Wall clock time and date at job start Tue Mar 31 2020 10:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46504 * 110.88596 * 2 1 4 4 C 1.34772 * 120.00092 * 62.42915 * 3 2 1 5 5 O 1.21591 * 120.00011 * 0.02562 * 4 3 2 6 6 C 1.47535 * 120.00069 * 180.02562 * 4 3 2 7 7 C 1.39408 * 120.75294 * 0.02562 * 6 4 3 8 8 N 1.31917 * 121.01547 * 179.97438 * 7 6 4 9 9 C 1.31797 * 122.60059 * 359.97438 * 8 7 6 10 10 C 1.39441 * 120.63233 * 0.02562 * 9 8 7 11 11 N 1.35701 * 134.43488 * 180.02562 * 10 9 8 12 12 C 1.30132 * 109.50307 * 179.97438 * 11 10 9 13 13 N 1.36254 * 110.05782 * 0.24401 * 12 11 10 14 14 H 0.96998 * 126.30005 * 179.73441 * 13 12 11 15 15 C 1.36929 * 107.40581 * 359.60438 * 13 12 11 16 16 C 1.55157 * 111.03637 * 236.09544 * 2 1 3 17 17 C 1.54320 * 102.94529 * 206.40552 * 16 2 1 18 18 N 1.47019 * 107.27115 * 22.19354 * 17 16 2 19 19 C 1.36938 * 125.65029 * 181.02233 * 18 17 16 20 20 H 1.08005 * 119.99831 * 180.02562 * 19 18 17 21 21 C 1.38808 * 120.00070 * 0.04136 * 19 18 17 22 22 N 1.31623 * 120.00110 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00103 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46910 * 60.00372 * 23 21 19 25 25 H 1.48503 * 109.47302 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47296 * 300.00212 * 23 21 19 27 27 C 1.47423 * 108.70255 * 1.06167 * 18 17 16 28 28 H 1.08996 * 109.47765 * 60.70184 * 1 2 3 29 29 H 1.09005 * 109.46977 * 180.70292 * 1 2 3 30 30 H 1.09008 * 109.47021 * 300.69676 * 1 2 3 31 31 H 0.97004 * 119.99460 * 242.42961 * 3 2 1 32 32 H 1.07999 * 119.49617 * 359.95690 * 7 6 4 33 33 H 1.07997 * 119.68401 * 180.02562 * 9 8 7 34 34 H 1.08002 * 124.96788 * 179.97438 * 12 11 10 35 35 H 1.09001 * 110.72138 * 324.77318 * 16 2 1 36 36 H 1.09006 * 110.72026 * 88.04124 * 16 2 1 37 37 H 1.09002 * 109.88313 * 262.77891 * 17 16 2 38 38 H 1.09003 * 110.01038 * 141.68225 * 17 16 2 39 39 H 0.96999 * 120.00160 * 180.02562 * 22 21 19 40 40 H 1.08997 * 110.36927 * 217.03388 * 27 18 17 41 41 H 1.08998 * 110.46402 * 94.75313 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0522 1.3688 0.0000 4 6 1.7878 2.1910 1.0346 5 8 1.1161 1.7966 1.9683 6 6 2.3133 3.5695 1.0343 7 6 3.0846 4.0382 -0.0282 8 7 3.5566 5.2700 -0.0340 9 6 3.3324 6.1210 0.9471 10 6 2.5718 5.7452 2.0537 11 7 2.1746 6.3711 3.1904 12 6 1.4619 5.5540 3.9100 13 7 1.3597 4.3479 3.2842 14 1 0.8852 3.5686 3.6135 15 6 2.0474 4.4393 2.1037 16 6 2.0869 -0.8078 -1.2019 17 6 3.4683 -1.2732 -0.6953 18 7 3.4276 -1.2420 0.7740 19 6 4.4644 -1.5649 1.6082 20 1 4.3333 -1.5100 2.6788 21 6 5.6839 -1.9626 1.0778 22 7 5.8440 -2.0287 -0.2270 23 14 7.0985 -2.4024 2.2157 24 1 6.6989 -3.5371 3.0863 25 1 8.2815 -2.7924 1.4071 26 1 7.4395 -1.2282 3.0583 27 6 2.0853 -0.8063 1.2005 28 1 -0.3634 0.5029 -0.8961 29 1 -0.3633 -1.0276 0.0126 30 1 -0.3633 0.5247 0.8837 31 1 2.5884 1.6832 -0.7447 32 1 3.2992 3.3827 -0.8592 33 1 3.7417 7.1190 0.8934 34 1 1.0201 5.7951 4.8655 35 1 1.4480 -1.6634 -1.4208 36 1 2.1928 -0.1699 -2.0795 37 1 4.2432 -0.5984 -1.0591 38 1 3.6692 -2.2879 -1.0391 39 1 6.6961 -2.3070 -0.5977 40 1 2.1554 -0.1715 2.0838 41 1 1.4513 -1.6692 1.4038 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046335392.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:06 Heat of formation + Delta-G solvation = 79.164543 kcal Electronic energy + Delta-G solvation = -26582.162995 eV Core-core repulsion = 22884.739993 eV Total energy + Delta-G solvation = -3697.423002 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.57388 -40.00741 -38.53053 -37.30142 -34.07400 -33.43402 -32.25527 -31.14676 -30.29663 -29.59980 -28.71378 -25.73649 -24.98009 -23.69102 -23.23458 -22.45797 -20.97749 -20.20858 -19.27073 -18.60630 -17.81183 -17.36790 -16.76445 -15.77273 -15.74050 -15.31129 -14.98426 -14.68375 -14.62534 -14.38068 -13.92797 -13.76870 -13.32943 -13.09935 -12.92514 -12.64953 -12.13040 -11.99700 -11.87112 -11.71979 -11.04988 -10.92856 -10.89426 -10.66334 -10.53596 -10.42188 -10.20383 -10.10779 -9.97939 -9.68565 -9.33885 -9.25296 -8.78670 -8.61236 -8.49505 -6.82751 -5.72686 -3.04824 0.26169 1.23061 2.33169 2.69200 3.07313 3.28700 3.39968 3.44402 3.45265 3.80982 3.88969 4.20957 4.36417 4.49199 4.69844 4.83751 4.92124 5.04966 5.11775 5.31480 5.43314 5.46629 5.56395 5.67335 5.80428 5.92285 6.00385 6.06102 6.08493 6.24268 6.27072 6.33814 6.45665 6.59446 6.74825 7.00886 7.05288 7.41742 7.51436 7.53077 7.71281 7.78084 7.79168 8.24183 8.35574 9.21534 9.81470 10.47011 11.39213 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013245 B = 0.004369 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.504841 B = 6407.267841 C = 7166.112467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.155 3.845 3 N -0.690 5.690 4 C 0.571 3.429 5 O -0.549 6.549 6 C -0.171 4.171 7 C 0.141 3.859 8 N -0.488 5.488 9 C 0.195 3.805 10 C -0.020 4.020 11 N -0.480 5.480 12 C 0.262 3.738 13 N -0.577 5.577 14 H 0.438 0.562 15 C 0.130 3.870 16 C -0.147 4.147 17 C 0.176 3.824 18 N -0.602 5.602 19 C -0.224 4.224 20 H 0.074 0.926 21 C -0.007 4.007 22 N -0.923 5.923 23 Si 0.910 3.090 24 H -0.285 1.285 25 H -0.289 1.289 26 H -0.286 1.286 27 C 0.132 3.868 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.398 0.602 32 H 0.167 0.833 33 H 0.169 0.831 34 H 0.223 0.777 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.046 0.954 38 H 0.045 0.955 39 H 0.252 0.748 40 H 0.054 0.946 41 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.290 13.278 1.005 17.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.069 3.931 3 N -0.339 5.339 4 C 0.358 3.642 5 O -0.429 6.429 6 C -0.179 4.179 7 C -0.011 4.011 8 N -0.198 5.198 9 C 0.029 3.971 10 C -0.141 4.141 11 N -0.200 5.200 12 C -0.026 4.026 13 N -0.188 5.188 14 H 0.280 0.720 15 C 0.008 3.992 16 C -0.185 4.185 17 C 0.052 3.948 18 N -0.329 5.329 19 C -0.353 4.353 20 H 0.092 0.908 21 C -0.203 4.203 22 N -0.571 5.571 23 Si 0.740 3.260 24 H -0.212 1.212 25 H -0.215 1.215 26 H -0.213 1.213 27 C 0.006 3.994 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.234 0.766 32 H 0.184 0.816 33 H 0.186 0.814 34 H 0.239 0.761 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -10.802 13.947 1.063 17.673 hybrid contribution 0.206 -1.674 0.996 1.959 sum -10.596 12.273 2.059 16.344 Atomic orbital electron populations 1.21983 0.94228 1.02274 1.02206 1.21552 0.92577 0.80332 0.98639 1.45688 1.53445 1.12800 1.21960 1.17739 0.79922 0.84009 0.82550 1.90649 1.40496 1.76595 1.35193 1.20069 1.06714 0.95147 0.96011 1.22803 0.90554 0.92134 0.95655 1.67699 1.21910 1.03500 1.26651 1.22308 0.90422 0.98992 0.85383 1.20180 1.05020 0.91431 0.97453 1.70467 1.14918 1.30948 1.03663 1.25622 0.97275 0.80396 0.99301 1.43210 1.43858 1.15505 1.16201 0.71991 1.18683 0.95946 0.96137 0.88405 1.23241 1.00556 0.98930 0.95792 1.21169 0.89937 1.00051 0.83682 1.44422 1.07708 1.78947 1.01798 1.18981 0.89414 1.37989 0.88891 0.90775 1.24749 0.97685 1.01877 0.96006 1.69925 1.24245 1.53783 1.09157 0.86227 0.81933 0.78256 0.79533 1.21199 1.21527 1.21312 1.21869 0.87657 0.94829 0.95087 0.93037 0.91681 0.91178 0.76628 0.81633 0.81354 0.76081 0.90715 0.91623 0.93576 0.93720 0.93748 0.92782 0.95705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 8.62 37.15 0.32 -1.81 16 2 C 0.16 2.62 0.82 -129.67 -0.11 2.51 16 3 N -0.69 -10.80 5.13 -46.65 -0.24 -11.04 16 4 C 0.57 9.26 7.16 -12.47 -0.09 9.17 16 5 O -0.55 -9.74 12.29 5.29 0.06 -9.67 16 6 C -0.17 -2.50 5.89 -104.86 -0.62 -3.11 16 7 C 0.14 1.87 10.71 -17.08 -0.18 1.69 16 8 N -0.49 -6.51 10.30 -12.65 -0.13 -6.64 16 9 C 0.19 2.41 11.25 -17.12 -0.19 2.22 16 10 C -0.02 -0.27 7.27 -84.73 -0.62 -0.89 16 11 N -0.48 -5.93 11.28 -12.01 -0.14 -6.06 16 12 C 0.26 2.46 12.97 -89.56 -1.16 1.30 16 13 N -0.58 -6.56 6.02 -11.51 -0.07 -6.63 16 14 H 0.44 4.60 7.92 -40.82 -0.32 4.28 16 15 C 0.13 1.83 6.93 -83.81 -0.58 1.25 16 16 C -0.15 -2.49 5.99 -24.90 -0.15 -2.63 16 17 C 0.18 4.06 5.37 -3.07 -0.02 4.04 16 18 N -0.60 -15.17 3.39 -170.08 -0.58 -15.75 16 19 C -0.22 -6.30 10.28 -15.06 -0.15 -6.46 16 20 H 0.07 2.06 7.83 -52.48 -0.41 1.65 16 21 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 22 N -0.92 -26.70 10.31 55.49 0.57 -26.13 16 23 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 C 0.13 2.82 6.11 -2.53 -0.02 2.80 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 30 H 0.07 1.08 6.45 -51.92 -0.34 0.75 16 31 H 0.40 5.47 6.56 -40.82 -0.27 5.21 16 32 H 0.17 1.84 6.42 -52.49 -0.34 1.51 16 33 H 0.17 1.58 8.06 -52.49 -0.42 1.16 16 34 H 0.22 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.07 1.18 8.04 -51.93 -0.42 0.76 16 36 H 0.07 0.95 8.05 -51.93 -0.42 0.53 16 37 H 0.05 1.16 7.38 -51.93 -0.38 0.78 16 38 H 0.04 1.15 7.50 -51.93 -0.39 0.76 16 39 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.05 1.24 6.31 -51.93 -0.33 0.91 16 41 H 0.03 0.53 8.03 -51.93 -0.42 0.12 16 LS Contribution 335.63 15.07 5.06 5.06 Total: -1.00 -34.25 335.63 -8.99 -43.24 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -4.85 Total: 6.49 kcal Atomic # 6 Polarization: 13.44 SS G_CDS: -3.66 Total: 9.78 kcal Atomic # 7 Polarization: -71.67 SS G_CDS: -0.58 Total: -72.25 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.06 Total: -9.67 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.25 -8.99 -43.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046335392.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.409 kcal (2) G-P(sol) polarization free energy of solvation -34.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds