Wall clock time and date at job start Tue Mar 31 2020 10:49:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50706 * 1
3 3 N 1.30058 * 124.93778 * 2 1
4 4 C 1.35783 * 109.42985 * 179.97438 * 3 2 1
5 5 C 1.39482 * 133.73988 * 179.97438 * 4 3 2
6 6 C 1.39679 * 118.05015 * 179.97438 * 5 4 3
7 7 C 1.47696 * 120.38012 * 180.02562 * 6 5 4
8 8 O 1.21568 * 120.00184 * 0.02562 * 7 6 5
9 9 N 1.34778 * 119.99528 * 180.02562 * 7 6 5
10 10 C 1.46497 * 119.99697 * 180.02562 * 9 7 6
11 11 C 1.53001 * 109.47319 * 180.02562 * 10 9 7
12 12 C 1.53945 * 113.73857 * 273.74064 * 11 10 9
13 13 N 1.47808 * 86.03447 * 222.07916 * 12 11 10
14 14 C 1.36939 * 134.45834 * 204.64106 * 13 12 11
15 15 H 1.07998 * 119.99944 * 179.86904 * 14 13 12
16 16 C 1.38815 * 119.99739 * 359.87322 * 14 13 12
17 17 N 1.31621 * 120.00173 * 359.97438 * 16 14 13
18 18 Si 1.86801 * 120.00051 * 179.97438 * 16 14 13
19 19 H 1.48502 * 109.47091 * 359.97438 * 18 16 14
20 20 H 1.48501 * 109.47107 * 119.99478 * 18 16 14
21 21 H 1.48495 * 109.47308 * 240.00143 * 18 16 14
22 22 C 1.47581 * 91.05456 * 24.54917 * 13 12 11
23 23 C 1.39977 * 119.23233 * 0.08013 * 6 5 4
24 24 N 1.31388 * 121.16064 * 359.93709 * 23 6 5
25 25 C 1.32541 * 121.79279 * 0.02562 * 24 23 6
26 26 N 1.36159 * 124.94438 * 179.69350 * 2 1 3
27 27 H 0.96998 * 126.24111 * 0.02562 * 26 2 1
28 28 H 1.08999 * 109.46995 * 90.02538 * 1 2 3
29 29 H 1.08994 * 109.46790 * 210.02225 * 1 2 3
30 30 H 1.08997 * 109.47305 * 330.02666 * 1 2 3
31 31 H 1.08001 * 120.97802 * 359.97438 * 5 4 3
32 32 H 0.96997 * 120.00131 * 359.97438 * 9 7 6
33 33 H 1.09006 * 109.47171 * 299.99774 * 10 9 7
34 34 H 1.09000 * 109.47454 * 59.99774 * 10 9 7
35 35 H 1.09000 * 112.94388 * 45.32815 * 11 10 9
36 36 H 1.08994 * 113.77031 * 336.34969 * 12 11 10
37 37 H 1.09001 * 113.77061 * 107.74347 * 12 11 10
38 38 H 0.97002 * 119.99939 * 180.02562 * 17 16 14
39 39 H 1.08990 * 113.77473 * 221.15186 * 22 13 12
40 40 H 1.09000 * 113.76555 * 89.74500 * 22 13 12
41 41 H 1.07998 * 119.41895 * 179.97438 * 23 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 7 2.2519 1.0662 0.0000
4 6 3.5603 0.7031 0.0006
5 6 4.7590 1.4163 0.0004
6 6 5.9538 0.6928 0.0017
7 6 7.2527 1.3958 0.0022
8 8 7.2862 2.6110 0.0018
9 7 8.4009 0.6899 0.0029
10 6 9.6893 1.3872 0.0039
11 6 10.8244 0.3613 0.0040
12 6 11.2218 -0.1231 1.4102
13 7 12.6193 -0.0096 0.9424
14 6 13.8022 -0.5976 1.3032
15 1 14.7145 -0.3364 0.7876
16 6 13.8287 -1.5296 2.3317
17 7 12.7170 -1.8477 2.9604
18 14 15.4422 -2.3323 2.8235
19 1 16.5370 -1.8074 1.9684
20 1 15.7344 -2.0250 4.2466
21 1 15.3378 -3.8029 2.6458
22 6 12.2278 0.9896 -0.0706
23 6 5.9058 -0.7061 0.0015
24 7 4.7588 -1.3470 0.0013
25 6 3.5997 -0.7042 0.0007
26 7 2.2870 -1.1161 0.0060
27 1 1.9741 -2.0342 0.0105
28 1 -0.3633 -0.0005 -1.0277
29 1 -0.3633 -0.8898 0.5142
30 1 -0.3634 0.8902 0.5134
31 1 4.7632 2.4963 -0.0008
32 1 8.3741 -0.2797 0.0036
33 1 9.7649 2.0121 -0.8860
34 1 9.7636 2.0120 0.8940
35 1 10.6668 -0.4468 -0.7103
36 1 10.9661 0.5777 2.2048
37 1 10.9114 -1.1453 1.6268
38 1 12.7356 -2.4986 3.6793
39 1 12.7190 0.8542 -1.0341
40 1 12.2682 2.0180 0.2882
41 1 6.8277 -1.2686 0.0021
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001031721041.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:49:28
Heat of formation + Delta-G solvation = 77.959820 kcal
Electronic energy + Delta-G solvation = -24568.620512 eV
Core-core repulsion = 20871.145270 eV
Total energy + Delta-G solvation = -3697.475242 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.144 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-43.53896 -41.11320 -39.76211 -38.98899 -35.84712 -34.83530 -34.18831 -32.68579
-32.46504 -30.65655 -29.16480 -27.50412 -26.50310 -25.19563 -24.15289 -23.60662
-22.30709 -21.77326 -20.72679 -19.57216 -19.09773 -18.69189 -17.86889 -17.28094
-17.07752 -16.94129 -16.63894 -16.26683 -15.74857 -15.52707 -14.87008 -14.78437
-14.59723 -14.44293 -14.33705 -14.17733 -13.97494 -13.30389 -13.28946 -13.06362
-12.97773 -12.87695 -12.51700 -12.34947 -12.24123 -12.17110 -11.81535 -11.57218
-11.31881 -11.13451 -10.85371 -10.41966 -10.24206 -9.94966 -9.62667 -8.88715
-7.88981 -5.21464 -0.48832 -0.32481 1.38943 1.46783 1.47476 1.56239
1.57658 1.77421 2.02653 2.48897 2.69257 2.90371 3.21422 3.32419
3.42329 3.50736 3.61391 3.70206 3.82958 3.89958 4.08682 4.22857
4.40766 4.43799 4.63576 4.73339 4.78561 4.79331 4.83195 4.86672
4.91431 4.94696 5.12317 5.14181 5.28947 5.30222 5.39625 5.58487
5.69623 5.97246 6.05865 6.47631 6.56048 6.64086 6.95117 7.13017
7.63196 8.59071 9.28065
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.025974 B = 0.002261 C = 0.002120
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1077.759345 B =12379.929232 C =13205.563793
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 C 0.313 3.687
3 N -0.519 5.519
4 C -0.023 4.023
5 C 0.033 3.967
6 C -0.198 4.198
7 C 0.571 3.429
8 O -0.575 6.575
9 N -0.705 5.705
10 C 0.141 3.859
11 C -0.115 4.115
12 C 0.164 3.836
13 N -0.646 5.646
14 C -0.232 4.232
15 H 0.083 0.917
16 C -0.070 4.070
17 N -0.953 5.953
18 Si 0.977 3.023
19 H -0.266 1.266
20 H -0.295 1.295
21 H -0.290 1.290
22 C 0.126 3.874
23 C 0.176 3.824
24 N -0.491 5.491
25 C 0.245 3.755
26 N -0.573 5.573
27 H 0.445 0.555
28 H 0.112 0.888
29 H 0.114 0.886
30 H 0.104 0.896
31 H 0.148 0.852
32 H 0.413 0.587
33 H 0.081 0.919
34 H 0.057 0.943
35 H 0.108 0.892
36 H 0.012 0.988
37 H 0.046 0.954
38 H 0.248 0.752
39 H 0.063 0.937
40 H 0.047 0.953
41 H 0.197 0.803
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -26.421 0.091 -8.978 27.905
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C 0.045 3.955
3 N -0.240 5.240
4 C -0.142 4.142
5 C 0.005 3.995
6 C -0.206 4.206
7 C 0.358 3.642
8 O -0.456 6.456
9 N -0.356 5.356
10 C 0.017 3.983
11 C -0.134 4.134
12 C 0.039 3.961
13 N -0.373 5.373
14 C -0.360 4.360
15 H 0.101 0.899
16 C -0.262 4.262
17 N -0.602 5.602
18 Si 0.806 3.194
19 H -0.190 1.190
20 H -0.223 1.223
21 H -0.217 1.217
22 C 0.000 4.000
23 C 0.007 3.993
24 N -0.203 5.203
25 C 0.007 3.993
26 N -0.189 5.189
27 H 0.289 0.711
28 H 0.131 0.869
29 H 0.133 0.867
30 H 0.123 0.877
31 H 0.166 0.834
32 H 0.251 0.749
33 H 0.099 0.901
34 H 0.075 0.925
35 H 0.126 0.874
36 H 0.030 0.970
37 H 0.065 0.935
38 H 0.057 0.943
39 H 0.081 0.919
40 H 0.065 0.935
41 H 0.214 0.786
Dipole moment (debyes) X Y Z Total
from point charges -26.493 0.715 -8.821 27.932
hybrid contribution 1.343 -1.076 0.830 1.911
sum -25.149 -0.361 -7.991 26.391
Atomic orbital electron populations
1.20751 0.79443 1.06832 1.06395 1.24757 0.97554 0.79289 0.93910
1.70493 1.00114 1.29309 1.24121 1.19737 0.93325 0.92275 1.08865
1.20871 0.88008 1.01162 0.89470 1.20529 0.93285 0.95410 1.11354
1.17954 0.83874 0.86459 0.75925 1.90766 1.87945 1.14839 1.52050
1.45799 1.05031 1.11108 1.73701 1.21275 0.80417 0.94392 1.02206
1.23419 0.93033 0.98278 0.98685 1.22302 0.83130 0.98246 0.92469
1.46425 1.04745 1.45909 1.40213 1.19468 0.86533 1.16445 1.13599
0.89917 1.25611 1.00517 1.01139 0.98981 1.69997 1.26992 1.36955
1.26275 0.85028 0.79318 0.77758 0.77342 1.18993 1.22276 1.21737
1.22702 0.91672 0.92653 0.92932 1.23141 0.95294 0.89952 0.90877
1.66493 0.96077 1.40537 1.17201 1.19350 0.87293 0.91165 1.01488
1.42787 1.02282 1.11785 1.62043 0.71112 0.86923 0.86711 0.87729
0.83380 0.74898 0.90050 0.92483 0.87356 0.97038 0.93522 0.94327
0.91886 0.93526 0.78601
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.19 10.51 71.24 0.75 0.56 16
2 C 0.31 4.33 8.08 137.90 1.11 5.45 16
3 N -0.52 -11.77 11.29 -179.88 -2.03 -13.80 16
4 C -0.02 -0.57 7.23 39.46 0.29 -0.28 16
5 C 0.03 0.85 9.75 22.92 0.22 1.08 16
6 C -0.20 -4.89 5.89 -20.01 -0.12 -5.01 16
7 C 0.57 16.09 7.77 86.74 0.67 16.77 16
8 O -0.58 -20.33 16.40 -3.93 -0.06 -20.40 16
9 N -0.71 -17.67 5.51 -466.11 -2.57 -20.23 16
10 C 0.14 4.01 5.51 86.38 0.48 4.49 16
11 C -0.11 -3.76 3.93 -10.13 -0.04 -3.80 16
12 C 0.16 7.42 7.08 86.44 0.61 8.03 16
13 N -0.65 -32.54 3.70 -716.23 -2.65 -35.19 16
14 C -0.23 -12.96 10.70 84.03 0.90 -12.06 16
15 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16
16 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16
17 N -0.95 -57.14 11.39 21.65 0.25 -56.90 16
18 Si 0.98 45.73 29.55 68.60 2.03 47.76 16
19 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16
20 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16
21 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16
22 C 0.13 4.75 8.51 86.49 0.74 5.49 16
23 C 0.18 3.75 10.69 85.18 0.91 4.66 16
24 N -0.49 -11.22 10.36 -191.77 -1.99 -13.21 16
25 C 0.24 5.45 8.45 133.91 1.13 6.58 16
26 N -0.57 -7.95 6.20 -183.79 -1.14 -9.09 16
27 H 0.45 2.89 8.96 -92.71 -0.83 2.06 16
28 H 0.11 -0.05 8.14 -2.39 -0.02 -0.07 16
29 H 0.11 -0.35 8.14 -2.39 -0.02 -0.37 16
30 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16
31 H 0.15 3.96 7.72 -2.91 -0.02 3.93 16
32 H 0.41 8.33 6.51 -92.71 -0.60 7.73 16
33 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16
34 H 0.06 1.83 7.88 -2.39 -0.02 1.81 16
35 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16
36 H 0.01 0.56 7.92 -2.39 -0.02 0.55 16
37 H 0.05 2.34 7.17 -2.39 -0.02 2.32 16
38 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16
39 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16
40 H 0.05 1.70 8.10 -2.39 -0.02 1.68 16
41 H 0.20 2.98 6.39 -2.91 -0.02 2.96 16
Total: -1.00 -80.75 350.96 -0.39 -81.14
By element:
Atomic # 1 Polarization: 11.83 SS G_CDS: -0.34 Total: 11.49 kcal
Atomic # 6 Polarization: 20.31 SS G_CDS: 8.12 Total: 28.43 kcal
Atomic # 7 Polarization: -138.29 SS G_CDS: -10.13 Total: -148.43 kcal
Atomic # 8 Polarization: -20.33 SS G_CDS: -0.06 Total: -20.40 kcal
Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal
Total: -80.75 -0.39 -81.14 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001031721041.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 159.097 kcal
(2) G-P(sol) polarization free energy of solvation -80.750 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.347 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.387 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.137 kcal
(6) G-S(sol) free energy of system = (1) + (5) 77.960 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds