Wall clock time and date at job start Tue Mar 31 2020 10:42:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50705 * 1
3 3 C 1.35340 * 125.69606 * 2 1
4 4 N 1.36163 * 107.14365 * 179.90484 * 3 2 1
5 5 C 1.36222 * 133.92948 * 180.08903 * 4 3 2
6 6 C 1.35479 * 120.52112 * 180.29426 * 5 4 3
7 7 N 1.32688 * 122.11867 * 359.97438 * 6 5 4
8 8 C 1.32299 * 121.18783 * 0.03682 * 7 6 5
9 9 C 1.47799 * 120.59118 * 180.02562 * 8 7 6
10 10 O 1.21563 * 119.99923 * 179.90282 * 9 8 7
11 11 N 1.34775 * 120.00358 * 359.89803 * 9 8 7
12 12 C 1.46500 * 120.00310 * 179.97438 * 11 9 8
13 13 C 1.53004 * 109.46978 * 180.02562 * 12 11 9
14 14 C 1.53953 * 113.73680 * 273.73978 * 13 12 11
15 15 N 1.47814 * 86.03504 * 222.08949 * 14 13 12
16 16 C 1.36939 * 134.45592 * 204.65380 * 15 14 13
17 17 H 1.07997 * 119.99925 * 173.34710 * 16 15 14
18 18 C 1.38813 * 119.99891 * 353.34000 * 16 15 14
19 19 N 1.31616 * 119.99861 * 5.06744 * 18 16 15
20 20 Si 1.86794 * 119.99989 * 185.06762 * 18 16 15
21 21 H 1.48500 * 109.47197 * 94.98538 * 20 18 16
22 22 H 1.48499 * 109.47339 * 214.98799 * 20 18 16
23 23 H 1.48499 * 109.47346 * 334.98928 * 20 18 16
24 24 C 1.47580 * 91.05366 * 24.55036 * 15 14 13
25 25 C 1.37565 * 106.99224 * 0.35641 * 4 3 2
26 26 N 1.31853 * 108.11052 * 359.77691 * 25 4 3
27 27 H 1.08996 * 109.46819 * 269.71642 * 1 2 3
28 28 H 1.08995 * 109.46872 * 149.71551 * 1 2 3
29 29 H 1.08998 * 109.46592 * 29.71352 * 1 2 3
30 30 H 1.07991 * 126.42690 * 0.03468 * 3 2 1
31 31 H 1.07997 * 119.73971 * 0.31842 * 5 4 3
32 32 H 1.08002 * 118.94165 * 179.97438 * 6 5 4
33 33 H 0.97003 * 119.99609 * 0.02562 * 11 9 8
34 34 H 1.09002 * 109.47199 * 300.00560 * 12 11 9
35 35 H 1.09003 * 109.47040 * 60.00505 * 12 11 9
36 36 H 1.08991 * 112.94716 * 45.33417 * 13 12 11
37 37 H 1.08994 * 113.76976 * 336.34869 * 14 13 12
38 38 H 1.09001 * 113.76752 * 107.74996 * 14 13 12
39 39 H 0.97004 * 119.99886 * 180.02562 * 19 18 16
40 40 H 1.09000 * 113.77521 * 221.15842 * 24 15 14
41 41 H 1.08999 * 113.77042 * 89.75285 * 24 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2967 1.0991 0.0000
4 7 3.5876 0.6659 0.0022
5 6 4.7957 1.2953 0.0047
6 6 5.9451 0.5782 0.0005
7 7 5.9488 -0.7487 -0.0057
8 6 4.8189 -1.4369 -0.0088
9 6 4.8384 -2.9148 -0.0152
10 8 3.7937 -3.5364 -0.0162
11 7 6.0143 -3.5733 -0.0200
12 6 6.0336 -5.0381 -0.0257
13 6 7.4827 -5.5291 -0.0297
14 6 8.0971 -5.6354 -1.4373
15 7 8.6800 -6.9125 -0.9746
16 6 9.7695 -7.6575 -1.3396
17 1 10.0478 -8.5262 -0.7614
18 6 10.5160 -7.2962 -2.4527
19 7 10.2381 -6.1836 -3.0986
20 14 11.9149 -8.3891 -3.0339
21 1 11.4226 -9.2987 -4.0994
22 1 13.0120 -7.5450 -3.5716
23 1 12.4224 -9.1925 -1.8928
24 6 7.6183 -7.0610 0.0396
25 6 3.5502 -0.7092 -0.0047
26 7 2.2863 -1.0848 -0.0059
27 1 -0.3633 -0.0051 1.0276
28 1 -0.3633 -0.8874 -0.5182
29 1 -0.3632 0.8925 -0.5094
30 1 1.9652 2.1269 0.0005
31 1 4.8376 2.3744 0.0105
32 1 6.8888 1.1034 0.0022
33 1 6.8479 -3.0772 -0.0189
34 1 5.5262 -5.4117 0.8638
35 1 5.5230 -5.4047 -0.9162
36 1 8.1126 -4.9999 0.6853
37 1 7.3593 -5.7513 -2.2311
38 1 8.8380 -4.8654 -1.6525
39 1 10.7596 -5.9313 -3.8766
40 1 7.9775 -7.4271 1.0014
41 1 6.7394 -7.5965 -0.3194
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001032111388.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:42:25
Heat of formation + Delta-G solvation = 103.363039 kcal
Electronic energy + Delta-G solvation = -24936.416851 eV
Core-core repulsion = 21240.043175 eV
Total energy + Delta-G solvation = -3696.373676 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.144 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-44.10125 -40.93439 -39.75129 -39.30672 -35.82029 -35.52729 -34.15892 -32.83745
-31.26192 -30.32773 -29.01650 -27.75584 -26.54349 -25.70091 -24.41539 -23.71161
-22.20868 -21.69485 -20.84795 -19.50415 -19.16942 -18.70135 -17.60233 -17.44852
-17.00028 -16.95258 -16.36141 -16.29634 -15.90319 -15.59569 -15.29181 -14.93949
-14.67713 -14.43502 -14.33896 -14.03987 -13.98276 -13.44262 -13.29101 -13.12678
-13.09173 -12.87892 -12.53756 -12.43617 -12.21858 -11.84227 -11.62659 -11.54224
-11.33485 -11.21604 -10.90785 -10.85740 -10.14855 -9.83629 -9.25076 -8.89904
-7.91018 -5.23397 -1.06740 0.10291 1.21872 1.45630 1.48114 1.52311
1.56790 1.73984 1.93919 2.48242 2.53118 2.78120 2.92908 3.19565
3.29495 3.41284 3.65372 3.76369 3.97667 4.08022 4.09539 4.18641
4.25098 4.36669 4.59593 4.70868 4.78488 4.82911 4.85909 4.87075
4.88649 5.04068 5.05794 5.10400 5.26869 5.34842 5.50821 5.55078
5.65134 5.74154 5.94278 6.25276 6.53231 6.75885 6.92736 7.07805
7.61373 8.58147 9.26810
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.026015 B = 0.002450 C = 0.002323
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1076.035970 B =11427.791671 C =12050.842650
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 C 0.031 3.969
3 C -0.064 4.064
4 N -0.358 5.358
5 C 0.065 3.935
6 C 0.010 3.990
7 N -0.422 5.422
8 C 0.134 3.866
9 C 0.567 3.433
10 O -0.546 6.546
11 N -0.693 5.693
12 C 0.141 3.859
13 C -0.115 4.115
14 C 0.169 3.831
15 N -0.646 5.646
16 C -0.235 4.235
17 H 0.085 0.915
18 C -0.069 4.069
19 N -0.953 5.953
20 Si 0.978 3.022
21 H -0.290 1.290
22 H -0.293 1.293
23 H -0.265 1.265
24 C 0.128 3.872
25 C 0.166 3.834
26 N -0.492 5.492
27 H 0.086 0.914
28 H 0.061 0.939
29 H 0.108 0.892
30 H 0.242 0.758
31 H 0.235 0.765
32 H 0.227 0.773
33 H 0.417 0.583
34 H 0.082 0.918
35 H 0.057 0.943
36 H 0.106 0.894
37 H 0.011 0.989
38 H 0.041 0.959
39 H 0.248 0.752
40 H 0.065 0.935
41 H 0.048 0.952
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.933 23.708 9.254 29.508
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C -0.102 4.102
3 C -0.196 4.196
4 N -0.032 5.032
5 C -0.060 4.060
6 C -0.131 4.131
7 N -0.137 5.137
8 C -0.030 4.030
9 C 0.351 3.649
10 O -0.422 6.422
11 N -0.345 5.345
12 C 0.017 3.983
13 C -0.135 4.135
14 C 0.044 3.956
15 N -0.372 5.372
16 C -0.363 4.363
17 H 0.103 0.897
18 C -0.262 4.262
19 N -0.601 5.601
20 Si 0.806 3.194
21 H -0.217 1.217
22 H -0.220 1.220
23 H -0.190 1.190
24 C 0.002 3.998
25 C -0.081 4.081
26 N -0.213 5.213
27 H 0.105 0.895
28 H 0.080 0.920
29 H 0.127 0.873
30 H 0.258 0.742
31 H 0.252 0.748
32 H 0.244 0.756
33 H 0.255 0.745
34 H 0.100 0.900
35 H 0.076 0.924
36 H 0.124 0.876
37 H 0.029 0.971
38 H 0.059 0.941
39 H 0.057 0.943
40 H 0.083 0.917
41 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges -14.826 22.096 9.088 28.118
hybrid contribution 0.732 0.505 -0.857 1.235
sum -14.094 22.601 8.231 27.878
Atomic orbital electron populations
1.20293 0.84261 1.04318 1.03873 1.22043 0.99007 0.87617 1.01487
1.23284 0.79002 1.02808 1.14487 1.43173 1.07989 1.07870 1.44142
1.23763 0.81380 1.03254 0.97647 1.22930 1.00121 0.87914 1.02140
1.68034 1.26615 1.11138 1.07932 1.21692 0.85031 0.93881 1.02368
1.17571 0.84180 0.85444 0.77676 1.90847 1.32950 1.68141 1.50243
1.45752 1.08331 1.07766 1.72632 1.21328 0.96480 0.78302 1.02202
1.23434 0.94205 0.97071 0.98803 1.22195 0.93005 0.88080 0.92343
1.46392 1.25511 1.24546 1.40781 1.19450 1.01954 1.07030 1.07909
0.89711 1.25685 1.02970 0.99437 0.98145 1.70022 1.43586 1.24590
1.21947 0.85060 0.78203 0.77818 0.78286 1.21748 1.21979 1.18955
1.22693 0.90564 0.93460 0.93040 1.22414 0.94279 0.82200 1.09217
1.70508 0.99121 1.31285 1.20432 0.89532 0.91956 0.87297 0.74210
0.74824 0.75645 0.74525 0.89981 0.92447 0.87582 0.97074 0.94094
0.94278 0.91676 0.93476
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.93 10.42 71.24 0.74 -0.19 16
2 C 0.03 0.65 7.07 41.63 0.29 0.95 16
3 C -0.06 -0.89 11.70 83.35 0.98 0.08 16
4 N -0.36 -6.48 2.95 -347.30 -1.02 -7.51 16
5 C 0.06 0.62 11.00 83.37 0.92 1.54 16
6 C 0.01 0.14 11.01 83.93 0.92 1.06 16
7 N -0.42 -9.73 9.67 -181.37 -1.75 -11.49 16
8 C 0.13 3.97 6.97 43.69 0.30 4.27 16
9 C 0.57 19.74 7.81 86.77 0.68 20.42 16
10 O -0.55 -22.82 16.23 -3.91 -0.06 -22.89 16
11 N -0.69 -21.77 5.55 -466.00 -2.59 -24.35 16
12 C 0.14 4.62 5.51 86.38 0.48 5.09 16
13 C -0.12 -4.19 3.93 -10.13 -0.04 -4.23 16
14 C 0.17 8.17 6.99 86.44 0.60 8.77 16
15 N -0.65 -33.86 3.70 -716.06 -2.65 -36.51 16
16 C -0.24 -13.47 10.70 84.03 0.90 -12.57 16
17 H 0.09 4.62 7.83 -2.91 -0.02 4.60 16
18 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16
19 N -0.95 -58.62 11.51 21.65 0.25 -58.37 16
20 Si 0.98 46.48 29.56 68.60 2.03 48.51 16
21 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16
22 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16
23 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16
24 C 0.13 5.12 8.51 86.49 0.74 5.85 16
25 C 0.17 4.82 7.66 135.58 1.04 5.86 16
26 N -0.49 -15.71 10.74 -177.72 -1.91 -17.61 16
27 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16
28 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16
29 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16
30 H 0.24 0.59 8.06 -2.92 -0.02 0.56 16
31 H 0.24 -0.59 8.06 -2.91 -0.02 -0.62 16
32 H 0.23 0.90 8.06 -2.91 -0.02 0.87 16
33 H 0.42 11.93 7.85 -92.71 -0.73 11.21 16
34 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16
35 H 0.06 2.08 7.88 -2.39 -0.02 2.06 16
36 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16
37 H 0.01 0.58 7.92 -2.39 -0.02 0.57 16
38 H 0.04 2.18 7.37 -2.39 -0.02 2.16 16
39 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16
40 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16
41 H 0.05 1.82 8.10 -2.39 -0.02 1.80 16
Total: -1.00 -87.58 354.27 1.65 -85.94
By element:
Atomic # 1 Polarization: 10.61 SS G_CDS: 0.34 Total: 10.94 kcal
Atomic # 6 Polarization: 24.32 SS G_CDS: 9.02 Total: 33.33 kcal
Atomic # 7 Polarization: -146.17 SS G_CDS: -9.67 Total: -155.84 kcal
Atomic # 8 Polarization: -22.82 SS G_CDS: -0.06 Total: -22.89 kcal
Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal
Total: -87.58 1.65 -85.94 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001032111388.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 189.301 kcal
(2) G-P(sol) polarization free energy of solvation -87.583 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.718 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.645 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.938 kcal
(6) G-S(sol) free energy of system = (1) + (5) 103.363 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds