Wall clock time and date at job start Tue Mar 31 2020 10:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35340 * 125.69606 * 2 1 4 4 N 1.36163 * 107.14365 * 179.90484 * 3 2 1 5 5 C 1.36222 * 133.92948 * 180.08903 * 4 3 2 6 6 C 1.35479 * 120.52112 * 180.29426 * 5 4 3 7 7 N 1.32688 * 122.11867 * 359.97438 * 6 5 4 8 8 C 1.32299 * 121.18783 * 0.03682 * 7 6 5 9 9 C 1.47799 * 120.59118 * 180.02562 * 8 7 6 10 10 O 1.21563 * 119.99923 * 179.90282 * 9 8 7 11 11 N 1.34775 * 120.00358 * 359.89803 * 9 8 7 12 12 C 1.46500 * 120.00310 * 179.97438 * 11 9 8 13 13 C 1.53004 * 109.46978 * 180.02562 * 12 11 9 14 14 C 1.53953 * 113.73680 * 273.73978 * 13 12 11 15 15 N 1.47814 * 86.03504 * 222.08949 * 14 13 12 16 16 C 1.36939 * 134.45592 * 204.65380 * 15 14 13 17 17 H 1.07997 * 119.99925 * 173.34710 * 16 15 14 18 18 C 1.38813 * 119.99891 * 353.34000 * 16 15 14 19 19 N 1.31616 * 119.99861 * 5.06744 * 18 16 15 20 20 Si 1.86794 * 119.99989 * 185.06762 * 18 16 15 21 21 H 1.48500 * 109.47197 * 94.98538 * 20 18 16 22 22 H 1.48499 * 109.47339 * 214.98799 * 20 18 16 23 23 H 1.48499 * 109.47346 * 334.98928 * 20 18 16 24 24 C 1.47580 * 91.05366 * 24.55036 * 15 14 13 25 25 C 1.37565 * 106.99224 * 0.35641 * 4 3 2 26 26 N 1.31853 * 108.11052 * 359.77691 * 25 4 3 27 27 H 1.08996 * 109.46819 * 269.71642 * 1 2 3 28 28 H 1.08995 * 109.46872 * 149.71551 * 1 2 3 29 29 H 1.08998 * 109.46592 * 29.71352 * 1 2 3 30 30 H 1.07991 * 126.42690 * 0.03468 * 3 2 1 31 31 H 1.07997 * 119.73971 * 0.31842 * 5 4 3 32 32 H 1.08002 * 118.94165 * 179.97438 * 6 5 4 33 33 H 0.97003 * 119.99609 * 0.02562 * 11 9 8 34 34 H 1.09002 * 109.47199 * 300.00560 * 12 11 9 35 35 H 1.09003 * 109.47040 * 60.00505 * 12 11 9 36 36 H 1.08991 * 112.94716 * 45.33417 * 13 12 11 37 37 H 1.08994 * 113.76976 * 336.34869 * 14 13 12 38 38 H 1.09001 * 113.76752 * 107.74996 * 14 13 12 39 39 H 0.97004 * 119.99886 * 180.02562 * 19 18 16 40 40 H 1.09000 * 113.77521 * 221.15842 * 24 15 14 41 41 H 1.08999 * 113.77042 * 89.75285 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2967 1.0991 0.0000 4 7 3.5876 0.6659 0.0022 5 6 4.7957 1.2953 0.0047 6 6 5.9451 0.5782 0.0005 7 7 5.9488 -0.7487 -0.0057 8 6 4.8189 -1.4369 -0.0088 9 6 4.8384 -2.9148 -0.0152 10 8 3.7937 -3.5364 -0.0162 11 7 6.0143 -3.5733 -0.0200 12 6 6.0336 -5.0381 -0.0257 13 6 7.4827 -5.5291 -0.0297 14 6 8.0971 -5.6354 -1.4373 15 7 8.6800 -6.9125 -0.9746 16 6 9.7695 -7.6575 -1.3396 17 1 10.0478 -8.5262 -0.7614 18 6 10.5160 -7.2962 -2.4527 19 7 10.2381 -6.1836 -3.0986 20 14 11.9149 -8.3891 -3.0339 21 1 11.4226 -9.2987 -4.0994 22 1 13.0120 -7.5450 -3.5716 23 1 12.4224 -9.1925 -1.8928 24 6 7.6183 -7.0610 0.0396 25 6 3.5502 -0.7092 -0.0047 26 7 2.2863 -1.0848 -0.0059 27 1 -0.3633 -0.0051 1.0276 28 1 -0.3633 -0.8874 -0.5182 29 1 -0.3632 0.8925 -0.5094 30 1 1.9652 2.1269 0.0005 31 1 4.8376 2.3744 0.0105 32 1 6.8888 1.1034 0.0022 33 1 6.8479 -3.0772 -0.0189 34 1 5.5262 -5.4117 0.8638 35 1 5.5230 -5.4047 -0.9162 36 1 8.1126 -4.9999 0.6853 37 1 7.3593 -5.7513 -2.2311 38 1 8.8380 -4.8654 -1.6525 39 1 10.7596 -5.9313 -3.8766 40 1 7.9775 -7.4271 1.0014 41 1 6.7394 -7.5965 -0.3194 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032111388.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:26 Heat of formation + Delta-G solvation = 130.279819 kcal Electronic energy + Delta-G solvation = -24935.249652 eV Core-core repulsion = 21240.043175 eV Total energy + Delta-G solvation = -3695.206477 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.33436 -39.72945 -38.64330 -37.85588 -34.76328 -34.33767 -32.18726 -32.08676 -30.29732 -28.80958 -28.23891 -26.17692 -24.80060 -24.58820 -23.61095 -22.03471 -21.24042 -20.72241 -19.32122 -18.67866 -18.06397 -16.76879 -16.62802 -16.50049 -15.94672 -15.57454 -15.22361 -14.79752 -14.72851 -14.47616 -13.94648 -13.77441 -13.64755 -13.39626 -13.20733 -12.94058 -12.63970 -12.57232 -12.28545 -11.60839 -11.38070 -11.28359 -10.96198 -10.71255 -10.64888 -10.53845 -10.39993 -10.03790 -9.76185 -9.70147 -9.38797 -9.11689 -8.80323 -8.75273 -8.52966 -6.82832 -5.75062 -3.05988 -0.25124 0.85203 1.94581 2.40546 2.60266 2.95672 3.41442 3.46566 3.48426 3.49517 3.58910 3.75063 3.92475 4.23343 4.48630 4.67103 4.71172 4.80275 4.89345 5.19513 5.33602 5.35638 5.36687 5.37712 5.41126 5.64554 5.69019 5.72645 5.89044 6.08384 6.19920 6.28812 6.38619 6.40199 6.58836 6.69097 6.78934 7.08347 7.26835 7.39261 7.50984 7.59941 7.69112 8.01021 8.27972 9.07710 9.73883 10.64282 11.42744 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.026015 B = 0.002450 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.035970 B =11427.791671 C =12050.842650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.058 3.942 3 C -0.084 4.084 4 N -0.355 5.355 5 C 0.031 3.969 6 C 0.032 3.968 7 N -0.424 5.424 8 C 0.184 3.816 9 C 0.567 3.433 10 O -0.502 6.502 11 N -0.698 5.698 12 C 0.130 3.870 13 C -0.154 4.154 14 C 0.171 3.829 15 N -0.614 5.614 16 C -0.223 4.223 17 H 0.080 0.920 18 C -0.008 4.008 19 N -0.919 5.919 20 Si 0.909 3.091 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.280 1.280 24 C 0.129 3.871 25 C 0.195 3.805 26 N -0.431 5.431 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.190 0.810 31 H 0.176 0.824 32 H 0.187 0.813 33 H 0.412 0.588 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.030 0.970 38 H 0.068 0.932 39 H 0.253 0.747 40 H 0.045 0.955 41 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.961 20.697 8.115 26.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.076 4.076 3 C -0.217 4.217 4 N -0.029 5.029 5 C -0.095 4.095 6 C -0.108 4.108 7 N -0.139 5.139 8 C 0.018 3.982 9 C 0.348 3.652 10 O -0.374 6.374 11 N -0.349 5.349 12 C 0.006 3.994 13 C -0.174 4.174 14 C 0.046 3.954 15 N -0.340 5.340 16 C -0.350 4.350 17 H 0.098 0.902 18 C -0.205 4.205 19 N -0.566 5.566 20 Si 0.740 3.260 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.206 1.206 24 C 0.002 3.998 25 C -0.053 4.053 26 N -0.152 5.152 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.207 0.793 31 H 0.193 0.807 32 H 0.203 0.797 33 H 0.248 0.752 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.048 0.952 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -14.834 19.105 7.915 25.449 hybrid contribution 0.788 1.242 -0.532 1.564 sum -14.046 20.347 7.383 25.803 Atomic orbital electron populations 1.20184 0.86240 1.03561 1.03087 1.21322 0.97417 0.87628 1.01192 1.22501 0.80278 1.01442 1.17514 1.42833 1.06327 1.09023 1.44745 1.22765 0.83107 1.00813 1.02790 1.22141 0.97758 0.89241 1.01696 1.68134 1.27295 1.08898 1.09579 1.22327 0.83840 0.95144 0.96848 1.17222 0.84888 0.84072 0.78993 1.90895 1.31685 1.66773 1.48088 1.45873 1.08080 1.08295 1.72695 1.21568 0.98226 0.77420 1.02184 1.23833 0.93209 0.98008 1.02324 1.22300 0.93866 0.89323 0.89895 1.45972 1.24721 1.23743 1.39536 1.19029 1.01128 1.06982 1.07883 0.90223 1.24822 0.99987 0.98012 0.97666 1.69834 1.42253 1.22942 1.21599 0.86135 0.81419 0.79731 0.78726 1.21658 1.21750 1.20565 1.22495 0.91742 0.91970 0.93591 1.22489 0.94671 0.80238 1.07853 1.70595 0.97737 1.28517 1.18329 0.90438 0.90151 0.90637 0.79341 0.80695 0.79651 0.75221 0.91475 0.90930 0.89060 0.95247 0.91333 0.93679 0.93659 0.94559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.42 36.01 0.38 -0.15 16 2 C 0.06 0.64 7.07 -82.87 -0.59 0.05 16 3 C -0.08 -0.73 11.70 -16.66 -0.19 -0.93 16 4 N -0.36 -3.70 2.95 -61.13 -0.18 -3.88 16 5 C 0.03 0.22 11.00 -16.59 -0.18 0.03 16 6 C 0.03 0.26 11.01 -18.17 -0.20 0.06 16 7 N -0.42 -5.04 9.67 -8.68 -0.08 -5.12 16 8 C 0.18 2.65 6.97 -80.53 -0.56 2.09 16 9 C 0.57 9.30 7.81 -12.35 -0.10 9.20 16 10 O -0.50 -9.77 16.23 5.31 0.09 -9.69 16 11 N -0.70 -10.56 5.55 -61.26 -0.34 -10.90 16 12 C 0.13 2.08 5.51 -4.04 -0.02 2.06 16 13 C -0.15 -2.79 3.93 -89.68 -0.35 -3.14 16 14 C 0.17 3.99 6.99 -2.83 -0.02 3.97 16 15 N -0.61 -15.87 3.70 -177.68 -0.66 -16.53 16 16 C -0.22 -6.32 10.70 -15.06 -0.16 -6.48 16 17 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 18 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 19 N -0.92 -27.48 11.51 55.49 0.64 -26.84 16 20 Si 0.91 22.32 29.56 -169.99 -5.02 17.30 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 C 0.13 2.61 8.51 -2.96 -0.03 2.59 16 25 C 0.20 2.80 7.66 -153.98 -1.18 1.62 16 26 N -0.43 -6.62 10.74 -7.53 -0.08 -6.70 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.19 0.81 8.06 -52.49 -0.42 0.39 16 31 H 0.18 0.44 8.06 -52.49 -0.42 0.01 16 32 H 0.19 0.79 8.06 -52.49 -0.42 0.37 16 33 H 0.41 5.73 7.85 -40.82 -0.32 5.41 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.07 1.26 7.88 -51.93 -0.41 0.85 16 36 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 37 H 0.03 0.72 7.92 -51.93 -0.41 0.31 16 38 H 0.07 1.74 7.37 -51.93 -0.38 1.36 16 39 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.04 0.72 8.10 -51.93 -0.42 0.30 16 LS Contribution 354.27 15.07 5.34 5.34 Total: -1.00 -37.08 354.27 -8.90 -45.98 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -5.29 Total: 0.40 kcal Atomic # 6 Polarization: 13.94 SS G_CDS: -3.30 Total: 10.64 kcal Atomic # 7 Polarization: -69.27 SS G_CDS: -0.70 Total: -69.97 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.69 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -37.08 -8.90 -45.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032111388.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.259 kcal (2) G-P(sol) polarization free energy of solvation -37.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds