Wall clock time and date at job start Tue Mar 31 2020 10:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30060 * 124.94358 * 2 1 4 4 C 1.35776 * 109.43549 * 179.97438 * 3 2 1 5 5 C 1.39490 * 133.74194 * 180.35103 * 4 3 2 6 6 C 1.39675 * 118.04984 * 180.14557 * 5 4 3 7 7 C 1.47687 * 120.38109 * 179.74304 * 6 5 4 8 8 O 1.21573 * 120.00079 * 359.72144 * 7 6 5 9 9 N 1.34777 * 119.99586 * 179.97438 * 7 6 5 10 10 C 1.46505 * 119.99724 * 179.72294 * 9 7 6 11 11 C 1.52999 * 109.47192 * 180.02562 * 10 9 7 12 12 H 1.08995 * 112.74175 * 56.23088 * 11 10 9 13 13 C 1.53488 * 113.47001 * 187.06049 * 11 10 9 14 14 C 1.53499 * 83.34822 * 140.84250 * 13 11 10 15 15 N 1.47070 * 87.98123 * 333.93065 * 14 13 11 16 16 C 1.36934 * 136.05587 * 207.14577 * 15 14 13 17 17 H 1.07995 * 120.00184 * 179.97438 * 16 15 14 18 18 C 1.38815 * 119.99903 * 359.95884 * 16 15 14 19 19 N 1.31618 * 120.00212 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99963 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47129 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47232 * 119.99692 * 20 18 16 23 23 H 1.48497 * 109.47012 * 240.00256 * 20 18 16 24 24 C 1.39985 * 119.23281 * 359.46416 * 6 5 4 25 25 N 1.31391 * 121.16012 * 0.28219 * 24 6 5 26 26 C 1.32540 * 121.79321 * 359.97438 * 25 24 6 27 27 N 1.36171 * 124.94406 * 179.97438 * 2 1 3 28 28 H 0.96994 * 126.23778 * 0.07308 * 27 2 1 29 29 H 1.08999 * 109.46893 * 90.02643 * 1 2 3 30 30 H 1.08992 * 109.46891 * 210.02782 * 1 2 3 31 31 H 1.09001 * 109.46944 * 330.02892 * 1 2 3 32 32 H 1.07995 * 120.97795 * 359.89387 * 5 4 3 33 33 H 0.97000 * 120.00483 * 359.72726 * 9 7 6 34 34 H 1.09003 * 109.46699 * 299.99993 * 10 9 7 35 35 H 1.08993 * 109.47199 * 60.00006 * 10 9 7 36 36 H 1.08995 * 114.20757 * 254.43083 * 13 11 10 37 37 H 1.09011 * 114.20920 * 27.25718 * 13 11 10 38 38 H 1.09001 * 113.46785 * 219.15332 * 14 13 11 39 39 H 1.08999 * 113.46364 * 88.70966 * 14 13 11 40 40 H 0.96993 * 119.99841 * 180.02562 * 19 18 16 41 41 H 1.08001 * 119.42073 * 180.29513 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2520 1.0661 0.0000 4 6 3.5603 0.7031 0.0006 5 6 4.7591 1.4163 0.0070 6 6 5.9538 0.6927 0.0022 7 6 7.2527 1.3956 0.0029 8 8 7.2862 2.6109 0.0026 9 7 8.4008 0.6897 -0.0013 10 6 9.6893 1.3870 -0.0067 11 6 10.8244 0.3610 -0.0113 12 1 10.7588 -0.3361 -0.8466 13 6 12.2155 0.9877 0.1559 14 6 12.4698 -0.2464 1.0326 15 7 11.0225 -0.2988 1.2881 16 6 10.2148 -0.7589 2.2936 17 1 9.1423 -0.6620 2.2119 18 6 10.7746 -1.3503 3.4178 19 7 12.0817 -1.4684 3.5175 20 14 9.6729 -1.9774 4.7899 21 1 8.2522 -1.7267 4.4376 22 1 9.8877 -3.4357 4.9699 23 1 10.0027 -1.2688 6.0525 24 6 5.9058 -0.7063 0.0026 25 7 4.7588 -1.3472 0.0019 26 6 3.5997 -0.7043 0.0013 27 7 2.2870 -1.1162 0.0005 28 1 1.9741 -2.0343 -0.0001 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 -0.8897 0.5142 31 1 -0.3633 0.8903 0.5134 32 1 4.7634 2.4962 0.0114 33 1 8.3741 -0.2799 -0.0007 34 1 9.7608 2.0113 -0.8973 35 1 9.7678 2.0122 0.8826 36 1 12.8063 1.0150 -0.7596 37 1 12.2179 1.9315 0.7014 38 1 13.0604 -0.0319 1.9233 39 1 12.8436 -1.1052 0.4750 40 1 12.4728 -1.8819 4.3029 41 1 6.8278 -1.2688 0.0037 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038324120.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:36 Heat of formation + Delta-G solvation = 108.065133 kcal Electronic energy + Delta-G solvation = -25349.921545 eV Core-core repulsion = 21653.751767 eV Total energy + Delta-G solvation = -3696.169778 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.63946 -39.82509 -38.40618 -37.75726 -34.23131 -33.85891 -32.26658 -31.88502 -31.52753 -28.88276 -28.00015 -27.24337 -24.16357 -23.48899 -23.18599 -22.01563 -21.37346 -20.50709 -19.30259 -18.63951 -18.13442 -16.88628 -16.60770 -16.18661 -16.14080 -15.31895 -15.24112 -14.61330 -14.28108 -13.93407 -13.90735 -13.76907 -13.58331 -13.35159 -13.11791 -12.97482 -12.90241 -12.31560 -11.90962 -11.55944 -11.37183 -11.29470 -11.13141 -11.00124 -10.79196 -10.57497 -10.11448 -9.86873 -9.83830 -9.40960 -9.22799 -9.10310 -8.83654 -8.73092 -8.57029 -6.92149 -5.79248 -3.11929 0.54692 0.68156 2.18395 2.41644 2.98963 3.29427 3.37103 3.43089 3.44804 3.74259 3.81129 4.07094 4.38217 4.41415 4.69295 4.70070 4.81859 4.88550 4.96238 5.14625 5.21653 5.34663 5.38580 5.54844 5.56106 5.70234 5.88870 5.89693 5.90825 6.08918 6.25019 6.32362 6.39077 6.58265 6.68927 6.77135 6.82930 7.20974 7.37707 7.39523 7.56321 7.59015 7.80551 7.95376 8.44807 9.00474 9.68119 10.60435 11.37960 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.015472 B = 0.003439 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.241107 B = 8139.002699 C = 9418.071307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.292 3.708 3 N -0.476 5.476 4 C -0.006 4.006 5 C 0.044 3.956 6 C -0.191 4.191 7 C 0.565 3.435 8 O -0.544 6.544 9 N -0.706 5.706 10 C 0.121 3.879 11 C 0.126 3.874 12 H 0.050 0.950 13 C -0.161 4.161 14 C 0.151 3.849 15 N -0.602 5.602 16 C -0.214 4.214 17 H 0.081 0.919 18 C -0.006 4.006 19 N -0.917 5.917 20 Si 0.906 3.094 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.178 3.822 25 N -0.484 5.484 26 C 0.256 3.744 27 N -0.586 5.586 28 H 0.428 0.572 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.156 0.844 33 H 0.402 0.598 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.025 0.975 40 H 0.253 0.747 41 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.226 0.660 -10.119 20.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.024 3.976 3 N -0.197 5.197 4 C -0.126 4.126 5 C 0.016 3.984 6 C -0.200 4.200 7 C 0.350 3.650 8 O -0.422 6.422 9 N -0.356 5.356 10 C -0.003 4.003 11 C 0.019 3.981 12 H 0.067 0.933 13 C -0.200 4.200 14 C 0.025 3.975 15 N -0.328 5.328 16 C -0.342 4.342 17 H 0.099 0.901 18 C -0.203 4.203 19 N -0.564 5.564 20 Si 0.737 3.263 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.217 1.217 24 C 0.009 3.991 25 N -0.196 5.196 26 C 0.020 3.980 27 N -0.201 5.201 28 H 0.268 0.732 29 H 0.110 0.890 30 H 0.102 0.898 31 H 0.119 0.881 32 H 0.174 0.826 33 H 0.238 0.762 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.043 0.957 40 H 0.063 0.937 41 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -18.587 1.351 -9.776 21.044 hybrid contribution -0.363 -1.559 0.854 1.814 sum -18.950 -0.208 -8.922 20.946 Atomic orbital electron populations 1.20429 0.83346 1.05122 1.04590 1.23725 0.95827 0.80317 0.97710 1.70450 1.00315 1.27453 1.21488 1.19550 0.92780 0.91606 1.08658 1.20830 0.87319 1.01254 0.88963 1.20769 0.94602 0.94907 1.09681 1.17754 0.83296 0.86925 0.76996 1.90761 1.87481 1.13210 1.50796 1.45873 1.05724 1.10596 1.73382 1.21877 0.81115 0.95652 1.01638 1.22435 0.92458 0.92481 0.90774 0.93312 1.23661 0.96210 1.00149 0.99952 1.22034 0.87614 0.91581 0.96229 1.45690 1.02975 1.69714 1.14420 1.18882 0.88904 1.32110 0.94270 0.90123 1.24762 0.95861 1.01310 0.98331 1.69832 1.08664 1.48745 1.29161 0.86134 0.79530 0.78299 0.82362 1.20476 1.21740 1.21685 1.22846 0.94482 0.90574 0.91234 1.66413 0.95757 1.40532 1.16916 1.19094 0.86177 0.91247 1.01529 1.42694 1.03682 1.10608 1.63093 0.73204 0.88974 0.89815 0.88104 0.82642 0.76224 0.91930 0.90774 0.92298 0.90146 0.90976 0.95695 0.93710 0.80994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.31 10.51 36.01 0.38 0.07 16 2 C 0.29 2.73 8.08 -154.74 -1.25 1.48 16 3 N -0.48 -6.26 11.29 -8.20 -0.09 -6.35 16 4 C -0.01 -0.09 7.23 -84.69 -0.61 -0.71 16 5 C 0.04 0.66 9.75 -38.58 -0.38 0.28 16 6 C -0.19 -2.89 5.89 -104.85 -0.62 -3.51 16 7 C 0.56 9.65 7.77 -12.40 -0.10 9.55 16 8 O -0.54 -10.80 16.40 5.30 0.09 -10.71 16 9 N -0.71 -11.68 5.29 -61.30 -0.32 -12.00 16 10 C 0.12 2.13 5.52 -4.04 -0.02 2.10 16 11 C 0.13 2.34 4.10 -72.39 -0.30 2.04 16 12 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 13 C -0.16 -2.84 8.03 -26.22 -0.21 -3.05 16 14 C 0.15 3.38 7.39 -8.50 -0.06 3.32 16 15 N -0.60 -14.29 3.65 -176.99 -0.65 -14.94 16 16 C -0.21 -5.63 10.55 -15.06 -0.16 -5.79 16 17 H 0.08 2.02 7.50 -52.49 -0.39 1.63 16 18 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 19 N -0.92 -26.68 11.51 55.49 0.64 -26.04 16 20 Si 0.91 21.96 29.55 -169.99 -5.02 16.93 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 C 0.18 2.49 10.69 -17.09 -0.18 2.31 16 25 N -0.48 -6.95 10.36 -11.96 -0.12 -7.07 16 26 C 0.26 3.48 8.45 -155.64 -1.31 2.16 16 27 N -0.59 -5.61 6.20 -9.44 -0.06 -5.67 16 28 H 0.43 2.62 8.96 -40.82 -0.37 2.26 16 29 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.16 2.24 7.72 -52.49 -0.41 1.84 16 33 H 0.40 6.20 6.41 -40.82 -0.26 5.93 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 1.42 8.12 -51.92 -0.42 1.00 16 38 H 0.07 1.82 7.12 -51.93 -0.37 1.45 16 39 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.17 2.10 6.39 -52.49 -0.34 1.76 16 LS Contribution 350.71 15.07 5.29 5.29 Total: -1.00 -35.03 350.71 -10.25 -45.28 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -5.07 Total: 5.28 kcal Atomic # 6 Polarization: 14.93 SS G_CDS: -4.92 Total: 10.01 kcal Atomic # 7 Polarization: -71.47 SS G_CDS: -0.61 Total: -72.08 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.09 Total: -10.71 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.03 -10.25 -45.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038324120.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.347 kcal (2) G-P(sol) polarization free energy of solvation -35.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds