Wall clock time and date at job start Tue Mar 31 2020 10:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30284 * 124.97094 * 2 1 4 4 C 1.34648 * 109.66683 * 180.02562 * 3 2 1 5 5 C 1.40826 * 107.26743 * 359.97438 * 4 3 2 6 6 N 1.32109 * 120.47075 * 180.02562 * 5 4 3 7 7 C 1.31725 * 121.94616 * 359.97438 * 6 5 4 8 8 C 1.38338 * 121.54717 * 0.02562 * 7 6 5 9 9 C 1.39632 * 119.37715 * 359.97438 * 8 7 6 10 10 C 1.47763 * 121.07506 * 179.97438 * 9 8 7 11 11 O 1.21564 * 120.00202 * 179.97438 * 10 9 8 12 12 N 1.34775 * 120.00135 * 359.97438 * 10 9 8 13 13 C 1.46501 * 120.00032 * 180.02562 * 12 10 9 14 14 C 1.53007 * 109.46905 * 179.97438 * 13 12 10 15 15 C 1.53938 * 113.73933 * 273.73882 * 14 13 12 16 16 N 1.47811 * 86.03711 * 222.08336 * 15 14 13 17 17 C 1.36937 * 134.46207 * 204.64076 * 16 15 14 18 18 H 1.07991 * 120.00397 * 179.86960 * 17 16 15 19 19 C 1.38816 * 119.99499 * 359.87113 * 17 16 15 20 20 N 1.31619 * 120.00188 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99677 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47026 * 60.00265 * 21 19 17 23 23 H 1.48501 * 109.46668 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47372 * 300.00014 * 21 19 17 25 25 C 1.47578 * 91.04807 * 24.55088 * 16 15 14 26 26 N 1.35981 * 124.97140 * 180.02562 * 2 1 3 27 27 H 0.97002 * 126.36013 * 0.02562 * 26 2 1 28 28 H 1.08998 * 109.47337 * 89.97569 * 1 2 3 29 29 H 1.08991 * 109.47135 * 209.97815 * 1 2 3 30 30 H 1.09007 * 109.46973 * 329.98010 * 1 2 3 31 31 H 1.08001 * 119.22607 * 180.02562 * 7 6 5 32 32 H 1.08000 * 120.31198 * 179.97438 * 8 7 6 33 33 H 0.97002 * 119.99759 * 359.97438 * 12 10 9 34 34 H 1.08998 * 109.46751 * 299.99466 * 13 12 10 35 35 H 1.08994 * 109.47379 * 59.99525 * 13 12 10 36 36 H 1.09006 * 112.94359 * 45.33309 * 14 13 12 37 37 H 1.09003 * 113.77367 * 336.35021 * 15 14 13 38 38 H 1.09005 * 113.77064 * 107.74842 * 15 14 13 39 39 H 0.96997 * 119.99731 * 180.02562 * 20 19 17 40 40 H 1.09004 * 113.77089 * 221.14649 * 25 16 15 41 41 H 1.09000 * 113.77086 * 89.75398 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2537 1.0676 0.0000 4 6 3.5525 0.7122 -0.0006 5 6 3.6007 -0.6952 -0.0003 6 7 4.7616 -1.3257 -0.0003 7 6 5.9076 -0.6762 -0.0009 8 6 5.9559 0.7064 -0.0012 9 6 4.7638 1.4334 -0.0013 10 6 4.7716 2.9110 -0.0010 11 8 3.7221 3.5244 -0.0015 12 7 5.9423 3.5787 -0.0001 13 6 5.9500 5.0437 0.0008 14 6 7.3953 5.5461 0.0024 15 6 8.0095 5.6619 1.4091 16 7 8.5821 6.9420 0.9418 17 6 9.6659 7.6969 1.3037 18 1 9.8757 8.6223 0.7882 19 6 10.4948 7.2723 2.3331 20 7 10.2393 6.1441 2.9610 21 14 11.9736 8.3017 2.8263 22 1 11.5175 9.6455 3.2639 23 1 12.6912 7.6343 3.9420 24 1 12.8878 8.4432 1.6647 25 6 7.5187 7.0787 -0.0723 26 7 2.2864 -1.1143 -0.0005 27 1 1.9759 -2.0333 -0.0013 28 1 -0.3634 0.0004 -1.0276 29 1 -0.3633 -0.8901 0.5135 30 1 -0.3633 0.8899 0.5142 31 1 6.8311 -1.2361 -0.0013 32 1 6.9067 1.2186 -0.0013 33 1 6.7798 3.0893 0.0007 34 1 5.4386 5.4102 -0.8893 35 1 5.4377 5.4093 0.8907 36 1 8.0290 5.0195 -0.7113 37 1 7.2713 5.7747 2.2031 38 1 8.7566 4.8985 1.6265 39 1 10.8184 5.8477 3.6805 40 1 7.8746 7.4445 -1.0355 41 1 6.6359 7.6085 0.2855 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031867444.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:32 Heat of formation + Delta-G solvation = 81.968218 kcal Electronic energy + Delta-G solvation = -24928.000405 eV Core-core repulsion = 21230.698980 eV Total energy + Delta-G solvation = -3697.301425 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.51548 -40.91166 -39.70577 -39.15923 -35.80446 -34.80279 -34.16488 -32.59083 -32.43415 -30.47064 -29.10009 -27.69900 -26.52684 -25.18978 -24.19580 -23.47184 -22.17276 -21.87420 -20.83465 -19.44787 -18.73245 -18.58452 -18.19433 -17.09846 -17.05137 -16.92959 -16.33118 -16.17678 -15.77442 -15.57759 -15.26337 -14.84712 -14.50076 -14.45296 -14.37434 -14.00743 -13.78025 -13.27880 -13.18873 -13.08523 -12.99154 -12.83151 -12.54703 -12.25774 -12.19234 -11.96072 -11.83123 -11.58881 -11.33126 -11.15095 -10.83819 -10.27624 -10.18856 -9.93135 -9.49210 -8.89948 -7.88700 -5.21815 -0.72321 0.06879 1.46265 1.46949 1.50194 1.56196 1.60208 1.88382 2.02990 2.49260 2.79142 2.98054 3.30731 3.34518 3.41501 3.57489 3.63413 3.77589 3.86187 4.04354 4.13033 4.35732 4.38214 4.53553 4.61482 4.67790 4.70572 4.79686 4.86503 4.88197 4.89247 4.97824 5.11330 5.11906 5.27599 5.38527 5.49451 5.56630 5.66755 5.96216 6.14764 6.50305 6.71438 6.77054 6.94421 7.17351 7.62694 8.58559 9.28001 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.025675 B = 0.002459 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.278951 B =11385.175212 C =12067.882137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.306 3.694 3 N -0.520 5.520 4 C 0.025 3.975 5 C 0.217 3.783 6 N -0.474 5.474 7 C 0.134 3.866 8 C -0.128 4.128 9 C -0.068 4.068 10 C 0.550 3.450 11 O -0.556 6.556 12 N -0.705 5.705 13 C 0.143 3.857 14 C -0.113 4.113 15 C 0.166 3.834 16 N -0.646 5.646 17 C -0.236 4.236 18 H 0.083 0.917 19 C -0.068 4.068 20 N -0.952 5.952 21 Si 0.978 3.022 22 H -0.281 1.281 23 H -0.294 1.294 24 H -0.274 1.274 25 C 0.125 3.875 26 N -0.571 5.571 27 H 0.445 0.555 28 H 0.111 0.889 29 H 0.118 0.882 30 H 0.096 0.904 31 H 0.217 0.783 32 H 0.181 0.819 33 H 0.414 0.586 34 H 0.076 0.924 35 H 0.052 0.948 36 H 0.110 0.890 37 H 0.009 0.991 38 H 0.049 0.951 39 H 0.249 0.751 40 H 0.064 0.936 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.626 -19.890 -8.884 26.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.039 3.961 3 N -0.241 5.241 4 C -0.098 4.098 5 C -0.021 4.021 6 N -0.187 5.187 7 C -0.032 4.032 8 C -0.151 4.151 9 C -0.081 4.081 10 C 0.337 3.663 11 O -0.434 6.434 12 N -0.357 5.357 13 C 0.019 3.981 14 C -0.133 4.133 15 C 0.040 3.960 16 N -0.372 5.372 17 C -0.365 4.365 18 H 0.100 0.900 19 C -0.261 4.261 20 N -0.601 5.601 21 Si 0.807 3.193 22 H -0.207 1.207 23 H -0.220 1.220 24 H -0.200 1.200 25 C 0.000 4.000 26 N -0.188 5.188 27 H 0.288 0.712 28 H 0.129 0.871 29 H 0.136 0.864 30 H 0.115 0.885 31 H 0.233 0.767 32 H 0.198 0.802 33 H 0.252 0.748 34 H 0.095 0.905 35 H 0.070 0.930 36 H 0.128 0.872 37 H 0.027 0.973 38 H 0.067 0.933 39 H 0.058 0.942 40 H 0.082 0.918 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -16.428 -19.367 -8.715 26.850 hybrid contribution 1.326 0.298 0.800 1.577 sum -15.102 -19.069 -7.916 25.581 Atomic orbital electron populations 1.20698 0.79877 1.06536 1.06183 1.24828 0.97653 0.79485 0.94155 1.70310 1.01242 1.29236 1.23311 1.19605 0.92707 0.92345 1.05190 1.19108 0.87457 0.90283 1.05202 1.66335 0.96324 1.41696 1.14365 1.23279 0.95037 0.91300 0.93594 1.22628 0.97830 0.96122 0.98489 1.19755 0.92286 0.92735 1.03300 1.18300 0.83895 0.87227 0.76893 1.90802 1.32716 1.69837 1.50022 1.45793 1.08305 1.07598 1.74052 1.21227 0.96362 0.78791 1.01748 1.23413 0.94224 0.96810 0.98840 1.22279 0.93139 0.88245 0.92288 1.46411 1.25985 1.24711 1.40106 1.19394 1.00520 1.02725 1.13839 0.89956 1.25622 1.02435 0.99177 0.98837 1.69983 1.40536 1.23452 1.26165 0.85156 0.79070 0.77686 0.77435 1.20720 1.22003 1.19966 1.22693 0.90511 0.93781 0.92999 1.42732 1.02391 1.11345 1.62348 0.71152 0.87090 0.86378 0.88533 0.76656 0.80197 0.74846 0.90549 0.92972 0.87225 0.97310 0.93290 0.94245 0.91805 0.93770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.60 10.51 71.24 0.75 0.15 16 2 C 0.31 5.88 8.08 137.89 1.11 6.99 16 3 N -0.52 -15.80 10.63 -179.46 -1.91 -17.71 16 4 C 0.03 0.76 6.85 40.02 0.27 1.03 16 5 C 0.22 5.18 8.46 133.92 1.13 6.32 16 6 N -0.47 -10.04 10.35 -192.83 -2.00 -12.04 16 7 C 0.13 2.17 11.14 84.73 0.94 3.11 16 8 C -0.13 -2.39 9.60 22.63 0.22 -2.17 16 9 C -0.07 -1.90 5.93 -19.75 -0.12 -2.02 16 10 C 0.55 18.01 7.79 86.76 0.68 18.68 16 11 O -0.56 -22.93 16.19 -3.92 -0.06 -22.99 16 12 N -0.70 -19.62 5.51 -466.05 -2.57 -22.19 16 13 C 0.14 4.44 5.51 86.38 0.48 4.91 16 14 C -0.11 -3.88 3.93 -10.14 -0.04 -3.92 16 15 C 0.17 7.66 7.08 86.44 0.61 8.27 16 16 N -0.65 -33.01 3.70 -716.20 -2.65 -35.66 16 17 C -0.24 -13.31 10.70 84.03 0.90 -12.41 16 18 H 0.08 4.42 7.83 -2.92 -0.02 4.40 16 19 C -0.07 -3.86 5.50 84.86 0.47 -3.40 16 20 N -0.95 -57.10 11.39 21.65 0.25 -56.86 16 21 Si 0.98 45.67 29.55 68.60 2.03 47.70 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 23 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 24 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 25 C 0.13 4.90 8.51 86.48 0.74 5.64 16 26 N -0.57 -9.53 6.23 -183.76 -1.14 -10.68 16 27 H 0.44 3.71 8.96 -92.71 -0.83 2.87 16 28 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.12 0.11 8.14 -2.39 -0.02 0.09 16 30 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.22 1.51 8.06 -2.91 -0.02 1.49 16 32 H 0.18 2.14 6.53 -2.91 -0.02 2.12 16 33 H 0.41 9.06 6.61 -92.71 -0.61 8.45 16 34 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.05 1.84 7.87 -2.39 -0.02 1.82 16 36 H 0.11 3.40 8.14 -2.38 -0.02 3.38 16 37 H 0.01 0.45 7.92 -2.39 -0.02 0.43 16 38 H 0.05 2.48 7.16 -2.38 -0.02 2.46 16 39 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 40 H 0.06 2.27 8.14 -2.38 -0.02 2.26 16 41 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 Total: -1.00 -86.74 350.68 -0.27 -87.01 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -0.35 Total: 12.21 kcal Atomic # 6 Polarization: 23.06 SS G_CDS: 8.14 Total: 31.20 kcal Atomic # 7 Polarization: -145.10 SS G_CDS: -10.02 Total: -155.12 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -0.06 Total: -22.99 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -86.74 -0.27 -87.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031867444.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.977 kcal (2) G-P(sol) polarization free energy of solvation -86.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds