080 27 N -0.221 5.221 28 H 0.103 0.897 29 H 0.078 0.922 30 H 0.129 0.871 31 H 0.260 0.740 32 H 0.253 0.747 33 H 0.250 0.750 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.122 0.878 37 H 0.093 0.907 38 H 0.212 0.788 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.439 31.054 1.531 32.217 hybrid contribution -0.616 -0.508 -0.082 0.802 sum -9.055 30.546 1.450 31.893 Atomic orbital electron populations 1.20293 0.84407 1.04283 1.03792 1.22038 0.98994 0.87678 1.01626 1.23268 0.79014 1.02691 1.14451 1.43180 1.08096 1.07653 1.44106 1.23840 0.81372 1.03334 0.97503 1.23069 1.00156 0.87926 1.01871 1.68274 1.25861 1.10752 1.07565 1.21406 0.85301 0.93032 1.02969 1.17436 0.82805 0.85782 0.78143 1.90843 1.32677 1.68479 1.51589 1.48365 1.06463 1.07756 1.69955 1.22207 0.78509 0.94697 1.03917 1.22937 0.98036 0.93321 1.02567 1.21441 0.89905 0.86036 0.96950 0.91850 1.42427 1.57152 1.02100 1.34388 1.19631 1.23601 0.86482 1.08078 0.90865 1.25518 1.00545 1.00793 0.99289 1.69800 1.38252 1.25781 1.27606 0.85129 0.77222 0.79856 0.77888 1.19384 1.22216 1.21549 1.23101 1.00960 0.78768 1.00438 1.22351 0.94136 0.82308 1.09203 1.70508 0.99422 1.31526 1.20602 0.89681 0.92176 0.87097 0.74027 0.74733 0.75011 0.89418 0.88956 0.87776 0.90675 0.78767 0.93844 0.93446 0.93049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.03 10.42 71.24 0.74 -0.29 16 2 C 0.03 0.64 7.07 41.63 0.29 0.94 16 3 C -0.06 -0.89 11.70 83.35 0.98 0.09 16 4 N -0.36 -6.40 2.95 -347.29 -1.02 -7.43 16 5 C 0.06 0.54 11.00 83.37 0.92 1.45 16 6 C 0.01 0.12 11.01 83.93 0.92 1.04 16 7 N -0.41 -8.77 7.04 -181.36 -1.28 -10.05 16 8 C 0.14 4.16 6.93 43.69 0.30 4.47 16 9 C 0.57 22.30 7.84 86.78 0.68 22.98 16 10 O -0.56 -26.75 16.48 -3.89 -0.06 -26.82 16 11 N -0.59 -21.27 3.33 -815.24 -2.71 -23.98 16 12 C 0.13 3.45 5.42 86.73 0.47 3.92 16 13 C -0.13 -3.87 6.57 31.79 0.21 -3.66 16 14 C 0.17 6.71 3.69 46.38 0.17 6.88 16 15 H 0.06 2.57 8.13 -2.39 -0.02 2.55 16 16 N -0.72 -36.27 5.28 -316.43 -1.67 -37.94 16 17 C -0.25 -13.82 9.98 84.03 0.84 -12.98 16 18 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 19 C -0.07 -3.97 5.50 84.86 0.47 -3.51 16 20 N -0.96 -58.86 13.06 21.65 0.28 -58.58 16 21 Si 0.97 47.00 29.55 68.60 2.03 49.03 16 22 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 23 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 24 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 25 C 0.09 3.89 6.60 86.85 0.57 4.46 16 26 C 0.17 5.02 7.66 135.58 1.04 6.06 16 27 N -0.50 -16.89 10.74 -177.73 -1.91 -18.80 16 28 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.11 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.24 0.57 8.06 -2.91 -0.02 0.55 16 32 H 0.24 -0.96 8.06 -2.91 -0.02 -0.98 16 33 H 0.23 0.10 8.06 -2.91 -0.02 0.08 16 34 H 0.09 2.08 7.58 -2.38 -0.02 2.07 16 35 H 0.09 2.15 7.42 -2.39 -0.02 2.13 16 36 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.07 2.28 7.99 -2.39 -0.02 2.26 16 38 H 0.38 20.07 7.71 -92.70 -0.71 19.36 16 39 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 40 H 0.05 2.18 8.04 -2.39 -0.02 2.16 16 41 H 0.05 2.32 8.14 -2.38 -0.02 2.30 16 Total: -1.00 -87.71 349.03 2.61 -85.10 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 0.35 Total: 17.61 kcal Atomic # 6 Polarization: 23.25 SS G_CDS: 8.60 Total: 31.86 kcal Atomic # 7 Polarization: -148.47 SS G_CDS: -8.31 Total: -156.78 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -0.06 Total: -26.82 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Total: -87.71 2.61 -85.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019618681.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.174 kcal (2) G-P(sol) polarization free energy of solvation -87.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds