Wall clock time and date at job start Tue Mar 31 2020 10:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 110.91586 * 2 1 4 4 C 1.34775 * 119.99869 * 56.10345 * 3 2 1 5 5 O 1.21577 * 119.99948 * 359.97438 * 4 3 2 6 6 C 1.47689 * 120.00192 * 179.97438 * 4 3 2 7 7 C 1.39980 * 120.38016 * 0.02562 * 6 4 3 8 8 N 1.31395 * 121.15806 * 180.02562 * 7 6 4 9 9 C 1.32545 * 121.79219 * 359.97438 * 8 7 6 10 10 N 1.37577 * 133.56621 * 179.97438 * 9 8 7 11 11 H 0.96999 * 126.23604 * 0.07357 * 10 9 8 12 12 C 1.36168 * 107.52586 * 180.02562 * 10 9 8 13 13 N 1.30061 * 110.11051 * 0.02562 * 12 10 9 14 14 C 1.35775 * 109.43691 * 359.97438 * 13 12 10 15 15 C 1.39487 * 133.74895 * 180.26665 * 14 13 12 16 16 C 1.55159 * 111.00109 * 236.10290 * 2 1 3 17 17 C 1.54325 * 102.94381 * 206.42374 * 16 2 1 18 18 N 1.47026 * 107.26644 * 22.19183 * 17 16 2 19 19 C 1.36935 * 125.64477 * 181.02318 * 18 17 16 20 20 H 1.08005 * 119.99877 * 180.02562 * 19 18 17 21 21 C 1.38811 * 120.00369 * 359.75402 * 19 18 17 22 22 N 1.31617 * 119.99773 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00451 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47154 * 89.99247 * 23 21 19 25 25 H 1.48496 * 109.47375 * 209.99772 * 23 21 19 26 26 H 1.48502 * 109.46736 * 329.99467 * 23 21 19 27 27 C 1.47420 * 108.70732 * 1.28881 * 18 17 16 28 28 H 1.08999 * 109.47151 * 183.89791 * 1 2 3 29 29 H 1.09001 * 109.46787 * 303.90001 * 1 2 3 30 30 H 1.09000 * 109.47168 * 63.90199 * 1 2 3 31 31 H 0.97003 * 120.00211 * 236.10262 * 3 2 1 32 32 H 1.08002 * 119.42797 * 359.97438 * 7 6 4 33 33 H 1.07990 * 124.94306 * 179.97438 * 12 10 9 34 34 H 1.08001 * 120.97089 * 359.97438 * 15 14 13 35 35 H 1.08995 * 110.72318 * 88.05873 * 16 2 1 36 36 H 1.09004 * 110.87132 * 324.85736 * 16 2 1 37 37 H 1.08999 * 109.88324 * 262.77933 * 17 16 2 38 38 H 1.09001 * 109.88412 * 141.60830 * 17 16 2 39 39 H 0.97004 * 120.00382 * 180.02562 * 22 21 19 40 40 H 1.08998 * 110.36863 * 94.48168 * 27 18 17 41 41 H 1.08994 * 110.36906 * 216.80715 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0530 1.3684 0.0000 4 6 1.6855 2.2303 0.9688 5 8 0.9196 1.8722 1.8425 6 6 2.2132 3.6097 0.9692 7 6 3.0950 4.0306 -0.0331 8 7 3.5741 5.2540 -0.0473 9 6 3.2473 6.1427 0.8802 10 7 3.5938 7.4560 1.0989 11 1 4.1911 7.9901 0.5522 12 6 2.9446 7.8698 2.2221 13 7 2.2254 6.9001 2.7058 14 6 2.3659 5.7996 1.9232 15 6 1.8344 4.5107 1.9669 16 6 2.0861 -0.8078 -1.2023 17 6 3.4674 -1.2742 -0.6963 18 7 3.4271 -1.2432 0.7731 19 6 4.4640 -1.5669 1.6069 20 1 4.3333 -1.5121 2.6776 21 6 5.6813 -1.9709 1.0761 22 7 5.8388 -2.0433 -0.2286 23 14 7.0956 -2.4132 2.2135 24 1 7.0374 -3.8617 2.5355 25 1 8.3846 -2.1065 1.5430 26 1 6.9890 -1.6229 3.4662 27 6 2.0836 -0.8120 1.2003 28 1 -0.3633 -1.0253 0.0699 29 1 -0.3633 0.5732 0.8530 30 1 -0.3633 0.4521 -0.9229 31 1 2.6638 1.6543 -0.6973 32 1 3.3874 3.3374 -0.8080 33 1 3.0172 8.8589 2.6495 34 1 1.1525 4.2170 2.7513 35 1 2.1921 -0.1699 -2.0797 36 1 1.4477 -1.6631 -1.4241 37 1 4.2426 -0.5997 -1.0601 38 1 3.6649 -2.2894 -1.0404 39 1 6.6893 -2.3259 -0.5996 40 1 1.4524 -1.6783 1.3987 41 1 2.1516 -0.1804 2.0859 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046352094.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:55 Heat of formation + Delta-G solvation = 86.331843 kcal Electronic energy + Delta-G solvation = -26133.640939 eV Core-core repulsion = 22436.528735 eV Total energy + Delta-G solvation = -3697.112204 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.58385 -40.07175 -38.34698 -37.09545 -34.02612 -33.82880 -32.21109 -31.35506 -30.33412 -29.43571 -28.63251 -25.65289 -24.72414 -24.00638 -23.51432 -22.03172 -20.99765 -20.14659 -19.23083 -18.82181 -18.03175 -17.16946 -16.58063 -16.15043 -15.94472 -15.35078 -14.66066 -14.59522 -14.47719 -14.09621 -13.78617 -13.64985 -13.22004 -13.19848 -12.80853 -12.69058 -12.02255 -11.90273 -11.80985 -11.64663 -11.37468 -11.31411 -10.87437 -10.86603 -10.41294 -10.35218 -10.07894 -10.01937 -9.64794 -9.64127 -9.22125 -9.08160 -8.83769 -8.65579 -8.51068 -6.77946 -5.68772 -3.00445 0.56240 0.68466 2.24533 2.48186 3.00659 3.30096 3.42393 3.47856 3.49537 3.82329 3.87017 4.14090 4.47097 4.53196 4.69146 4.80218 4.82435 5.05626 5.25881 5.40804 5.49048 5.50885 5.63849 5.74689 5.86348 5.89002 6.04897 6.14485 6.18866 6.23862 6.38091 6.42222 6.55323 6.70846 6.76418 6.82104 7.11384 7.36829 7.56368 7.57549 7.58268 7.81417 7.86078 8.28284 8.49724 9.25945 9.85927 10.51681 11.43252 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013499 B = 0.003920 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.773567 B = 7141.379932 C = 8275.279250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.157 3.843 3 N -0.693 5.693 4 C 0.571 3.429 5 O -0.534 6.534 6 C -0.190 4.190 7 C 0.179 3.821 8 N -0.486 5.486 9 C 0.254 3.746 10 N -0.589 5.589 11 H 0.430 0.570 12 C 0.272 3.728 13 N -0.480 5.480 14 C -0.010 4.010 15 C 0.046 3.954 16 C -0.147 4.147 17 C 0.177 3.823 18 N -0.603 5.603 19 C -0.221 4.221 20 H 0.076 0.924 21 C -0.009 4.009 22 N -0.924 5.924 23 Si 0.909 3.091 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.133 3.867 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.049 0.951 31 H 0.397 0.603 32 H 0.171 0.829 33 H 0.226 0.774 34 H 0.156 0.844 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.045 0.955 38 H 0.044 0.956 39 H 0.251 0.749 40 H 0.027 0.973 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.419 18.275 -2.513 19.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.071 3.929 3 N -0.343 5.343 4 C 0.357 3.643 5 O -0.412 6.412 6 C -0.198 4.198 7 C 0.010 3.990 8 N -0.198 5.198 9 C 0.018 3.982 10 N -0.204 5.204 11 H 0.269 0.731 12 C -0.016 4.016 13 N -0.199 5.199 14 C -0.129 4.129 15 C 0.019 3.981 16 C -0.186 4.186 17 C 0.052 3.948 18 N -0.330 5.330 19 C -0.350 4.350 20 H 0.094 0.906 21 C -0.205 4.205 22 N -0.572 5.572 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 C 0.006 3.994 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.233 0.767 32 H 0.188 0.812 33 H 0.242 0.758 34 H 0.174 0.826 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.045 0.955 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.707 18.227 -1.780 19.870 hybrid contribution 1.600 -0.044 -0.158 1.609 sum -6.107 18.183 -1.938 19.279 Atomic orbital electron populations 1.22047 0.94063 1.02496 1.02584 1.21550 0.92796 0.80320 0.98267 1.45692 1.48268 1.11887 1.28479 1.17661 0.81014 0.83819 0.81845 1.90726 1.35851 1.78008 1.36592 1.20788 1.03738 0.96130 0.99174 1.22799 0.90241 0.90205 0.95781 1.66411 1.26082 1.02168 1.25144 1.19155 0.97173 0.86991 0.94922 1.42855 1.42027 1.09567 1.25953 0.73056 1.25505 0.91141 1.00241 0.84721 1.70488 1.22700 0.98730 1.27972 1.19557 1.02172 0.95302 0.95868 1.20852 0.93681 0.87861 0.95755 1.23238 1.00512 0.98969 0.95855 1.21168 0.89965 0.99994 0.83696 1.44446 1.07658 1.79046 1.01803 1.19063 0.89445 1.37463 0.89015 0.90598 1.24743 0.97742 1.01981 0.95985 1.69941 1.24233 1.53931 1.09137 0.86149 0.81995 0.78233 0.79620 1.21651 1.21759 1.20785 1.21922 0.87590 0.94888 0.94999 0.91832 0.90243 0.93161 0.76726 0.81191 0.75760 0.82618 0.91689 0.90748 0.93634 0.93768 0.93892 0.95524 0.93127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 8.59 37.16 0.32 -1.99 16 2 C 0.16 2.71 0.82 -129.55 -0.11 2.61 16 3 N -0.69 -11.00 5.14 -46.49 -0.24 -11.24 16 4 C 0.57 9.42 7.16 -12.40 -0.09 9.33 16 5 O -0.53 -10.15 13.23 5.30 0.07 -10.08 16 6 C -0.19 -2.75 5.89 -104.85 -0.62 -3.36 16 7 C 0.18 2.33 10.69 -17.09 -0.18 2.15 16 8 N -0.49 -6.50 10.37 -11.96 -0.12 -6.62 16 9 C 0.25 3.19 8.45 -155.64 -1.31 1.88 16 10 N -0.59 -4.75 6.20 -13.22 -0.08 -4.84 16 11 H 0.43 1.98 8.96 -40.82 -0.37 1.62 16 12 C 0.27 2.02 12.97 -89.70 -1.16 0.86 16 13 N -0.48 -5.80 11.29 -12.02 -0.14 -5.94 16 14 C -0.01 -0.13 7.23 -84.69 -0.61 -0.74 16 15 C 0.05 0.66 9.75 -38.58 -0.38 0.29 16 16 C -0.15 -2.52 5.96 -24.89 -0.15 -2.67 16 17 C 0.18 4.07 5.36 -3.06 -0.02 4.06 16 18 N -0.60 -15.26 3.39 -169.93 -0.58 -15.83 16 19 C -0.22 -6.24 10.28 -15.06 -0.15 -6.39 16 20 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 21 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 22 N -0.92 -26.74 10.31 55.49 0.57 -26.16 16 23 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 27 C 0.13 2.87 6.18 -2.41 -0.01 2.86 16 28 H 0.06 0.90 8.07 -51.93 -0.42 0.48 16 29 H 0.08 1.31 5.91 -51.93 -0.31 1.00 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.40 5.51 6.55 -40.82 -0.27 5.24 16 32 H 0.17 1.83 6.39 -52.49 -0.34 1.50 16 33 H 0.23 0.40 8.06 -52.49 -0.42 -0.02 16 34 H 0.16 2.20 7.72 -52.49 -0.41 1.79 16 35 H 0.06 0.95 8.09 -51.93 -0.42 0.53 16 36 H 0.07 1.20 8.04 -51.93 -0.42 0.78 16 37 H 0.05 1.14 7.40 -51.93 -0.38 0.76 16 38 H 0.04 1.15 7.49 -51.93 -0.39 0.76 16 39 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.03 0.58 7.99 -51.93 -0.41 0.17 16 41 H 0.05 1.18 6.88 -51.93 -0.36 0.82 16 LS Contribution 337.45 15.07 5.09 5.09 Total: -1.00 -35.69 337.45 -9.90 -45.59 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -4.87 Total: 4.13 kcal Atomic # 6 Polarization: 13.09 SS G_CDS: -4.57 Total: 8.52 kcal Atomic # 7 Polarization: -70.05 SS G_CDS: -0.58 Total: -70.63 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.07 Total: -10.08 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.69 -9.90 -45.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046352094.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.920 kcal (2) G-P(sol) polarization free energy of solvation -35.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds