Wall clock time and date at job start Tue Mar 31 2020 10:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 110.64302 * 2 1 4 4 C 1.34776 * 119.99889 * 298.30814 * 3 2 1 5 5 O 1.21590 * 119.99888 * 0.02562 * 4 3 2 6 6 C 1.47533 * 119.99824 * 180.02562 * 4 3 2 7 7 C 1.39410 * 120.75862 * 359.97438 * 6 4 3 8 8 N 1.31915 * 121.01886 * 179.97438 * 7 6 4 9 9 C 1.31789 * 122.59908 * 0.06506 * 8 7 6 10 10 C 1.39445 * 120.63451 * 359.95326 * 9 8 7 11 11 N 1.35702 * 134.43296 * 179.97438 * 10 9 8 12 12 C 1.30137 * 109.50097 * 180.02562 * 11 10 9 13 13 N 1.36259 * 110.05509 * 0.02562 * 12 11 10 14 14 H 0.97002 * 126.29543 * 179.97438 * 13 12 11 15 15 C 1.36921 * 107.40713 * 359.97438 * 13 12 11 16 16 C 1.55163 * 110.87163 * 123.24685 * 2 1 3 17 17 C 1.54905 * 101.58264 * 153.93457 * 16 2 1 18 18 N 1.47433 * 104.83382 * 322.99008 * 17 16 2 19 19 C 1.36932 * 125.65064 * 204.09029 * 18 17 16 20 20 H 1.08001 * 120.00217 * 180.02562 * 19 18 17 21 21 C 1.38815 * 119.99765 * 0.04675 * 19 18 17 22 22 N 1.31614 * 120.00219 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99718 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47195 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47158 * 119.99598 * 23 21 19 26 26 H 1.48502 * 109.46790 * 239.99961 * 23 21 19 27 27 C 1.47024 * 108.69864 * 24.12742 * 18 17 16 28 28 H 1.08999 * 109.46624 * 59.30098 * 1 2 3 29 29 H 1.09002 * 109.47007 * 179.30039 * 1 2 3 30 30 H 1.08997 * 109.46627 * 299.29966 * 1 2 3 31 31 H 0.97001 * 119.99761 * 118.31305 * 3 2 1 32 32 H 1.08004 * 119.48505 * 0.04117 * 7 6 4 33 33 H 1.08005 * 119.68447 * 180.23397 * 9 8 7 34 34 H 1.07993 * 124.97115 * 179.97438 * 12 11 10 35 35 H 1.09002 * 111.00497 * 272.01230 * 16 2 1 36 36 H 1.08998 * 111.00267 * 35.86150 * 16 2 1 37 37 H 1.08998 * 110.36720 * 204.15678 * 17 16 2 38 38 H 1.08998 * 110.36979 * 81.82780 * 17 16 2 39 39 H 0.97001 * 120.00101 * 180.02562 * 22 21 19 40 40 H 1.08997 * 109.88391 * 239.51718 * 27 18 17 41 41 H 1.09008 * 110.00625 * 118.43162 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0465 1.3709 0.0000 4 6 1.7661 2.1967 -1.0276 5 8 1.0841 1.8039 -1.9544 6 6 2.2867 3.5771 -1.0279 7 6 3.0697 4.0440 0.0268 8 7 3.5383 5.2771 0.0317 9 6 3.2989 6.1314 -0.9429 10 6 2.5255 5.7578 -2.0414 11 7 2.1119 6.3871 -3.1703 12 6 1.3927 5.5707 -3.8842 13 7 1.2973 4.3636 -3.2594 14 1 0.8168 3.5857 -3.5834 15 6 2.0043 4.4506 -2.0901 16 6 2.0829 -0.7949 1.2125 17 6 3.4674 -1.2456 0.6838 18 7 3.2471 -1.5463 -0.7426 19 6 4.0077 -2.3902 -1.5071 20 1 3.7633 -2.5440 -2.5477 21 6 5.0926 -3.0483 -0.9442 22 7 5.3905 -2.8608 0.3239 23 14 6.1306 -4.1990 -1.9873 24 1 5.5910 -4.2358 -3.3703 25 1 7.5332 -3.7118 -2.0156 26 1 6.0926 -5.5646 -1.4051 27 6 2.0760 -0.7892 -1.2085 28 1 -0.3632 0.5247 -0.8837 29 1 -0.3633 -1.0276 -0.0125 30 1 -0.3632 0.5029 0.8962 31 1 2.5903 1.6843 0.7396 32 1 3.2970 3.3855 0.8522 33 1 3.7095 7.1291 -0.8924 34 1 0.9374 5.8145 -4.8326 35 1 2.1887 -0.1515 2.0860 36 1 1.4515 -1.6546 1.4367 37 1 3.8030 -2.1379 1.2121 38 1 4.1955 -0.4420 0.7940 39 1 6.1489 -3.3204 0.7171 40 1 1.3141 -1.4754 -1.5781 41 1 2.3687 -0.0994 -2.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046335393.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:08 Heat of formation + Delta-G solvation = 56.609267 kcal Electronic energy + Delta-G solvation = -26371.427796 eV Core-core repulsion = 22673.026725 eV Total energy + Delta-G solvation = -3698.401072 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.50275 -41.35586 -39.59091 -38.79682 -35.81051 -34.45500 -33.77251 -32.45523 -31.58411 -30.78986 -30.30796 -27.56571 -26.10076 -25.29233 -24.22286 -23.45938 -22.36259 -21.86698 -20.59801 -19.63245 -19.06350 -18.67671 -18.31507 -17.19678 -16.78620 -16.76112 -16.36024 -15.92228 -15.90198 -15.62367 -15.54835 -14.86804 -14.71741 -14.33956 -14.08300 -14.05923 -13.66726 -13.57674 -13.31470 -13.15089 -12.85869 -12.80584 -12.12358 -12.06955 -11.99844 -11.97836 -11.75074 -11.68294 -11.46907 -11.24427 -10.76954 -10.54829 -10.28236 -10.08946 -9.51115 -8.89634 -7.80483 -5.23718 -0.73248 0.22460 1.38965 1.43991 1.44194 1.54499 1.83053 1.94217 2.05066 2.46497 2.76110 3.04588 3.20436 3.29664 3.43964 3.58631 3.69348 3.77134 3.85579 4.00410 4.10767 4.15282 4.19469 4.53625 4.62421 4.66330 4.75765 4.82928 4.86073 4.90300 5.00899 5.07534 5.09059 5.30789 5.31288 5.41507 5.57538 5.64213 5.79640 6.20681 6.30195 6.45908 6.54018 6.80478 7.07858 7.12075 7.75998 8.38962 9.20911 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016251 B = 0.003653 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.605275 B = 7663.308128 C = 7971.088331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.171 3.829 3 N -0.694 5.694 4 C 0.568 3.432 5 O -0.569 6.569 6 C -0.190 4.190 7 C 0.142 3.858 8 N -0.499 5.499 9 C 0.197 3.803 10 C -0.032 4.032 11 N -0.505 5.505 12 C 0.281 3.719 13 N -0.579 5.579 14 H 0.441 0.559 15 C 0.107 3.893 16 C -0.128 4.128 17 C 0.153 3.847 18 N -0.624 5.624 19 C -0.242 4.242 20 H 0.069 0.931 21 C -0.059 4.059 22 N -0.942 5.942 23 Si 0.975 3.025 24 H -0.273 1.273 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.137 3.863 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.409 0.591 32 H 0.185 0.815 33 H 0.196 0.804 34 H 0.273 0.727 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.076 0.924 38 H -0.007 1.007 39 H 0.248 0.752 40 H 0.023 0.977 41 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.666 16.839 -1.146 19.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.084 3.916 3 N -0.344 5.344 4 C 0.356 3.644 5 O -0.450 6.450 6 C -0.199 4.199 7 C -0.010 4.010 8 N -0.209 5.209 9 C 0.032 3.968 10 C -0.153 4.153 11 N -0.225 5.225 12 C -0.006 4.006 13 N -0.189 5.189 14 H 0.283 0.717 15 C -0.015 4.015 16 C -0.166 4.166 17 C 0.029 3.971 18 N -0.350 5.350 19 C -0.371 4.371 20 H 0.087 0.913 21 C -0.252 4.252 22 N -0.592 5.592 23 Si 0.804 3.196 24 H -0.198 1.198 25 H -0.218 1.218 26 H -0.213 1.213 27 C 0.011 3.989 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.247 0.753 32 H 0.202 0.798 33 H 0.213 0.787 34 H 0.288 0.712 35 H 0.122 0.878 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.011 0.989 39 H 0.058 0.942 40 H 0.041 0.959 41 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -10.258 17.478 -1.226 20.303 hybrid contribution 0.219 -2.179 -1.106 2.453 sum -10.039 15.299 -2.332 18.447 Atomic orbital electron populations 1.21949 0.91832 1.02959 1.03007 1.21222 0.94453 0.80213 0.95686 1.45777 1.53456 1.11966 1.23242 1.18061 0.79603 0.84676 0.82090 1.90649 1.40823 1.77338 1.36168 1.19981 1.08147 0.94234 0.97492 1.23109 0.89836 0.92518 0.95582 1.67783 1.22702 1.03507 1.26893 1.22786 0.89423 0.99854 0.84750 1.20443 1.05238 0.91215 0.98357 1.70502 1.16214 1.31692 1.04115 1.26687 0.95230 0.78866 0.99775 1.43370 1.42782 1.16349 1.16443 0.71684 1.18962 0.96528 0.96558 0.89462 1.23223 0.97443 0.99817 0.96145 1.21775 0.92394 0.98774 0.84182 1.44787 1.31167 1.50541 1.08489 1.19385 1.06951 1.17576 0.93217 0.91288 1.25513 0.99795 1.02187 0.97685 1.70007 1.30053 1.47055 1.12065 0.85057 0.78126 0.78386 0.78030 1.19818 1.21832 1.21267 1.21664 0.89056 0.92710 0.95451 0.92235 0.91122 0.90292 0.75299 0.79801 0.78741 0.71153 0.87846 0.89595 0.90597 0.98878 0.94167 0.95878 0.97243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.82 8.45 71.98 0.61 -3.21 16 2 C 0.17 5.61 0.81 4.80 0.00 5.61 16 3 N -0.69 -20.18 5.10 -420.66 -2.14 -22.33 16 4 C 0.57 17.48 6.99 86.69 0.61 18.08 16 5 O -0.57 -19.78 12.43 -4.00 -0.05 -19.83 16 6 C -0.19 -5.15 5.89 -20.02 -0.12 -5.27 16 7 C 0.14 3.37 10.71 84.96 0.91 4.28 16 8 N -0.50 -11.91 10.30 -193.91 -2.00 -13.91 16 9 C 0.20 4.33 11.25 84.99 0.96 5.29 16 10 C -0.03 -0.78 7.27 39.46 0.29 -0.50 16 11 N -0.51 -11.06 11.28 -191.90 -2.16 -13.22 16 12 C 0.28 4.37 12.98 179.98 2.34 6.71 16 13 N -0.58 -11.90 6.02 -190.33 -1.15 -13.04 16 14 H 0.44 8.54 7.92 -92.71 -0.73 7.80 16 15 C 0.11 2.80 6.93 39.50 0.27 3.07 16 16 C -0.13 -4.20 6.09 31.99 0.19 -4.01 16 17 C 0.15 7.16 5.87 86.85 0.51 7.67 16 18 N -0.62 -32.44 3.39 -691.97 -2.35 -34.78 16 19 C -0.24 -13.94 10.27 84.04 0.86 -13.08 16 20 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 21 C -0.06 -3.34 5.49 84.86 0.47 -2.88 16 22 N -0.94 -55.12 10.09 21.65 0.22 -54.90 16 23 Si 0.98 46.11 29.55 68.60 2.03 48.14 16 24 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 25 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 26 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 27 C 0.14 6.03 6.13 86.73 0.53 6.57 16 28 H 0.06 1.79 6.37 -2.39 -0.02 1.78 16 29 H 0.07 1.88 8.12 -2.39 -0.02 1.86 16 30 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.41 9.84 6.54 -92.71 -0.61 9.24 16 32 H 0.19 3.44 6.42 -2.91 -0.02 3.42 16 33 H 0.20 3.04 8.06 -2.91 -0.02 3.02 16 34 H 0.27 0.95 8.06 -2.91 -0.02 0.92 16 35 H 0.10 2.63 8.04 -2.39 -0.02 2.61 16 36 H 0.09 2.75 8.05 -2.39 -0.02 2.73 16 37 H 0.08 4.07 5.87 -2.39 -0.01 4.06 16 38 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 39 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 40 H 0.02 1.04 7.80 -2.39 -0.02 1.02 16 41 H 0.01 0.46 6.47 -2.38 -0.02 0.45 16 Total: -1.00 -75.97 334.77 0.58 -75.39 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: -0.24 Total: 20.15 kcal Atomic # 6 Polarization: 19.91 SS G_CDS: 8.43 Total: 28.34 kcal Atomic # 7 Polarization: -142.60 SS G_CDS: -9.58 Total: -152.18 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.05 Total: -19.83 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -75.97 0.58 -75.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046335393.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.000 kcal (2) G-P(sol) polarization free energy of solvation -75.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds