Wall clock time and date at job start Tue Mar 31 2020 10:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30058 * 124.93778 * 2 1 4 4 C 1.35783 * 109.42985 * 179.97438 * 3 2 1 5 5 C 1.39482 * 133.73988 * 179.97438 * 4 3 2 6 6 C 1.39679 * 118.05015 * 179.97438 * 5 4 3 7 7 C 1.47696 * 120.38012 * 180.02562 * 6 5 4 8 8 O 1.21568 * 120.00184 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99528 * 180.02562 * 7 6 5 10 10 C 1.46497 * 119.99697 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47319 * 180.02562 * 10 9 7 12 12 C 1.53945 * 113.73857 * 273.74064 * 11 10 9 13 13 N 1.47808 * 86.03447 * 222.07916 * 12 11 10 14 14 C 1.36939 * 134.45834 * 204.64106 * 13 12 11 15 15 H 1.07998 * 119.99944 * 179.86904 * 14 13 12 16 16 C 1.38815 * 119.99739 * 359.87322 * 14 13 12 17 17 N 1.31621 * 120.00173 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00051 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47091 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47107 * 119.99478 * 18 16 14 21 21 H 1.48495 * 109.47308 * 240.00143 * 18 16 14 22 22 C 1.47581 * 91.05456 * 24.54917 * 13 12 11 23 23 C 1.39977 * 119.23233 * 0.08013 * 6 5 4 24 24 N 1.31388 * 121.16064 * 359.93709 * 23 6 5 25 25 C 1.32541 * 121.79279 * 0.02562 * 24 23 6 26 26 N 1.36159 * 124.94438 * 179.69350 * 2 1 3 27 27 H 0.96998 * 126.24111 * 0.02562 * 26 2 1 28 28 H 1.08999 * 109.46995 * 90.02538 * 1 2 3 29 29 H 1.08994 * 109.46790 * 210.02225 * 1 2 3 30 30 H 1.08997 * 109.47305 * 330.02666 * 1 2 3 31 31 H 1.08001 * 120.97802 * 359.97438 * 5 4 3 32 32 H 0.96997 * 120.00131 * 359.97438 * 9 7 6 33 33 H 1.09006 * 109.47171 * 299.99774 * 10 9 7 34 34 H 1.09000 * 109.47454 * 59.99774 * 10 9 7 35 35 H 1.09000 * 112.94388 * 45.32815 * 11 10 9 36 36 H 1.08994 * 113.77031 * 336.34969 * 12 11 10 37 37 H 1.09001 * 113.77061 * 107.74347 * 12 11 10 38 38 H 0.97002 * 119.99939 * 180.02562 * 17 16 14 39 39 H 1.08990 * 113.77473 * 221.15186 * 22 13 12 40 40 H 1.09000 * 113.76555 * 89.74500 * 22 13 12 41 41 H 1.07998 * 119.41895 * 179.97438 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2519 1.0662 0.0000 4 6 3.5603 0.7031 0.0006 5 6 4.7590 1.4163 0.0004 6 6 5.9538 0.6928 0.0017 7 6 7.2527 1.3958 0.0022 8 8 7.2862 2.6110 0.0018 9 7 8.4009 0.6899 0.0029 10 6 9.6893 1.3872 0.0039 11 6 10.8244 0.3613 0.0040 12 6 11.2218 -0.1231 1.4102 13 7 12.6193 -0.0096 0.9424 14 6 13.8022 -0.5976 1.3032 15 1 14.7145 -0.3364 0.7876 16 6 13.8287 -1.5296 2.3317 17 7 12.7170 -1.8477 2.9604 18 14 15.4422 -2.3323 2.8235 19 1 16.5370 -1.8074 1.9684 20 1 15.7344 -2.0250 4.2466 21 1 15.3378 -3.8029 2.6458 22 6 12.2278 0.9896 -0.0706 23 6 5.9058 -0.7061 0.0015 24 7 4.7588 -1.3470 0.0013 25 6 3.5997 -0.7042 0.0007 26 7 2.2870 -1.1161 0.0060 27 1 1.9741 -2.0342 0.0105 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3634 0.8902 0.5134 31 1 4.7632 2.4963 -0.0008 32 1 8.3741 -0.2797 0.0036 33 1 9.7649 2.0121 -0.8860 34 1 9.7636 2.0120 0.8940 35 1 10.6668 -0.4468 -0.7103 36 1 10.9661 0.5777 2.2048 37 1 10.9114 -1.1453 1.6268 38 1 12.7356 -2.4986 3.6793 39 1 12.7190 0.8542 -1.0341 40 1 12.2682 2.0180 0.2882 41 1 6.8277 -1.2686 0.0021 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031721041.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:28 Heat of formation + Delta-G solvation = 77.959820 kcal Electronic energy + Delta-G solvation = -24568.620512 eV Core-core repulsion = 20871.145270 eV Total energy + Delta-G solvation = -3697.475242 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.53896 -41.11320 -39.76211 -38.98899 -35.84712 -34.83530 -34.18831 -32.68579 -32.46504 -30.65655 -29.16480 -27.50412 -26.50310 -25.19563 -24.15289 -23.60662 -22.30709 -21.77326 -20.72679 -19.57216 -19.09773 -18.69189 -17.86889 -17.28094 -17.07752 -16.94129 -16.63894 -16.26683 -15.74857 -15.52707 -14.87008 -14.78437 -14.59723 -14.44293 -14.33705 -14.17733 -13.97494 -13.30389 -13.28946 -13.06362 -12.97773 -12.87695 -12.51700 -12.34947 -12.24123 -12.17110 -11.81535 -11.57218 -11.31881 -11.13451 -10.85371 -10.41966 -10.24206 -9.94966 -9.62667 -8.88715 -7.88981 -5.21464 -0.48832 -0.32481 1.38943 1.46783 1.47476 1.56239 1.57658 1.77421 2.02653 2.48897 2.69257 2.90371 3.21422 3.32419 3.42329 3.50736 3.61391 3.70206 3.82958 3.89958 4.08682 4.22857 4.40766 4.43799 4.63576 4.73339 4.78561 4.79331 4.83195 4.86672 4.91431 4.94696 5.12317 5.14181 5.28947 5.30222 5.39625 5.58487 5.69623 5.97246 6.05865 6.47631 6.56048 6.64086 6.95117 7.13017 7.63196 8.59071 9.28065 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.025974 B = 0.002261 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.759345 B =12379.929232 C =13205.563793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.313 3.687 3 N -0.519 5.519 4 C -0.023 4.023 5 C 0.033 3.967 6 C -0.198 4.198 7 C 0.571 3.429 8 O -0.575 6.575 9 N -0.705 5.705 10 C 0.141 3.859 11 C -0.115 4.115 12 C 0.164 3.836 13 N -0.646 5.646 14 C -0.232 4.232 15 H 0.083 0.917 16 C -0.070 4.070 17 N -0.953 5.953 18 Si 0.977 3.023 19 H -0.266 1.266 20 H -0.295 1.295 21 H -0.290 1.290 22 C 0.126 3.874 23 C 0.176 3.824 24 N -0.491 5.491 25 C 0.245 3.755 26 N -0.573 5.573 27 H 0.445 0.555 28 H 0.112 0.888 29 H 0.114 0.886 30 H 0.104 0.896 31 H 0.148 0.852 32 H 0.413 0.587 33 H 0.081 0.919 34 H 0.057 0.943 35 H 0.108 0.892 36 H 0.012 0.988 37 H 0.046 0.954 38 H 0.248 0.752 39 H 0.063 0.937 40 H 0.047 0.953 41 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.421 0.091 -8.978 27.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.045 3.955 3 N -0.240 5.240 4 C -0.142 4.142 5 C 0.005 3.995 6 C -0.206 4.206 7 C 0.358 3.642 8 O -0.456 6.456 9 N -0.356 5.356 10 C 0.017 3.983 11 C -0.134 4.134 12 C 0.039 3.961 13 N -0.373 5.373 14 C -0.360 4.360 15 H 0.101 0.899 16 C -0.262 4.262 17 N -0.602 5.602 18 Si 0.806 3.194 19 H -0.190 1.190 20 H -0.223 1.223 21 H -0.217 1.217 22 C 0.000 4.000 23 C 0.007 3.993 24 N -0.203 5.203 25 C 0.007 3.993 26 N -0.189 5.189 27 H 0.289 0.711 28 H 0.131 0.869 29 H 0.133 0.867 30 H 0.123 0.877 31 H 0.166 0.834 32 H 0.251 0.749 33 H 0.099 0.901 34 H 0.075 0.925 35 H 0.126 0.874 36 H 0.030 0.970 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -26.493 0.715 -8.821 27.932 hybrid contribution 1.343 -1.076 0.830 1.911 sum -25.149 -0.361 -7.991 26.391 Atomic orbital electron populations 1.20751 0.79443 1.06832 1.06395 1.24757 0.97554 0.79289 0.93910 1.70493 1.00114 1.29309 1.24121 1.19737 0.93325 0.92275 1.08865 1.20871 0.88008 1.01162 0.89470 1.20529 0.93285 0.95410 1.11354 1.17954 0.83874 0.86459 0.75925 1.90766 1.87945 1.14839 1.52050 1.45799 1.05031 1.11108 1.73701 1.21275 0.80417 0.94392 1.02206 1.23419 0.93033 0.98278 0.98685 1.22302 0.83130 0.98246 0.92469 1.46425 1.04745 1.45909 1.40213 1.19468 0.86533 1.16445 1.13599 0.89917 1.25611 1.00517 1.01139 0.98981 1.69997 1.26992 1.36955 1.26275 0.85028 0.79318 0.77758 0.77342 1.18993 1.22276 1.21737 1.22702 0.91672 0.92653 0.92932 1.23141 0.95294 0.89952 0.90877 1.66493 0.96077 1.40537 1.17201 1.19350 0.87293 0.91165 1.01488 1.42787 1.02282 1.11785 1.62043 0.71112 0.86923 0.86711 0.87729 0.83380 0.74898 0.90050 0.92483 0.87356 0.97038 0.93522 0.94327 0.91886 0.93526 0.78601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.19 10.51 71.24 0.75 0.56 16 2 C 0.31 4.33 8.08 137.90 1.11 5.45 16 3 N -0.52 -11.77 11.29 -179.88 -2.03 -13.80 16 4 C -0.02 -0.57 7.23 39.46 0.29 -0.28 16 5 C 0.03 0.85 9.75 22.92 0.22 1.08 16 6 C -0.20 -4.89 5.89 -20.01 -0.12 -5.01 16 7 C 0.57 16.09 7.77 86.74 0.67 16.77 16 8 O -0.58 -20.33 16.40 -3.93 -0.06 -20.40 16 9 N -0.71 -17.67 5.51 -466.11 -2.57 -20.23 16 10 C 0.14 4.01 5.51 86.38 0.48 4.49 16 11 C -0.11 -3.76 3.93 -10.13 -0.04 -3.80 16 12 C 0.16 7.42 7.08 86.44 0.61 8.03 16 13 N -0.65 -32.54 3.70 -716.23 -2.65 -35.19 16 14 C -0.23 -12.96 10.70 84.03 0.90 -12.06 16 15 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 16 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 17 N -0.95 -57.14 11.39 21.65 0.25 -56.90 16 18 Si 0.98 45.73 29.55 68.60 2.03 47.76 16 19 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 20 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 21 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 22 C 0.13 4.75 8.51 86.49 0.74 5.49 16 23 C 0.18 3.75 10.69 85.18 0.91 4.66 16 24 N -0.49 -11.22 10.36 -191.77 -1.99 -13.21 16 25 C 0.24 5.45 8.45 133.91 1.13 6.58 16 26 N -0.57 -7.95 6.20 -183.79 -1.14 -9.09 16 27 H 0.45 2.89 8.96 -92.71 -0.83 2.06 16 28 H 0.11 -0.05 8.14 -2.39 -0.02 -0.07 16 29 H 0.11 -0.35 8.14 -2.39 -0.02 -0.37 16 30 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.15 3.96 7.72 -2.91 -0.02 3.93 16 32 H 0.41 8.33 6.51 -92.71 -0.60 7.73 16 33 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 34 H 0.06 1.83 7.88 -2.39 -0.02 1.81 16 35 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 36 H 0.01 0.56 7.92 -2.39 -0.02 0.55 16 37 H 0.05 2.34 7.17 -2.39 -0.02 2.32 16 38 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 39 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.05 1.70 8.10 -2.39 -0.02 1.68 16 41 H 0.20 2.98 6.39 -2.91 -0.02 2.96 16 Total: -1.00 -80.75 350.96 -0.39 -81.14 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -0.34 Total: 11.49 kcal Atomic # 6 Polarization: 20.31 SS G_CDS: 8.12 Total: 28.43 kcal Atomic # 7 Polarization: -138.29 SS G_CDS: -10.13 Total: -148.43 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.06 Total: -20.40 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -80.75 -0.39 -81.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031721041.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.097 kcal (2) G-P(sol) polarization free energy of solvation -80.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds