Wall clock time and date at job start Tue Mar 31 2020 10:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46504 * 110.88596 * 2 1 4 4 C 1.34772 * 120.00092 * 62.42915 * 3 2 1 5 5 O 1.21591 * 120.00011 * 0.02562 * 4 3 2 6 6 C 1.47535 * 120.00069 * 180.02562 * 4 3 2 7 7 C 1.39408 * 120.75294 * 0.02562 * 6 4 3 8 8 N 1.31917 * 121.01547 * 179.97438 * 7 6 4 9 9 C 1.31797 * 122.60059 * 359.97438 * 8 7 6 10 10 C 1.39441 * 120.63233 * 0.02562 * 9 8 7 11 11 N 1.35701 * 134.43488 * 180.02562 * 10 9 8 12 12 C 1.30132 * 109.50307 * 179.97438 * 11 10 9 13 13 N 1.36254 * 110.05782 * 0.24401 * 12 11 10 14 14 H 0.96998 * 126.30005 * 179.73441 * 13 12 11 15 15 C 1.36929 * 107.40581 * 359.60438 * 13 12 11 16 16 C 1.55157 * 111.03637 * 236.09544 * 2 1 3 17 17 C 1.54320 * 102.94529 * 206.40552 * 16 2 1 18 18 N 1.47019 * 107.27115 * 22.19354 * 17 16 2 19 19 C 1.36938 * 125.65029 * 181.02233 * 18 17 16 20 20 H 1.08005 * 119.99831 * 180.02562 * 19 18 17 21 21 C 1.38808 * 120.00070 * 0.04136 * 19 18 17 22 22 N 1.31623 * 120.00110 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00103 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46910 * 60.00372 * 23 21 19 25 25 H 1.48503 * 109.47302 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47296 * 300.00212 * 23 21 19 27 27 C 1.47423 * 108.70255 * 1.06167 * 18 17 16 28 28 H 1.08996 * 109.47765 * 60.70184 * 1 2 3 29 29 H 1.09005 * 109.46977 * 180.70292 * 1 2 3 30 30 H 1.09008 * 109.47021 * 300.69676 * 1 2 3 31 31 H 0.97004 * 119.99460 * 242.42961 * 3 2 1 32 32 H 1.07999 * 119.49617 * 359.95690 * 7 6 4 33 33 H 1.07997 * 119.68401 * 180.02562 * 9 8 7 34 34 H 1.08002 * 124.96788 * 179.97438 * 12 11 10 35 35 H 1.09001 * 110.72138 * 324.77318 * 16 2 1 36 36 H 1.09006 * 110.72026 * 88.04124 * 16 2 1 37 37 H 1.09002 * 109.88313 * 262.77891 * 17 16 2 38 38 H 1.09003 * 110.01038 * 141.68225 * 17 16 2 39 39 H 0.96999 * 120.00160 * 180.02562 * 22 21 19 40 40 H 1.08997 * 110.36927 * 217.03388 * 27 18 17 41 41 H 1.08998 * 110.46402 * 94.75313 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0522 1.3688 0.0000 4 6 1.7878 2.1910 1.0346 5 8 1.1161 1.7966 1.9683 6 6 2.3133 3.5695 1.0343 7 6 3.0846 4.0382 -0.0282 8 7 3.5566 5.2700 -0.0340 9 6 3.3324 6.1210 0.9471 10 6 2.5718 5.7452 2.0537 11 7 2.1746 6.3711 3.1904 12 6 1.4619 5.5540 3.9100 13 7 1.3597 4.3479 3.2842 14 1 0.8852 3.5686 3.6135 15 6 2.0474 4.4393 2.1037 16 6 2.0869 -0.8078 -1.2019 17 6 3.4683 -1.2732 -0.6953 18 7 3.4276 -1.2420 0.7740 19 6 4.4644 -1.5649 1.6082 20 1 4.3333 -1.5100 2.6788 21 6 5.6839 -1.9626 1.0778 22 7 5.8440 -2.0287 -0.2270 23 14 7.0985 -2.4024 2.2157 24 1 6.6989 -3.5371 3.0863 25 1 8.2815 -2.7924 1.4071 26 1 7.4395 -1.2282 3.0583 27 6 2.0853 -0.8063 1.2005 28 1 -0.3634 0.5029 -0.8961 29 1 -0.3633 -1.0276 0.0126 30 1 -0.3633 0.5247 0.8837 31 1 2.5884 1.6832 -0.7447 32 1 3.2992 3.3827 -0.8592 33 1 3.7417 7.1190 0.8934 34 1 1.0201 5.7951 4.8655 35 1 1.4480 -1.6634 -1.4208 36 1 2.1928 -0.1699 -2.0795 37 1 4.2432 -0.5984 -1.0591 38 1 3.6692 -2.2879 -1.0391 39 1 6.6961 -2.3070 -0.5977 40 1 2.1554 -0.1715 2.0838 41 1 1.4513 -1.6692 1.4038 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046335392.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:05 Heat of formation + Delta-G solvation = 54.938999 kcal Electronic energy + Delta-G solvation = -26583.213493 eV Core-core repulsion = 22884.739993 eV Total energy + Delta-G solvation = -3698.473500 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.49280 -41.29982 -39.58009 -38.76841 -35.74168 -34.44136 -33.77094 -32.44148 -31.59409 -30.80703 -30.26949 -27.52971 -26.08342 -25.30870 -24.22062 -23.46645 -22.35681 -21.76189 -20.60442 -19.63586 -19.05779 -18.62532 -18.27585 -17.15802 -16.76917 -16.70948 -16.33039 -15.96515 -15.89656 -15.65579 -15.53259 -14.95301 -14.78391 -14.23990 -14.07716 -13.89169 -13.66846 -13.50926 -13.41043 -13.10625 -12.85340 -12.76966 -12.20036 -12.07962 -12.03427 -11.98200 -11.72912 -11.64779 -11.46398 -11.25960 -10.71797 -10.52823 -10.26301 -10.05214 -9.50270 -8.87281 -7.87317 -5.20632 -0.71993 0.23041 1.40508 1.41501 1.43368 1.49939 1.83716 1.96008 2.10399 2.46151 2.77160 3.05217 3.21677 3.31034 3.44618 3.56273 3.69372 3.78910 3.87218 4.03848 4.11552 4.17537 4.20099 4.53835 4.63948 4.68110 4.76047 4.85046 4.87412 4.93250 5.02741 5.07180 5.08982 5.31741 5.34296 5.40688 5.59903 5.67314 5.77151 6.19204 6.21889 6.48667 6.54918 6.81038 7.10267 7.13247 7.76661 8.40304 9.22095 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013245 B = 0.004369 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.504841 B = 6407.267841 C = 7166.112467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.167 3.833 3 N -0.689 5.689 4 C 0.569 3.431 5 O -0.569 6.569 6 C -0.189 4.189 7 C 0.140 3.860 8 N -0.500 5.500 9 C 0.195 3.805 10 C -0.032 4.032 11 N -0.505 5.505 12 C 0.282 3.718 13 N -0.578 5.578 14 H 0.441 0.559 15 C 0.108 3.892 16 C -0.129 4.129 17 C 0.183 3.817 18 N -0.621 5.621 19 C -0.243 4.243 20 H 0.067 0.933 21 C -0.056 4.056 22 N -0.943 5.943 23 Si 0.970 3.030 24 H -0.279 1.279 25 H -0.289 1.289 26 H -0.284 1.284 27 C 0.129 3.871 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.407 0.593 32 H 0.182 0.818 33 H 0.196 0.804 34 H 0.274 0.726 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.018 0.982 38 H 0.009 0.991 39 H 0.248 0.752 40 H 0.033 0.967 41 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.385 14.455 1.172 19.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.080 3.920 3 N -0.339 5.339 4 C 0.357 3.643 5 O -0.451 6.451 6 C -0.198 4.198 7 C -0.012 4.012 8 N -0.210 5.210 9 C 0.030 3.970 10 C -0.153 4.153 11 N -0.225 5.225 12 C -0.005 4.005 13 N -0.189 5.189 14 H 0.283 0.717 15 C -0.015 4.015 16 C -0.167 4.167 17 C 0.059 3.941 18 N -0.347 5.347 19 C -0.372 4.372 20 H 0.085 0.915 21 C -0.250 4.250 22 N -0.592 5.592 23 Si 0.798 3.202 24 H -0.205 1.205 25 H -0.214 1.214 26 H -0.211 1.211 27 C 0.003 3.997 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.244 0.756 32 H 0.199 0.801 33 H 0.213 0.787 34 H 0.289 0.711 35 H 0.112 0.888 36 H 0.118 0.882 37 H 0.036 0.964 38 H 0.027 0.973 39 H 0.057 0.943 40 H 0.051 0.949 41 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -11.923 15.142 1.229 19.311 hybrid contribution 0.524 -1.995 1.055 2.317 sum -11.399 13.147 2.284 17.549 Atomic orbital electron populations 1.21908 0.91600 1.03249 1.02927 1.21416 0.94251 0.80330 0.95986 1.45659 1.53659 1.12234 1.22375 1.18002 0.79521 0.84610 0.82187 1.90626 1.41442 1.77158 1.35853 1.20008 1.08119 0.94490 0.97177 1.23063 0.89924 0.92456 0.95740 1.67771 1.22379 1.03623 1.27190 1.22777 0.89607 0.99832 0.84755 1.20437 1.05271 0.91362 0.98193 1.70495 1.16462 1.31748 1.03823 1.26697 0.95096 0.78869 0.99886 1.43353 1.43565 1.16319 1.15655 0.71668 1.18945 0.96766 0.96518 0.89241 1.23119 0.96790 1.00114 0.96676 1.20964 0.92998 0.97506 0.82669 1.44668 1.08505 1.78897 1.02631 1.19242 0.90735 1.37992 0.89225 0.91523 1.25474 0.99821 1.02271 0.97427 1.70123 1.24305 1.54383 1.10368 0.85290 0.79007 0.77998 0.77857 1.20507 1.21424 1.21066 1.21985 0.86222 0.95071 0.96417 0.90444 0.90548 0.92343 0.75567 0.80125 0.78744 0.71065 0.88809 0.88245 0.96396 0.97313 0.94290 0.94915 0.95648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 8.62 71.98 0.62 -3.00 16 2 C 0.17 5.40 0.82 4.99 0.00 5.40 16 3 N -0.69 -20.94 5.13 -419.76 -2.15 -23.09 16 4 C 0.57 18.27 7.16 86.70 0.62 18.89 16 5 O -0.57 -20.16 12.29 -4.00 -0.05 -20.21 16 6 C -0.19 -5.48 5.89 -20.02 -0.12 -5.59 16 7 C 0.14 3.66 10.71 84.96 0.91 4.57 16 8 N -0.50 -12.93 10.30 -193.92 -2.00 -14.92 16 9 C 0.20 4.62 11.25 84.99 0.96 5.58 16 10 C -0.03 -0.83 7.27 39.46 0.29 -0.54 16 11 N -0.51 -11.60 11.28 -191.90 -2.16 -13.76 16 12 C 0.28 4.62 12.97 179.98 2.34 6.96 16 13 N -0.58 -12.47 6.02 -190.32 -1.15 -13.62 16 14 H 0.44 8.90 7.92 -92.71 -0.73 8.17 16 15 C 0.11 2.96 6.93 39.50 0.27 3.24 16 16 C -0.13 -4.12 5.99 31.78 0.19 -3.93 16 17 C 0.18 8.56 5.37 86.73 0.47 9.02 16 18 N -0.62 -31.89 3.39 -692.00 -2.35 -34.24 16 19 C -0.24 -13.97 10.28 84.03 0.86 -13.11 16 20 H 0.07 3.82 7.83 -2.91 -0.02 3.79 16 21 C -0.06 -3.23 5.49 84.86 0.47 -2.76 16 22 N -0.94 -55.82 10.31 21.65 0.22 -55.60 16 23 Si 0.97 46.62 29.55 68.60 2.03 48.65 16 24 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 25 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 26 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 27 C 0.13 5.52 6.11 86.86 0.53 6.05 16 28 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.08 1.83 8.13 -2.38 -0.02 1.81 16 30 H 0.06 1.70 6.45 -2.38 -0.02 1.68 16 31 H 0.41 10.72 6.56 -92.71 -0.61 10.11 16 32 H 0.18 3.89 6.42 -2.91 -0.02 3.87 16 33 H 0.20 3.33 8.06 -2.91 -0.02 3.31 16 34 H 0.27 1.13 8.06 -2.91 -0.02 1.11 16 35 H 0.09 2.70 8.04 -2.39 -0.02 2.68 16 36 H 0.10 2.56 8.05 -2.38 -0.02 2.54 16 37 H 0.02 0.92 7.38 -2.39 -0.02 0.90 16 38 H 0.01 0.46 7.50 -2.39 -0.02 0.44 16 39 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 40 H 0.03 1.53 6.31 -2.39 -0.02 1.52 16 41 H 0.03 1.09 8.03 -2.39 -0.02 1.07 16 Total: -1.00 -76.46 335.63 0.55 -75.91 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: -0.24 Total: 20.12 kcal Atomic # 6 Polarization: 22.36 SS G_CDS: 8.40 Total: 30.77 kcal Atomic # 7 Polarization: -145.64 SS G_CDS: -9.59 Total: -155.23 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.05 Total: -20.21 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -76.46 0.55 -75.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046335392.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.844 kcal (2) G-P(sol) polarization free energy of solvation -76.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds