Wall clock time and date at job start Tue Mar 31 2020 10:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30063 * 124.94007 * 2 1 4 4 C 1.35773 * 109.43117 * 179.97438 * 3 2 1 5 5 C 1.39487 * 133.74508 * 180.02562 * 4 3 2 6 6 C 1.39681 * 118.05417 * 179.97438 * 5 4 3 7 7 C 1.47684 * 120.38105 * 179.97438 * 6 5 4 8 8 O 1.21574 * 120.00443 * 359.73068 * 7 6 5 9 9 N 1.34784 * 119.99807 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99893 * 179.72989 * 9 7 6 11 11 C 1.53003 * 109.46708 * 180.02562 * 10 9 7 12 12 H 1.09001 * 112.96604 * 306.67092 * 11 10 9 13 13 C 1.53944 * 113.76730 * 175.00025 * 11 10 9 14 14 C 1.53946 * 86.28808 * 222.08780 * 13 11 10 15 15 N 1.47572 * 86.11761 * 23.60558 * 14 13 11 16 16 C 1.36937 * 134.49421 * 155.35662 * 15 14 13 17 17 H 1.08001 * 120.00257 * 180.02562 * 16 15 14 18 18 C 1.38815 * 119.99874 * 0.02562 * 16 15 14 19 19 N 1.31615 * 120.00089 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99898 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47644 * 59.99817 * 20 18 16 22 22 H 1.48506 * 109.46949 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47112 * 299.99331 * 20 18 16 24 24 C 1.39978 * 119.23322 * 0.25214 * 6 5 4 25 25 N 1.31397 * 121.15896 * 359.48848 * 24 6 5 26 26 C 1.32538 * 121.78864 * 0.50500 * 25 24 6 27 27 N 1.36162 * 124.94616 * 179.97438 * 2 1 3 28 28 H 0.96999 * 126.23833 * 0.05269 * 27 2 1 29 29 H 1.09000 * 109.47248 * 90.02900 * 1 2 3 30 30 H 1.09008 * 109.46991 * 210.01951 * 1 2 3 31 31 H 1.08996 * 109.47489 * 330.01968 * 1 2 3 32 32 H 1.08001 * 120.97750 * 359.97438 * 5 4 3 33 33 H 0.97005 * 119.99846 * 359.72777 * 9 7 6 34 34 H 1.08998 * 109.47134 * 299.99552 * 10 9 7 35 35 H 1.08994 * 109.47397 * 59.99843 * 10 9 7 36 36 H 1.09000 * 113.74174 * 336.43070 * 13 11 10 37 37 H 1.09001 * 113.74228 * 107.63583 * 13 11 10 38 38 H 1.09003 * 113.76813 * 137.90808 * 14 13 11 39 39 H 1.09001 * 113.76812 * 269.18915 * 14 13 11 40 40 H 0.96996 * 120.00189 * 179.97438 * 19 18 16 41 41 H 1.08001 * 119.42297 * 179.72312 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2519 1.0662 0.0000 4 6 3.5602 0.7032 0.0006 5 6 4.7590 1.4163 0.0013 6 6 5.9538 0.6927 0.0023 7 6 7.2526 1.3955 0.0025 8 8 7.2863 2.6108 -0.0032 9 7 8.4008 0.6896 0.0029 10 6 9.6893 1.3868 -0.0028 11 6 10.8243 0.3607 -0.0016 12 1 10.7397 -0.3660 0.8063 13 6 12.2254 0.9853 -0.1302 14 6 12.5392 -0.1647 -1.1043 15 7 11.0819 -0.2430 -1.3234 16 6 10.2876 -0.6944 -2.3435 17 1 9.2126 -0.6386 -2.2560 18 6 10.8642 -1.2236 -3.4899 19 7 12.1743 -1.2911 -3.5967 20 14 9.7807 -1.8401 -4.8811 21 1 8.9393 -0.7249 -5.3848 22 1 10.6340 -2.3536 -5.9827 23 1 8.9076 -2.9325 -4.3817 24 6 5.9057 -0.7063 -0.0028 25 7 4.7587 -1.3472 0.0015 26 6 3.5997 -0.7043 0.0009 27 7 2.2869 -1.1161 0.0005 28 1 1.9741 -2.0343 0.0002 29 1 -0.3634 -0.0005 -1.0277 30 1 -0.3633 -0.8899 0.5142 31 1 -0.3634 0.8901 0.5135 32 1 4.7633 2.4963 0.0011 33 1 8.3740 -0.2800 0.0071 34 1 9.7624 2.0078 -0.8956 35 1 9.7663 2.0154 0.8843 36 1 12.2259 1.9696 -0.5985 37 1 12.8066 0.9530 0.7914 38 1 13.0999 0.1468 -1.9857 39 1 12.9608 -1.0465 -0.6218 40 1 12.5772 -1.6613 -4.3976 41 1 6.8277 -1.2688 -0.0066 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038324121.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:38 Heat of formation + Delta-G solvation = 79.866679 kcal Electronic energy + Delta-G solvation = -25306.168879 eV Core-core repulsion = 21608.776325 eV Total energy + Delta-G solvation = -3697.392555 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.56722 -41.10704 -39.72145 -38.99668 -35.65439 -34.86352 -34.18837 -32.69881 -32.49133 -30.05378 -29.71397 -28.49398 -25.37250 -25.25431 -24.19520 -23.56263 -22.31004 -21.75156 -20.84259 -19.60976 -19.40537 -18.38885 -17.88328 -17.28069 -17.14099 -17.00335 -16.56444 -16.19152 -15.74128 -15.54833 -14.90817 -14.80918 -14.69432 -14.44860 -14.37782 -14.23867 -13.58805 -13.31557 -13.26190 -12.99498 -12.90664 -12.65852 -12.58874 -12.37028 -12.30418 -12.26131 -11.83748 -11.52709 -11.43574 -11.05959 -10.79527 -10.45106 -10.25075 -9.95289 -9.65557 -8.84820 -7.84246 -5.15044 -0.51550 -0.36614 1.35639 1.44414 1.46362 1.51363 1.53463 1.75067 2.04407 2.48874 2.66165 2.87365 3.17797 3.35447 3.41832 3.47602 3.60371 3.70761 3.86883 4.02594 4.10116 4.23068 4.40737 4.41634 4.67231 4.71621 4.74493 4.75943 4.79101 4.83949 4.92857 5.10321 5.11117 5.14707 5.26603 5.37657 5.41282 5.65371 5.79780 6.01939 6.03186 6.45956 6.53130 6.60749 6.98760 7.11398 7.69010 8.63647 9.32653 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.015611 B = 0.003384 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.142650 B = 8273.292617 C = 9521.236632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.314 3.686 3 N -0.517 5.517 4 C -0.020 4.020 5 C 0.033 3.967 6 C -0.198 4.198 7 C 0.568 3.432 8 O -0.577 6.577 9 N -0.702 5.702 10 C 0.131 3.869 11 C 0.133 3.867 12 H 0.076 0.924 13 C -0.131 4.131 14 C 0.149 3.851 15 N -0.630 5.630 16 C -0.210 4.210 17 H 0.086 0.914 18 C -0.069 4.069 19 N -0.954 5.954 20 Si 0.960 3.040 21 H -0.287 1.287 22 H -0.298 1.298 23 H -0.275 1.275 24 C 0.174 3.826 25 N -0.490 5.490 26 C 0.244 3.756 27 N -0.572 5.572 28 H 0.445 0.555 29 H 0.111 0.889 30 H 0.116 0.884 31 H 0.106 0.894 32 H 0.150 0.850 33 H 0.409 0.591 34 H 0.046 0.954 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.037 0.963 39 H 0.023 0.977 40 H 0.245 0.755 41 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.040 -0.562 11.832 24.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.046 3.954 3 N -0.239 5.239 4 C -0.140 4.140 5 C 0.005 3.995 6 C -0.206 4.206 7 C 0.355 3.645 8 O -0.458 6.458 9 N -0.352 5.352 10 C 0.007 3.993 11 C 0.027 3.973 12 H 0.094 0.906 13 C -0.169 4.169 14 C 0.024 3.976 15 N -0.356 5.356 16 C -0.339 4.339 17 H 0.104 0.896 18 C -0.262 4.262 19 N -0.604 5.604 20 Si 0.790 3.210 21 H -0.213 1.213 22 H -0.224 1.224 23 H -0.201 1.201 24 C 0.005 3.995 25 N -0.202 5.202 26 C 0.006 3.994 27 N -0.189 5.189 28 H 0.289 0.711 29 H 0.129 0.871 30 H 0.134 0.866 31 H 0.125 0.875 32 H 0.167 0.833 33 H 0.246 0.754 34 H 0.064 0.936 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.113 0.887 38 H 0.056 0.944 39 H 0.041 0.959 40 H 0.054 0.946 41 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -21.404 0.114 11.533 24.313 hybrid contribution 0.244 -1.277 -1.269 1.817 sum -21.160 -1.163 10.264 23.547 Atomic orbital electron populations 1.20760 0.79281 1.06965 1.06355 1.24797 0.97589 0.79227 0.93763 1.70491 0.99929 1.29287 1.24170 1.19714 0.93346 0.92207 1.08697 1.20850 0.87911 1.01147 0.89561 1.20546 0.93486 0.95339 1.11202 1.17986 0.83933 0.86519 0.76048 1.90741 1.87968 1.14685 1.52374 1.45806 1.05347 1.10885 1.73155 1.21650 0.81153 0.95116 1.01420 1.22703 0.93503 0.92911 0.88219 0.90647 1.23568 0.95217 0.98358 0.99793 1.22172 0.86134 0.93999 0.95334 1.46421 1.03161 1.72361 1.13690 1.19266 0.89846 1.31335 0.93467 0.89601 1.25441 0.96777 1.03339 1.00602 1.69978 1.09496 1.52545 1.28378 0.85415 0.77775 0.78255 0.79533 1.21345 1.22433 1.20063 1.23022 0.95153 0.90076 0.91201 1.66477 0.96061 1.40511 1.17163 1.19355 0.87291 0.91216 1.01501 1.42771 1.02138 1.11816 1.62136 0.71101 0.87092 0.86550 0.87535 0.83274 0.75434 0.93602 0.89531 0.90396 0.88685 0.94443 0.95885 0.94641 0.79454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.31 10.51 71.24 0.75 0.44 16 2 C 0.31 5.01 8.08 137.89 1.11 6.12 16 3 N -0.52 -12.92 11.29 -179.88 -2.03 -14.95 16 4 C -0.02 -0.57 7.23 39.46 0.29 -0.29 16 5 C 0.03 0.99 9.75 22.92 0.22 1.21 16 6 C -0.20 -5.88 5.89 -20.01 -0.12 -5.99 16 7 C 0.57 19.14 7.77 86.74 0.67 19.82 16 8 O -0.58 -23.06 16.40 -3.95 -0.06 -23.12 16 9 N -0.70 -22.21 5.48 -466.12 -2.55 -24.76 16 10 C 0.13 4.40 5.54 86.38 0.48 4.87 16 11 C 0.13 4.64 4.33 45.09 0.20 4.83 16 12 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 13 C -0.13 -4.37 7.86 31.25 0.25 -4.12 16 14 C 0.15 6.71 7.51 86.48 0.65 7.36 16 15 N -0.63 -29.74 3.57 -694.20 -2.48 -32.22 16 16 C -0.21 -11.10 10.51 84.03 0.88 -10.22 16 17 H 0.09 4.27 7.80 -2.91 -0.02 4.25 16 18 C -0.07 -3.87 5.50 84.86 0.47 -3.41 16 19 N -0.95 -57.18 11.38 21.65 0.25 -56.94 16 20 Si 0.96 45.94 29.55 68.60 2.03 47.97 16 21 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 22 H -0.30 -14.50 7.11 99.48 0.71 -13.80 16 23 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 24 C 0.17 4.65 10.69 85.18 0.91 5.56 16 25 N -0.49 -13.25 10.37 -191.76 -1.99 -15.24 16 26 C 0.24 6.23 8.45 133.91 1.13 7.36 16 27 N -0.57 -9.37 6.20 -183.79 -1.14 -10.51 16 28 H 0.45 3.94 8.96 -92.71 -0.83 3.11 16 29 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.12 -0.21 8.14 -2.38 -0.02 -0.23 16 31 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.15 4.50 7.72 -2.91 -0.02 4.47 16 33 H 0.41 11.68 6.51 -92.70 -0.60 11.08 16 34 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.08 2.61 8.10 -2.39 -0.02 2.59 16 37 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.04 1.94 7.15 -2.39 -0.02 1.93 16 39 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.24 14.47 8.31 -92.71 -0.77 13.70 16 41 H 0.19 4.20 6.39 -2.91 -0.02 4.18 16 Total: -1.00 -78.48 351.27 -0.44 -78.91 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -0.34 Total: 17.31 kcal Atomic # 6 Polarization: 25.67 SS G_CDS: 7.89 Total: 33.56 kcal Atomic # 7 Polarization: -144.68 SS G_CDS: -9.95 Total: -154.63 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.06 Total: -23.12 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -78.48 -0.44 -78.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038324121.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.781 kcal (2) G-P(sol) polarization free energy of solvation -78.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds