Wall clock time and date at job start Tue Mar 31 2020 10:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30721 * 126.27633 * 2 1 4 4 N 1.28654 * 110.34059 * 179.97438 * 3 2 1 5 5 C 1.32184 * 109.56589 * 0.02562 * 4 3 2 6 6 C 1.41047 * 133.25406 * 179.97438 * 5 4 3 7 7 C 1.35642 * 119.40426 * 180.02562 * 6 5 4 8 8 C 1.41825 * 119.59351 * 359.97438 * 7 6 5 9 9 C 1.47607 * 119.97647 * 179.97438 * 8 7 6 10 10 O 1.21582 * 119.99745 * 179.97438 * 9 8 7 11 11 N 1.34776 * 119.99733 * 0.02562 * 9 8 7 12 12 C 1.46504 * 119.99550 * 179.97438 * 11 9 8 13 13 C 1.52999 * 109.47055 * 180.02562 * 12 11 9 14 14 H 1.09002 * 112.73796 * 56.23688 * 13 12 11 15 15 C 1.53492 * 113.46777 * 187.06274 * 13 12 11 16 16 C 1.53500 * 83.34757 * 140.84564 * 15 13 12 17 17 N 1.47069 * 113.46483 * 285.49623 * 13 12 11 18 18 C 1.36937 * 136.06341 * 38.06455 * 17 13 12 19 19 H 1.08007 * 119.99220 * 359.97438 * 18 17 13 20 20 C 1.38805 * 120.00643 * 180.02562 * 18 17 13 21 21 N 1.31620 * 119.99552 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00175 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47250 * 359.97438 * 22 20 18 24 24 H 1.48511 * 109.46974 * 120.00126 * 22 20 18 25 25 H 1.48497 * 109.47229 * 239.99522 * 22 20 18 26 26 C 1.36492 * 120.04134 * 0.02562 * 8 7 6 27 27 N 1.35845 * 120.38601 * 359.97438 * 26 8 7 28 28 H 1.09002 * 109.47186 * 270.02260 * 1 2 3 29 29 H 1.09005 * 109.46998 * 30.01264 * 1 2 3 30 30 H 1.08996 * 109.47514 * 150.01434 * 1 2 3 31 31 H 1.08001 * 120.30189 * 0.03891 * 6 5 4 32 32 H 1.07991 * 120.20191 * 180.26967 * 7 6 5 33 33 H 0.97000 * 120.00255 * 359.97438 * 11 9 8 34 34 H 1.09001 * 109.47180 * 299.99906 * 12 11 9 35 35 H 1.08994 * 109.47175 * 59.99888 * 12 11 9 36 36 H 1.09008 * 114.20463 * 254.43338 * 15 13 12 37 37 H 1.08998 * 114.21223 * 27.25275 * 15 13 12 38 38 H 1.08992 * 113.46726 * 219.14921 * 16 15 13 39 39 H 1.09000 * 113.46609 * 88.70842 * 16 15 13 40 40 H 0.97004 * 120.00207 * 180.02562 * 21 20 18 41 41 H 1.07997 * 119.80826 * 180.02562 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2805 1.0538 0.0000 4 7 3.5176 0.7006 0.0005 5 6 3.6013 -0.6186 0.0004 6 6 4.6877 -1.5181 0.0003 7 6 4.4470 -2.8530 -0.0004 8 6 3.1091 -3.3235 -0.0005 9 6 2.8375 -4.7744 -0.0019 10 8 1.6906 -5.1781 -0.0015 11 7 3.8608 -5.6514 -0.0025 12 6 3.5912 -7.0915 -0.0033 13 6 4.9152 -7.8582 -0.0032 14 1 5.5595 -7.5862 0.8329 15 6 4.7440 -9.3736 -0.1771 16 6 5.9961 -9.2343 -1.0541 17 7 5.6030 -7.8391 -1.3030 18 6 5.7932 -6.9250 -2.3047 19 1 5.3721 -5.9341 -2.2185 20 6 6.5261 -7.2721 -3.4313 21 7 7.0387 -8.4798 -3.5364 22 14 6.7848 -6.0253 -4.7979 23 1 6.1112 -4.7512 -4.4397 24 1 8.2389 -5.7833 -4.9785 25 1 6.2097 -6.5503 -6.0624 26 6 2.0725 -2.4355 -0.0005 27 7 2.3130 -1.0985 0.0003 28 1 -0.3634 0.0004 1.0277 29 1 -0.3633 0.8899 -0.5141 30 1 -0.3634 -0.8901 -0.5136 31 1 5.7021 -1.1474 0.0010 32 1 5.2691 -3.5532 0.0039 33 1 4.7757 -5.3293 -0.0024 34 1 3.0194 -7.3545 0.8866 35 1 3.0192 -7.3535 -0.8933 36 1 4.8995 -9.9486 0.7358 37 1 3.8458 -9.6623 -0.7230 38 1 5.9719 -9.8581 -1.9475 39 1 6.9285 -9.3299 -0.4977 40 1 7.5512 -8.7223 -4.3235 41 1 1.0551 -2.7979 -0.0001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038439160.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:51 Heat of formation + Delta-G solvation = 112.547989 kcal Electronic energy + Delta-G solvation = -25604.070224 eV Core-core repulsion = 21908.094837 eV Total energy + Delta-G solvation = -3695.975387 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.77880 -41.22023 -39.87724 -38.76956 -35.90859 -35.33636 -34.22155 -33.08956 -31.87883 -29.95393 -29.29191 -28.52150 -25.92911 -25.35886 -24.75382 -23.52125 -22.77574 -21.93765 -20.98331 -19.63193 -18.76346 -18.31312 -18.10270 -17.91368 -17.08985 -16.94960 -16.26149 -16.03511 -15.92629 -15.63386 -15.30853 -14.85257 -14.61221 -14.52735 -14.16932 -13.71893 -13.55285 -13.50959 -13.29689 -13.21610 -12.97639 -12.81558 -12.67918 -12.55426 -12.27852 -12.23837 -11.83858 -11.76566 -11.59222 -11.38887 -10.93344 -10.81535 -10.79546 -10.06289 -9.26142 -8.85916 -7.85207 -5.16175 -0.74966 -0.28382 0.95643 1.24653 1.45043 1.47241 1.54445 1.72178 2.07793 2.35522 2.48245 2.84724 3.26451 3.30783 3.38389 3.42959 3.51709 3.57049 3.62580 3.96835 4.04443 4.22673 4.29732 4.39885 4.59050 4.63982 4.68980 4.70925 4.74180 4.80001 4.86231 4.92375 4.97447 5.10602 5.13694 5.14547 5.36046 5.39054 5.61056 5.62997 5.78633 6.00043 6.43115 6.95991 7.05227 7.27415 7.67714 8.66968 9.32761 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.015145 B = 0.003615 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.347819 B = 7743.610889 C = 8908.339351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.157 3.843 3 N -0.287 5.287 4 N -0.327 5.327 5 C 0.190 3.810 6 C -0.085 4.085 7 C -0.057 4.057 8 C -0.155 4.155 9 C 0.570 3.430 10 O -0.571 6.571 11 N -0.699 5.699 12 C 0.129 3.871 13 C 0.134 3.866 14 H 0.074 0.926 15 C -0.135 4.135 16 C 0.140 3.860 17 N -0.629 5.629 18 C -0.201 4.201 19 H 0.093 0.907 20 C -0.069 4.069 21 N -0.953 5.953 22 Si 0.961 3.039 23 H -0.263 1.263 24 H -0.296 1.296 25 H -0.303 1.303 26 C 0.146 3.854 27 N -0.400 5.400 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.100 0.900 31 H 0.185 0.815 32 H 0.172 0.828 33 H 0.410 0.590 34 H 0.088 0.912 35 H 0.048 0.952 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.033 0.967 39 H 0.022 0.978 40 H 0.243 0.757 41 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.600 9.194 11.698 18.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.106 4.106 3 N -0.125 5.125 4 N -0.171 5.171 5 C -0.060 4.060 6 C -0.105 4.105 7 C -0.081 4.081 8 C -0.162 4.162 9 C 0.356 3.644 10 O -0.452 6.452 11 N -0.349 5.349 12 C 0.005 3.995 13 C 0.027 3.973 14 H 0.091 0.909 15 C -0.174 4.174 16 C 0.015 3.985 17 N -0.355 5.355 18 C -0.330 4.330 19 H 0.110 0.890 20 C -0.262 4.262 21 N -0.603 5.603 22 Si 0.791 3.209 23 H -0.187 1.187 24 H -0.223 1.223 25 H -0.231 1.231 26 C 0.021 3.979 27 N -0.081 5.081 28 H 0.127 0.873 29 H 0.128 0.872 30 H 0.119 0.881 31 H 0.202 0.798 32 H 0.190 0.810 33 H 0.247 0.753 34 H 0.106 0.894 35 H 0.067 0.933 36 H 0.117 0.883 37 H 0.098 0.902 38 H 0.052 0.948 39 H 0.040 0.960 40 H 0.053 0.947 41 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -10.931 10.717 11.397 19.084 hybrid contribution 0.872 -0.692 -1.268 1.687 sum -10.059 10.024 10.129 17.443 Atomic orbital electron populations 1.20563 0.79404 1.06469 1.06077 1.25922 0.98691 0.79808 1.06161 1.74104 0.96840 1.24892 1.16683 1.74814 1.11586 1.07313 1.23349 1.22869 0.86103 0.92616 1.04401 1.20458 0.97871 0.90321 1.01899 1.21475 0.95923 0.95844 0.94878 1.19480 0.94093 0.93380 1.09228 1.17752 0.84923 0.85247 0.76442 1.90771 1.21784 1.80309 1.52375 1.45804 1.09552 1.06963 1.72552 1.21719 0.97914 0.78274 1.01602 1.22583 0.91436 0.94370 0.88866 0.90918 1.23485 0.98522 0.95059 1.00298 1.22053 0.94220 0.86465 0.95800 1.46006 1.61385 1.11934 1.16181 1.19254 1.25751 0.93472 0.94509 0.88969 1.25454 1.01630 0.98323 1.00773 1.70006 1.41085 1.19953 1.29296 0.85262 0.76945 0.79129 0.79586 1.18723 1.22340 1.23073 1.21934 1.02790 0.78703 0.94512 1.43824 1.08958 1.07207 1.48087 0.87306 0.87170 0.88105 0.79759 0.81037 0.75273 0.89422 0.93319 0.88285 0.90197 0.94835 0.95990 0.94737 0.77941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.72 10.40 71.24 0.74 0.02 16 2 C 0.16 3.45 8.14 137.68 1.12 4.57 16 3 N -0.29 -8.30 12.18 -49.62 -0.60 -8.91 16 4 N -0.33 -10.10 12.29 -55.23 -0.68 -10.77 16 5 C 0.19 4.95 7.92 134.12 1.06 6.01 16 6 C -0.08 -1.72 10.09 22.36 0.23 -1.49 16 7 C -0.06 -1.08 9.53 22.56 0.22 -0.87 16 8 C -0.15 -3.40 5.84 -20.33 -0.12 -3.51 16 9 C 0.57 15.19 7.76 86.72 0.67 15.86 16 10 O -0.57 -18.19 16.27 -3.98 -0.06 -18.25 16 11 N -0.70 -18.56 5.28 -466.20 -2.46 -21.02 16 12 C 0.13 3.76 5.52 86.38 0.48 4.23 16 13 C 0.13 4.23 4.10 41.79 0.17 4.40 16 14 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 15 C -0.13 -4.13 8.03 30.93 0.25 -3.88 16 16 C 0.14 5.97 7.39 83.19 0.62 6.58 16 17 N -0.63 -27.69 3.65 -713.83 -2.61 -30.29 16 18 C -0.20 -9.93 10.55 84.03 0.89 -9.04 16 19 H 0.09 4.19 7.50 -2.91 -0.02 4.17 16 20 C -0.07 -3.69 5.50 84.86 0.47 -3.23 16 21 N -0.95 -55.29 11.51 21.65 0.25 -55.04 16 22 Si 0.96 43.82 29.55 68.60 2.03 45.85 16 23 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 24 H -0.30 -13.65 7.11 99.48 0.71 -12.95 16 25 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 26 C 0.15 2.95 10.45 83.66 0.87 3.83 16 27 N -0.40 -9.13 2.94 -341.74 -1.00 -10.13 16 28 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.11 1.00 8.14 -2.38 -0.02 0.99 16 30 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.19 2.83 8.06 -2.91 -0.02 2.81 16 32 H 0.17 2.62 6.44 -2.92 -0.02 2.60 16 33 H 0.41 9.94 6.40 -92.71 -0.59 9.34 16 34 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.10 2.31 8.14 -2.38 -0.02 2.29 16 37 H 0.08 2.48 8.12 -2.39 -0.02 2.46 16 38 H 0.03 1.67 7.12 -2.39 -0.02 1.65 16 39 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.24 13.96 8.31 -92.70 -0.77 13.19 16 41 H 0.20 3.24 7.56 -2.91 -0.02 3.22 16 Total: -1.00 -73.94 350.88 2.99 -70.95 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.48 Total: 14.14 kcal Atomic # 6 Polarization: 15.82 SS G_CDS: 7.66 Total: 23.48 kcal Atomic # 7 Polarization: -129.06 SS G_CDS: -7.11 Total: -136.17 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: -0.06 Total: -18.25 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -73.94 2.99 -70.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038439160.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.494 kcal (2) G-P(sol) polarization free energy of solvation -73.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds