Wall clock time and date at job start Tue Mar 31 2020 10:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30063 * 124.94007 * 2 1 4 4 C 1.35773 * 109.43117 * 179.97438 * 3 2 1 5 5 C 1.39487 * 133.74508 * 180.02562 * 4 3 2 6 6 C 1.39681 * 118.05417 * 179.97438 * 5 4 3 7 7 C 1.47684 * 120.38105 * 179.97438 * 6 5 4 8 8 O 1.21574 * 120.00443 * 359.73068 * 7 6 5 9 9 N 1.34784 * 119.99807 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99893 * 179.72989 * 9 7 6 11 11 C 1.53003 * 109.46708 * 180.02562 * 10 9 7 12 12 H 1.09001 * 112.96604 * 306.67092 * 11 10 9 13 13 C 1.53944 * 113.76730 * 175.00025 * 11 10 9 14 14 C 1.53946 * 86.28808 * 222.08780 * 13 11 10 15 15 N 1.47572 * 86.11761 * 23.60558 * 14 13 11 16 16 C 1.36937 * 134.49421 * 155.35662 * 15 14 13 17 17 H 1.08001 * 120.00257 * 180.02562 * 16 15 14 18 18 C 1.38815 * 119.99874 * 0.02562 * 16 15 14 19 19 N 1.31615 * 120.00089 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99898 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47644 * 59.99817 * 20 18 16 22 22 H 1.48506 * 109.46949 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47112 * 299.99331 * 20 18 16 24 24 C 1.39978 * 119.23322 * 0.25214 * 6 5 4 25 25 N 1.31397 * 121.15896 * 359.48848 * 24 6 5 26 26 C 1.32538 * 121.78864 * 0.50500 * 25 24 6 27 27 N 1.36162 * 124.94616 * 179.97438 * 2 1 3 28 28 H 0.96999 * 126.23833 * 0.05269 * 27 2 1 29 29 H 1.09000 * 109.47248 * 90.02900 * 1 2 3 30 30 H 1.09008 * 109.46991 * 210.01951 * 1 2 3 31 31 H 1.08996 * 109.47489 * 330.01968 * 1 2 3 32 32 H 1.08001 * 120.97750 * 359.97438 * 5 4 3 33 33 H 0.97005 * 119.99846 * 359.72777 * 9 7 6 34 34 H 1.08998 * 109.47134 * 299.99552 * 10 9 7 35 35 H 1.08994 * 109.47397 * 59.99843 * 10 9 7 36 36 H 1.09000 * 113.74174 * 336.43070 * 13 11 10 37 37 H 1.09001 * 113.74228 * 107.63583 * 13 11 10 38 38 H 1.09003 * 113.76813 * 137.90808 * 14 13 11 39 39 H 1.09001 * 113.76812 * 269.18915 * 14 13 11 40 40 H 0.96996 * 120.00189 * 179.97438 * 19 18 16 41 41 H 1.08001 * 119.42297 * 179.72312 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2519 1.0662 0.0000 4 6 3.5602 0.7032 0.0006 5 6 4.7590 1.4163 0.0013 6 6 5.9538 0.6927 0.0023 7 6 7.2526 1.3955 0.0025 8 8 7.2863 2.6108 -0.0032 9 7 8.4008 0.6896 0.0029 10 6 9.6893 1.3868 -0.0028 11 6 10.8243 0.3607 -0.0016 12 1 10.7397 -0.3660 0.8063 13 6 12.2254 0.9853 -0.1302 14 6 12.5392 -0.1647 -1.1043 15 7 11.0819 -0.2430 -1.3234 16 6 10.2876 -0.6944 -2.3435 17 1 9.2126 -0.6386 -2.2560 18 6 10.8642 -1.2236 -3.4899 19 7 12.1743 -1.2911 -3.5967 20 14 9.7807 -1.8401 -4.8811 21 1 8.9393 -0.7249 -5.3848 22 1 10.6340 -2.3536 -5.9827 23 1 8.9076 -2.9325 -4.3817 24 6 5.9057 -0.7063 -0.0028 25 7 4.7587 -1.3472 0.0015 26 6 3.5997 -0.7043 0.0009 27 7 2.2869 -1.1161 0.0005 28 1 1.9741 -2.0343 0.0002 29 1 -0.3634 -0.0005 -1.0277 30 1 -0.3633 -0.8899 0.5142 31 1 -0.3634 0.8901 0.5135 32 1 4.7633 2.4963 0.0011 33 1 8.3740 -0.2800 0.0071 34 1 9.7624 2.0078 -0.8956 35 1 9.7663 2.0154 0.8843 36 1 12.2259 1.9696 -0.5985 37 1 12.8066 0.9530 0.7914 38 1 13.0999 0.1468 -1.9857 39 1 12.9608 -1.0465 -0.6218 40 1 12.5772 -1.6613 -4.3976 41 1 6.8277 -1.2688 -0.0066 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038324121.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:39 Heat of formation + Delta-G solvation = 104.752768 kcal Electronic energy + Delta-G solvation = -25305.089738 eV Core-core repulsion = 21608.776325 eV Total energy + Delta-G solvation = -3696.313413 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.64891 -39.82119 -38.29386 -37.68293 -34.24225 -33.86843 -32.22776 -31.88622 -31.53532 -28.89542 -27.92786 -27.27835 -24.19676 -23.36897 -23.19919 -22.13138 -21.39937 -20.52209 -19.19755 -18.64862 -18.12650 -16.89119 -16.60311 -16.19318 -16.13884 -15.30631 -15.25647 -14.61612 -14.29350 -13.94616 -13.89369 -13.78082 -13.59084 -13.35858 -13.13539 -12.99675 -12.90257 -12.32403 -11.89073 -11.44538 -11.37092 -11.30257 -11.11156 -11.01363 -10.73385 -10.57135 -10.14773 -9.85761 -9.76441 -9.48658 -9.30366 -9.11676 -8.79916 -8.74225 -8.58894 -6.90264 -5.76947 -3.09561 0.53731 0.67102 2.17541 2.40814 2.97775 3.28326 3.38830 3.44023 3.44214 3.73220 3.80214 4.06156 4.37242 4.42823 4.68393 4.68946 4.80528 4.87402 4.96366 5.10317 5.18998 5.34081 5.39558 5.55195 5.61056 5.69603 5.87862 5.89270 5.91318 6.08077 6.24090 6.32190 6.40080 6.61451 6.68623 6.76262 6.83237 7.24304 7.38754 7.40579 7.57820 7.58997 7.79059 7.98095 8.43699 9.03618 9.70769 10.58665 11.39695 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.015611 B = 0.003384 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.142650 B = 8273.292617 C = 9521.236632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.292 3.708 3 N -0.476 5.476 4 C -0.006 4.006 5 C 0.044 3.956 6 C -0.191 4.191 7 C 0.565 3.435 8 O -0.543 6.543 9 N -0.706 5.706 10 C 0.123 3.877 11 C 0.125 3.875 12 H 0.051 0.949 13 C -0.155 4.155 14 C 0.159 3.841 15 N -0.603 5.603 16 C -0.221 4.221 17 H 0.078 0.922 18 C -0.005 4.005 19 N -0.919 5.919 20 Si 0.905 3.095 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.177 3.823 25 N -0.484 5.484 26 C 0.256 3.744 27 N -0.586 5.586 28 H 0.428 0.572 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.156 0.844 33 H 0.401 0.599 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.027 0.973 40 H 0.254 0.746 41 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.433 0.267 10.360 21.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.024 3.976 3 N -0.197 5.197 4 C -0.126 4.126 5 C 0.016 3.984 6 C -0.200 4.200 7 C 0.350 3.650 8 O -0.422 6.422 9 N -0.356 5.356 10 C -0.001 4.001 11 C 0.017 3.983 12 H 0.068 0.932 13 C -0.194 4.194 14 C 0.033 3.967 15 N -0.329 5.329 16 C -0.348 4.348 17 H 0.096 0.904 18 C -0.202 4.202 19 N -0.566 5.566 20 Si 0.735 3.265 21 H -0.211 1.211 22 H -0.215 1.215 23 H -0.212 1.212 24 C 0.008 3.992 25 N -0.196 5.196 26 C 0.019 3.981 27 N -0.201 5.201 28 H 0.268 0.732 29 H 0.111 0.889 30 H 0.102 0.898 31 H 0.119 0.881 32 H 0.174 0.826 33 H 0.237 0.763 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.044 0.956 40 H 0.064 0.936 41 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -18.758 0.976 10.020 21.289 hybrid contribution -0.400 -1.559 -0.891 1.839 sum -19.158 -0.583 9.129 21.230 Atomic orbital electron populations 1.20431 0.83344 1.05060 1.04664 1.23724 0.95831 0.80316 0.97682 1.70454 1.00314 1.27446 1.21493 1.19550 0.92784 0.91602 1.08631 1.20835 0.87320 1.01267 0.88937 1.20764 0.94592 0.94901 1.09695 1.17754 0.83282 0.86930 0.76999 1.90764 1.87468 1.13213 1.50713 1.45873 1.05757 1.10542 1.73469 1.21831 0.80971 0.95564 1.01748 1.22519 0.92667 0.92840 0.90238 0.93200 1.23773 0.95701 1.00381 0.99589 1.22195 0.86937 0.92159 0.95363 1.46067 1.02465 1.72378 1.11980 1.18882 0.89059 1.33880 0.93005 0.90415 1.24739 0.95771 1.01526 0.98156 1.69799 1.08122 1.50477 1.28230 0.86310 0.79335 0.78728 0.82081 1.21126 1.21548 1.21188 1.22840 0.94480 0.90566 0.91298 1.66416 0.95758 1.40525 1.16918 1.19094 0.86176 0.91248 1.01541 1.42694 1.03682 1.10612 1.63084 0.73200 0.88936 0.89829 0.88111 0.82634 0.76301 0.90645 0.91826 0.90461 0.92770 0.90830 0.95554 0.93623 0.81005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.31 10.51 36.00 0.38 0.07 16 2 C 0.29 2.71 8.08 -154.75 -1.25 1.46 16 3 N -0.48 -6.21 11.29 -8.21 -0.09 -6.31 16 4 C -0.01 -0.09 7.23 -84.69 -0.61 -0.70 16 5 C 0.04 0.65 9.75 -38.58 -0.38 0.27 16 6 C -0.19 -2.85 5.89 -104.85 -0.62 -3.47 16 7 C 0.56 9.56 7.77 -12.40 -0.10 9.47 16 8 O -0.54 -10.75 16.40 5.30 0.09 -10.66 16 9 N -0.71 -11.56 5.48 -61.30 -0.34 -11.89 16 10 C 0.12 2.15 5.54 -4.04 -0.02 2.13 16 11 C 0.12 2.32 4.33 -66.87 -0.29 2.03 16 12 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 13 C -0.16 -2.76 7.86 -25.81 -0.20 -2.97 16 14 C 0.16 3.57 7.51 -2.98 -0.02 3.55 16 15 N -0.60 -14.36 3.57 -170.77 -0.61 -14.97 16 16 C -0.22 -5.83 10.51 -15.06 -0.16 -5.99 16 17 H 0.08 1.96 7.80 -52.49 -0.41 1.55 16 18 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 19 N -0.92 -26.78 11.38 55.49 0.63 -26.15 16 20 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 C 0.18 2.44 10.69 -17.09 -0.18 2.26 16 25 N -0.48 -6.85 10.37 -11.96 -0.12 -6.98 16 26 C 0.26 3.44 8.45 -155.64 -1.31 2.12 16 27 N -0.59 -5.54 6.20 -9.44 -0.06 -5.60 16 28 H 0.43 2.58 8.96 -40.82 -0.37 2.21 16 29 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.08 0.13 8.14 -51.92 -0.42 -0.29 16 31 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.16 2.23 7.72 -52.49 -0.41 1.82 16 33 H 0.40 6.04 6.51 -40.82 -0.27 5.78 16 34 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.08 1.36 8.10 -51.93 -0.42 0.94 16 37 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 1.85 7.15 -51.93 -0.37 1.48 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 41 H 0.17 2.04 6.39 -52.49 -0.34 1.71 16 LS Contribution 351.27 15.07 5.29 5.29 Total: -1.00 -35.14 351.27 -10.19 -45.33 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -5.09 Total: 4.93 kcal Atomic # 6 Polarization: 14.85 SS G_CDS: -4.86 Total: 9.99 kcal Atomic # 7 Polarization: -71.30 SS G_CDS: -0.59 Total: -71.89 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.66 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.14 -10.19 -45.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038324121.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.083 kcal (2) G-P(sol) polarization free energy of solvation -35.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds