Wall clock time and date at job start Tue Mar 31 2020 10:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30284 * 124.97094 * 2 1 4 4 C 1.34648 * 109.66683 * 180.02562 * 3 2 1 5 5 C 1.40826 * 107.26743 * 359.97438 * 4 3 2 6 6 N 1.32109 * 120.47075 * 180.02562 * 5 4 3 7 7 C 1.31725 * 121.94616 * 359.97438 * 6 5 4 8 8 C 1.38338 * 121.54717 * 0.02562 * 7 6 5 9 9 C 1.39632 * 119.37715 * 359.97438 * 8 7 6 10 10 C 1.47763 * 121.07506 * 179.97438 * 9 8 7 11 11 O 1.21564 * 120.00202 * 179.97438 * 10 9 8 12 12 N 1.34775 * 120.00135 * 359.97438 * 10 9 8 13 13 C 1.46501 * 120.00032 * 180.02562 * 12 10 9 14 14 C 1.53007 * 109.46905 * 179.97438 * 13 12 10 15 15 C 1.53938 * 113.73933 * 273.73882 * 14 13 12 16 16 N 1.47811 * 86.03711 * 222.08336 * 15 14 13 17 17 C 1.36937 * 134.46207 * 204.64076 * 16 15 14 18 18 H 1.07991 * 120.00397 * 179.86960 * 17 16 15 19 19 C 1.38816 * 119.99499 * 359.87113 * 17 16 15 20 20 N 1.31619 * 120.00188 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99677 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47026 * 60.00265 * 21 19 17 23 23 H 1.48501 * 109.46668 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47372 * 300.00014 * 21 19 17 25 25 C 1.47578 * 91.04807 * 24.55088 * 16 15 14 26 26 N 1.35981 * 124.97140 * 180.02562 * 2 1 3 27 27 H 0.97002 * 126.36013 * 0.02562 * 26 2 1 28 28 H 1.08998 * 109.47337 * 89.97569 * 1 2 3 29 29 H 1.08991 * 109.47135 * 209.97815 * 1 2 3 30 30 H 1.09007 * 109.46973 * 329.98010 * 1 2 3 31 31 H 1.08001 * 119.22607 * 180.02562 * 7 6 5 32 32 H 1.08000 * 120.31198 * 179.97438 * 8 7 6 33 33 H 0.97002 * 119.99759 * 359.97438 * 12 10 9 34 34 H 1.08998 * 109.46751 * 299.99466 * 13 12 10 35 35 H 1.08994 * 109.47379 * 59.99525 * 13 12 10 36 36 H 1.09006 * 112.94359 * 45.33309 * 14 13 12 37 37 H 1.09003 * 113.77367 * 336.35021 * 15 14 13 38 38 H 1.09005 * 113.77064 * 107.74842 * 15 14 13 39 39 H 0.96997 * 119.99731 * 180.02562 * 20 19 17 40 40 H 1.09004 * 113.77089 * 221.14649 * 25 16 15 41 41 H 1.09000 * 113.77086 * 89.75398 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2537 1.0676 0.0000 4 6 3.5525 0.7122 -0.0006 5 6 3.6007 -0.6952 -0.0003 6 7 4.7616 -1.3257 -0.0003 7 6 5.9076 -0.6762 -0.0009 8 6 5.9559 0.7064 -0.0012 9 6 4.7638 1.4334 -0.0013 10 6 4.7716 2.9110 -0.0010 11 8 3.7221 3.5244 -0.0015 12 7 5.9423 3.5787 -0.0001 13 6 5.9500 5.0437 0.0008 14 6 7.3953 5.5461 0.0024 15 6 8.0095 5.6619 1.4091 16 7 8.5821 6.9420 0.9418 17 6 9.6659 7.6969 1.3037 18 1 9.8757 8.6223 0.7882 19 6 10.4948 7.2723 2.3331 20 7 10.2393 6.1441 2.9610 21 14 11.9736 8.3017 2.8263 22 1 11.5175 9.6455 3.2639 23 1 12.6912 7.6343 3.9420 24 1 12.8878 8.4432 1.6647 25 6 7.5187 7.0787 -0.0723 26 7 2.2864 -1.1143 -0.0005 27 1 1.9759 -2.0333 -0.0013 28 1 -0.3634 0.0004 -1.0276 29 1 -0.3633 -0.8901 0.5135 30 1 -0.3633 0.8899 0.5142 31 1 6.8311 -1.2361 -0.0013 32 1 6.9067 1.2186 -0.0013 33 1 6.7798 3.0893 0.0007 34 1 5.4386 5.4102 -0.8893 35 1 5.4377 5.4093 0.8907 36 1 8.0290 5.0195 -0.7113 37 1 7.2713 5.7747 2.2031 38 1 8.7566 4.8985 1.6265 39 1 10.8184 5.8477 3.6805 40 1 7.8746 7.4445 -1.0355 41 1 6.6359 7.6085 0.2855 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031867444.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:33 Heat of formation + Delta-G solvation = 110.149408 kcal Electronic energy + Delta-G solvation = -24926.778377 eV Core-core repulsion = 21230.698980 eV Total energy + Delta-G solvation = -3696.079397 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.70363 -39.70285 -38.47441 -37.83757 -34.40712 -33.90619 -32.26255 -31.82351 -31.58226 -28.83169 -28.33935 -26.03975 -24.78337 -24.09491 -23.22407 -21.94002 -21.36447 -20.75836 -19.35692 -18.31247 -17.79966 -17.24463 -16.70232 -16.22388 -15.84767 -15.30540 -15.17264 -14.82185 -14.70672 -14.13572 -13.86868 -13.80349 -13.68299 -13.41931 -13.12013 -12.87029 -12.57837 -12.41406 -12.32150 -11.40551 -11.35088 -11.26274 -11.12072 -10.97270 -10.71736 -10.56826 -10.14695 -9.85981 -9.74652 -9.44720 -9.30506 -9.19488 -8.80605 -8.78091 -8.63378 -6.86822 -5.75935 -3.07919 0.16775 0.88398 2.16408 2.44725 2.93870 3.18964 3.40445 3.44520 3.45649 3.66828 3.73563 4.11068 4.35763 4.46339 4.51121 4.59483 4.79230 4.89178 5.02592 5.16078 5.27052 5.33936 5.36394 5.40186 5.50381 5.62630 5.66354 5.77740 5.86023 6.07373 6.26008 6.27397 6.37964 6.57479 6.66133 6.76925 6.77276 7.22839 7.36685 7.50165 7.54091 7.55536 7.66423 7.99042 8.35419 9.05744 9.71867 10.61152 11.41249 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.025675 B = 0.002459 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.278951 B =11385.175212 C =12067.882137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.294 3.706 3 N -0.458 5.458 4 C 0.057 3.943 5 C 0.232 3.768 6 N -0.469 5.469 7 C 0.132 3.868 8 C -0.147 4.147 9 C -0.033 4.033 10 C 0.549 3.451 11 O -0.509 6.509 12 N -0.716 5.716 13 C 0.131 3.869 14 C -0.153 4.153 15 C 0.169 3.831 16 N -0.613 5.613 17 C -0.222 4.222 18 H 0.079 0.921 19 C -0.009 4.009 20 N -0.922 5.922 21 Si 0.912 3.088 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.129 3.871 26 N -0.587 5.587 27 H 0.427 0.573 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.102 0.898 31 H 0.175 0.825 32 H 0.153 0.847 33 H 0.400 0.600 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.028 0.972 38 H 0.072 0.928 39 H 0.254 0.746 40 H 0.045 0.955 41 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.832 -18.413 -7.776 25.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.027 3.973 3 N -0.177 5.177 4 C -0.067 4.067 5 C -0.005 4.005 6 N -0.183 5.183 7 C -0.034 4.034 8 C -0.170 4.170 9 C -0.046 4.046 10 C 0.334 3.666 11 O -0.383 6.383 12 N -0.368 5.368 13 C 0.008 3.992 14 C -0.173 4.173 15 C 0.043 3.957 16 N -0.339 5.339 17 C -0.350 4.350 18 H 0.097 0.903 19 C -0.205 4.205 20 N -0.570 5.570 21 Si 0.742 3.258 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.002 3.998 26 N -0.202 5.202 27 H 0.267 0.733 28 H 0.111 0.889 29 H 0.101 0.899 30 H 0.121 0.879 31 H 0.191 0.809 32 H 0.170 0.830 33 H 0.236 0.764 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.045 0.955 38 H 0.090 0.910 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -16.624 -17.853 -7.576 25.543 hybrid contribution 1.449 -0.125 0.473 1.529 sum -15.175 -17.978 -7.102 24.575 Atomic orbital electron populations 1.20441 0.83322 1.05141 1.04638 1.23978 0.96100 0.80208 0.97007 1.70352 1.00459 1.26668 1.20260 1.19232 0.92324 0.90905 1.04231 1.18899 0.86212 0.90890 1.04546 1.66195 0.96075 1.41552 1.14469 1.22526 0.94215 0.91350 0.95287 1.22275 0.98092 0.95636 1.00967 1.19750 0.90762 0.94042 1.00002 1.17932 0.84438 0.86135 0.78100 1.90840 1.31139 1.68680 1.47670 1.45961 1.07906 1.08291 1.74636 1.21486 0.98017 0.77742 1.01983 1.23812 0.93328 0.97966 1.02225 1.22360 0.93940 0.89493 0.89884 1.45982 1.25250 1.23942 1.38766 1.18985 0.99610 1.02443 1.13975 0.90318 1.24781 0.99468 0.97848 0.98427 1.69799 1.39531 1.21915 1.25721 0.86200 0.82362 0.79326 0.77871 1.21206 1.21572 1.21095 1.22485 0.91736 0.92037 0.93541 1.42753 1.03591 1.10521 1.63347 0.73274 0.88918 0.89883 0.87917 0.80852 0.82973 0.76450 0.91734 0.91200 0.89151 0.95459 0.90950 0.93626 0.93640 0.94601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.37 10.51 36.01 0.38 0.01 16 2 C 0.29 2.90 8.08 -154.73 -1.25 1.65 16 3 N -0.46 -6.74 10.63 -8.07 -0.09 -6.83 16 4 C 0.06 0.84 6.85 -84.62 -0.58 0.26 16 5 C 0.23 2.85 8.46 -155.64 -1.32 1.53 16 6 N -0.47 -5.38 10.35 -12.30 -0.13 -5.51 16 7 C 0.13 1.24 11.14 -17.56 -0.20 1.04 16 8 C -0.15 -1.49 9.60 -39.02 -0.37 -1.86 16 9 C -0.03 -0.46 5.93 -104.45 -0.62 -1.07 16 10 C 0.55 8.83 7.79 -12.37 -0.10 8.74 16 11 O -0.51 -10.08 16.19 5.31 0.09 -9.99 16 12 N -0.72 -10.17 5.51 -61.28 -0.34 -10.51 16 13 C 0.13 2.08 5.51 -4.04 -0.02 2.06 16 14 C -0.15 -2.72 3.93 -89.70 -0.35 -3.07 16 15 C 0.17 3.84 7.08 -2.84 -0.02 3.82 16 16 N -0.61 -15.68 3.70 -177.73 -0.66 -16.34 16 17 C -0.22 -6.26 10.70 -15.06 -0.16 -6.42 16 18 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 19 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 20 N -0.92 -27.19 11.39 55.49 0.63 -26.56 16 21 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 C 0.13 2.59 8.51 -2.97 -0.03 2.56 16 26 N -0.59 -5.22 6.23 -9.43 -0.06 -5.28 16 27 H 0.43 2.19 8.96 -40.82 -0.37 1.82 16 28 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.15 1.12 6.53 -52.49 -0.34 0.77 16 33 H 0.40 4.68 6.61 -40.82 -0.27 4.41 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.07 1.21 7.87 -51.93 -0.41 0.80 16 36 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 37 H 0.03 0.66 7.92 -51.93 -0.41 0.24 16 38 H 0.07 1.79 7.16 -51.93 -0.37 1.42 16 39 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.04 0.70 8.10 -51.93 -0.42 0.28 16 LS Contribution 350.68 15.07 5.28 5.28 Total: -1.00 -38.28 350.68 -10.12 -48.40 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -5.10 Total: 1.33 kcal Atomic # 6 Polarization: 13.62 SS G_CDS: -4.73 Total: 8.89 kcal Atomic # 7 Polarization: -70.39 SS G_CDS: -0.64 Total: -71.03 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.09 Total: -9.99 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -38.28 -10.12 -48.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031867444.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.545 kcal (2) G-P(sol) polarization free energy of solvation -38.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds