Wall clock time and date at job start Tue Mar 31 2020 10:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35340 * 125.69606 * 2 1 4 4 N 1.36163 * 107.14365 * 179.90484 * 3 2 1 5 5 C 1.36222 * 133.92948 * 180.08903 * 4 3 2 6 6 C 1.35479 * 120.52112 * 180.29426 * 5 4 3 7 7 N 1.32688 * 122.11867 * 359.97438 * 6 5 4 8 8 C 1.32299 * 121.18783 * 0.03682 * 7 6 5 9 9 C 1.47799 * 120.59118 * 180.02562 * 8 7 6 10 10 O 1.21563 * 119.99923 * 179.90282 * 9 8 7 11 11 N 1.34775 * 120.00358 * 359.89803 * 9 8 7 12 12 C 1.46500 * 120.00310 * 179.97438 * 11 9 8 13 13 C 1.53004 * 109.46978 * 180.02562 * 12 11 9 14 14 C 1.53953 * 113.73680 * 273.73978 * 13 12 11 15 15 N 1.47814 * 86.03504 * 222.08949 * 14 13 12 16 16 C 1.36939 * 134.45592 * 204.65380 * 15 14 13 17 17 H 1.07997 * 119.99925 * 173.34710 * 16 15 14 18 18 C 1.38813 * 119.99891 * 353.34000 * 16 15 14 19 19 N 1.31616 * 119.99861 * 5.06744 * 18 16 15 20 20 Si 1.86794 * 119.99989 * 185.06762 * 18 16 15 21 21 H 1.48500 * 109.47197 * 94.98538 * 20 18 16 22 22 H 1.48499 * 109.47339 * 214.98799 * 20 18 16 23 23 H 1.48499 * 109.47346 * 334.98928 * 20 18 16 24 24 C 1.47580 * 91.05366 * 24.55036 * 15 14 13 25 25 C 1.37565 * 106.99224 * 0.35641 * 4 3 2 26 26 N 1.31853 * 108.11052 * 359.77691 * 25 4 3 27 27 H 1.08996 * 109.46819 * 269.71642 * 1 2 3 28 28 H 1.08995 * 109.46872 * 149.71551 * 1 2 3 29 29 H 1.08998 * 109.46592 * 29.71352 * 1 2 3 30 30 H 1.07991 * 126.42690 * 0.03468 * 3 2 1 31 31 H 1.07997 * 119.73971 * 0.31842 * 5 4 3 32 32 H 1.08002 * 118.94165 * 179.97438 * 6 5 4 33 33 H 0.97003 * 119.99609 * 0.02562 * 11 9 8 34 34 H 1.09002 * 109.47199 * 300.00560 * 12 11 9 35 35 H 1.09003 * 109.47040 * 60.00505 * 12 11 9 36 36 H 1.08991 * 112.94716 * 45.33417 * 13 12 11 37 37 H 1.08994 * 113.76976 * 336.34869 * 14 13 12 38 38 H 1.09001 * 113.76752 * 107.74996 * 14 13 12 39 39 H 0.97004 * 119.99886 * 180.02562 * 19 18 16 40 40 H 1.09000 * 113.77521 * 221.15842 * 24 15 14 41 41 H 1.08999 * 113.77042 * 89.75285 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2967 1.0991 0.0000 4 7 3.5876 0.6659 0.0022 5 6 4.7957 1.2953 0.0047 6 6 5.9451 0.5782 0.0005 7 7 5.9488 -0.7487 -0.0057 8 6 4.8189 -1.4369 -0.0088 9 6 4.8384 -2.9148 -0.0152 10 8 3.7937 -3.5364 -0.0162 11 7 6.0143 -3.5733 -0.0200 12 6 6.0336 -5.0381 -0.0257 13 6 7.4827 -5.5291 -0.0297 14 6 8.0971 -5.6354 -1.4373 15 7 8.6800 -6.9125 -0.9746 16 6 9.7695 -7.6575 -1.3396 17 1 10.0478 -8.5262 -0.7614 18 6 10.5160 -7.2962 -2.4527 19 7 10.2381 -6.1836 -3.0986 20 14 11.9149 -8.3891 -3.0339 21 1 11.4226 -9.2987 -4.0994 22 1 13.0120 -7.5450 -3.5716 23 1 12.4224 -9.1925 -1.8928 24 6 7.6183 -7.0610 0.0396 25 6 3.5502 -0.7092 -0.0047 26 7 2.2863 -1.0848 -0.0059 27 1 -0.3633 -0.0051 1.0276 28 1 -0.3633 -0.8874 -0.5182 29 1 -0.3632 0.8925 -0.5094 30 1 1.9652 2.1269 0.0005 31 1 4.8376 2.3744 0.0105 32 1 6.8888 1.1034 0.0022 33 1 6.8479 -3.0772 -0.0189 34 1 5.5262 -5.4117 0.8638 35 1 5.5230 -5.4047 -0.9162 36 1 8.1126 -4.9999 0.6853 37 1 7.3593 -5.7513 -2.2311 38 1 8.8380 -4.8654 -1.6525 39 1 10.7596 -5.9313 -3.8766 40 1 7.9775 -7.4271 1.0014 41 1 6.7394 -7.5965 -0.3194 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032111388.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:25 Heat of formation + Delta-G solvation = 103.363039 kcal Electronic energy + Delta-G solvation = -24936.416851 eV Core-core repulsion = 21240.043175 eV Total energy + Delta-G solvation = -3696.373676 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.10125 -40.93439 -39.75129 -39.30672 -35.82029 -35.52729 -34.15892 -32.83745 -31.26192 -30.32773 -29.01650 -27.75584 -26.54349 -25.70091 -24.41539 -23.71161 -22.20868 -21.69485 -20.84795 -19.50415 -19.16942 -18.70135 -17.60233 -17.44852 -17.00028 -16.95258 -16.36141 -16.29634 -15.90319 -15.59569 -15.29181 -14.93949 -14.67713 -14.43502 -14.33896 -14.03987 -13.98276 -13.44262 -13.29101 -13.12678 -13.09173 -12.87892 -12.53756 -12.43617 -12.21858 -11.84227 -11.62659 -11.54224 -11.33485 -11.21604 -10.90785 -10.85740 -10.14855 -9.83629 -9.25076 -8.89904 -7.91018 -5.23397 -1.06740 0.10291 1.21872 1.45630 1.48114 1.52311 1.56790 1.73984 1.93919 2.48242 2.53118 2.78120 2.92908 3.19565 3.29495 3.41284 3.65372 3.76369 3.97667 4.08022 4.09539 4.18641 4.25098 4.36669 4.59593 4.70868 4.78488 4.82911 4.85909 4.87075 4.88649 5.04068 5.05794 5.10400 5.26869 5.34842 5.50821 5.55078 5.65134 5.74154 5.94278 6.25276 6.53231 6.75885 6.92736 7.07805 7.61373 8.58147 9.26810 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.026015 B = 0.002450 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.035970 B =11427.791671 C =12050.842650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.031 3.969 3 C -0.064 4.064 4 N -0.358 5.358 5 C 0.065 3.935 6 C 0.010 3.990 7 N -0.422 5.422 8 C 0.134 3.866 9 C 0.567 3.433 10 O -0.546 6.546 11 N -0.693 5.693 12 C 0.141 3.859 13 C -0.115 4.115 14 C 0.169 3.831 15 N -0.646 5.646 16 C -0.235 4.235 17 H 0.085 0.915 18 C -0.069 4.069 19 N -0.953 5.953 20 Si 0.978 3.022 21 H -0.290 1.290 22 H -0.293 1.293 23 H -0.265 1.265 24 C 0.128 3.872 25 C 0.166 3.834 26 N -0.492 5.492 27 H 0.086 0.914 28 H 0.061 0.939 29 H 0.108 0.892 30 H 0.242 0.758 31 H 0.235 0.765 32 H 0.227 0.773 33 H 0.417 0.583 34 H 0.082 0.918 35 H 0.057 0.943 36 H 0.106 0.894 37 H 0.011 0.989 38 H 0.041 0.959 39 H 0.248 0.752 40 H 0.065 0.935 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.933 23.708 9.254 29.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.102 4.102 3 C -0.196 4.196 4 N -0.032 5.032 5 C -0.060 4.060 6 C -0.131 4.131 7 N -0.137 5.137 8 C -0.030 4.030 9 C 0.351 3.649 10 O -0.422 6.422 11 N -0.345 5.345 12 C 0.017 3.983 13 C -0.135 4.135 14 C 0.044 3.956 15 N -0.372 5.372 16 C -0.363 4.363 17 H 0.103 0.897 18 C -0.262 4.262 19 N -0.601 5.601 20 Si 0.806 3.194 21 H -0.217 1.217 22 H -0.220 1.220 23 H -0.190 1.190 24 C 0.002 3.998 25 C -0.081 4.081 26 N -0.213 5.213 27 H 0.105 0.895 28 H 0.080 0.920 29 H 0.127 0.873 30 H 0.258 0.742 31 H 0.252 0.748 32 H 0.244 0.756 33 H 0.255 0.745 34 H 0.100 0.900 35 H 0.076 0.924 36 H 0.124 0.876 37 H 0.029 0.971 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.083 0.917 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -14.826 22.096 9.088 28.118 hybrid contribution 0.732 0.505 -0.857 1.235 sum -14.094 22.601 8.231 27.878 Atomic orbital electron populations 1.20293 0.84261 1.04318 1.03873 1.22043 0.99007 0.87617 1.01487 1.23284 0.79002 1.02808 1.14487 1.43173 1.07989 1.07870 1.44142 1.23763 0.81380 1.03254 0.97647 1.22930 1.00121 0.87914 1.02140 1.68034 1.26615 1.11138 1.07932 1.21692 0.85031 0.93881 1.02368 1.17571 0.84180 0.85444 0.77676 1.90847 1.32950 1.68141 1.50243 1.45752 1.08331 1.07766 1.72632 1.21328 0.96480 0.78302 1.02202 1.23434 0.94205 0.97071 0.98803 1.22195 0.93005 0.88080 0.92343 1.46392 1.25511 1.24546 1.40781 1.19450 1.01954 1.07030 1.07909 0.89711 1.25685 1.02970 0.99437 0.98145 1.70022 1.43586 1.24590 1.21947 0.85060 0.78203 0.77818 0.78286 1.21748 1.21979 1.18955 1.22693 0.90564 0.93460 0.93040 1.22414 0.94279 0.82200 1.09217 1.70508 0.99121 1.31285 1.20432 0.89532 0.91956 0.87297 0.74210 0.74824 0.75645 0.74525 0.89981 0.92447 0.87582 0.97074 0.94094 0.94278 0.91676 0.93476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.93 10.42 71.24 0.74 -0.19 16 2 C 0.03 0.65 7.07 41.63 0.29 0.95 16 3 C -0.06 -0.89 11.70 83.35 0.98 0.08 16 4 N -0.36 -6.48 2.95 -347.30 -1.02 -7.51 16 5 C 0.06 0.62 11.00 83.37 0.92 1.54 16 6 C 0.01 0.14 11.01 83.93 0.92 1.06 16 7 N -0.42 -9.73 9.67 -181.37 -1.75 -11.49 16 8 C 0.13 3.97 6.97 43.69 0.30 4.27 16 9 C 0.57 19.74 7.81 86.77 0.68 20.42 16 10 O -0.55 -22.82 16.23 -3.91 -0.06 -22.89 16 11 N -0.69 -21.77 5.55 -466.00 -2.59 -24.35 16 12 C 0.14 4.62 5.51 86.38 0.48 5.09 16 13 C -0.12 -4.19 3.93 -10.13 -0.04 -4.23 16 14 C 0.17 8.17 6.99 86.44 0.60 8.77 16 15 N -0.65 -33.86 3.70 -716.06 -2.65 -36.51 16 16 C -0.24 -13.47 10.70 84.03 0.90 -12.57 16 17 H 0.09 4.62 7.83 -2.91 -0.02 4.60 16 18 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 19 N -0.95 -58.62 11.51 21.65 0.25 -58.37 16 20 Si 0.98 46.48 29.56 68.60 2.03 48.51 16 21 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 22 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 24 C 0.13 5.12 8.51 86.49 0.74 5.85 16 25 C 0.17 4.82 7.66 135.58 1.04 5.86 16 26 N -0.49 -15.71 10.74 -177.72 -1.91 -17.61 16 27 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.24 0.59 8.06 -2.92 -0.02 0.56 16 31 H 0.24 -0.59 8.06 -2.91 -0.02 -0.62 16 32 H 0.23 0.90 8.06 -2.91 -0.02 0.87 16 33 H 0.42 11.93 7.85 -92.71 -0.73 11.21 16 34 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 35 H 0.06 2.08 7.88 -2.39 -0.02 2.06 16 36 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 37 H 0.01 0.58 7.92 -2.39 -0.02 0.57 16 38 H 0.04 2.18 7.37 -2.39 -0.02 2.16 16 39 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 40 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.05 1.82 8.10 -2.39 -0.02 1.80 16 Total: -1.00 -87.58 354.27 1.65 -85.94 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 0.34 Total: 10.94 kcal Atomic # 6 Polarization: 24.32 SS G_CDS: 9.02 Total: 33.33 kcal Atomic # 7 Polarization: -146.17 SS G_CDS: -9.67 Total: -155.84 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.06 Total: -22.89 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -87.58 1.65 -85.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032111388.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.301 kcal (2) G-P(sol) polarization free energy of solvation -87.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds