Wall clock time and date at job start Tue Mar 31 2020 10:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 110.91586 * 2 1 4 4 C 1.34775 * 119.99869 * 56.10345 * 3 2 1 5 5 O 1.21577 * 119.99948 * 359.97438 * 4 3 2 6 6 C 1.47689 * 120.00192 * 179.97438 * 4 3 2 7 7 C 1.39980 * 120.38016 * 0.02562 * 6 4 3 8 8 N 1.31395 * 121.15806 * 180.02562 * 7 6 4 9 9 C 1.32545 * 121.79219 * 359.97438 * 8 7 6 10 10 N 1.37577 * 133.56621 * 179.97438 * 9 8 7 11 11 H 0.96999 * 126.23604 * 0.07357 * 10 9 8 12 12 C 1.36168 * 107.52586 * 180.02562 * 10 9 8 13 13 N 1.30061 * 110.11051 * 0.02562 * 12 10 9 14 14 C 1.35775 * 109.43691 * 359.97438 * 13 12 10 15 15 C 1.39487 * 133.74895 * 180.26665 * 14 13 12 16 16 C 1.55159 * 111.00109 * 236.10290 * 2 1 3 17 17 C 1.54325 * 102.94381 * 206.42374 * 16 2 1 18 18 N 1.47026 * 107.26644 * 22.19183 * 17 16 2 19 19 C 1.36935 * 125.64477 * 181.02318 * 18 17 16 20 20 H 1.08005 * 119.99877 * 180.02562 * 19 18 17 21 21 C 1.38811 * 120.00369 * 359.75402 * 19 18 17 22 22 N 1.31617 * 119.99773 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00451 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47154 * 89.99247 * 23 21 19 25 25 H 1.48496 * 109.47375 * 209.99772 * 23 21 19 26 26 H 1.48502 * 109.46736 * 329.99467 * 23 21 19 27 27 C 1.47420 * 108.70732 * 1.28881 * 18 17 16 28 28 H 1.08999 * 109.47151 * 183.89791 * 1 2 3 29 29 H 1.09001 * 109.46787 * 303.90001 * 1 2 3 30 30 H 1.09000 * 109.47168 * 63.90199 * 1 2 3 31 31 H 0.97003 * 120.00211 * 236.10262 * 3 2 1 32 32 H 1.08002 * 119.42797 * 359.97438 * 7 6 4 33 33 H 1.07990 * 124.94306 * 179.97438 * 12 10 9 34 34 H 1.08001 * 120.97089 * 359.97438 * 15 14 13 35 35 H 1.08995 * 110.72318 * 88.05873 * 16 2 1 36 36 H 1.09004 * 110.87132 * 324.85736 * 16 2 1 37 37 H 1.08999 * 109.88324 * 262.77933 * 17 16 2 38 38 H 1.09001 * 109.88412 * 141.60830 * 17 16 2 39 39 H 0.97004 * 120.00382 * 180.02562 * 22 21 19 40 40 H 1.08998 * 110.36863 * 94.48168 * 27 18 17 41 41 H 1.08994 * 110.36906 * 216.80715 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0530 1.3684 0.0000 4 6 1.6855 2.2303 0.9688 5 8 0.9196 1.8722 1.8425 6 6 2.2132 3.6097 0.9692 7 6 3.0950 4.0306 -0.0331 8 7 3.5741 5.2540 -0.0473 9 6 3.2473 6.1427 0.8802 10 7 3.5938 7.4560 1.0989 11 1 4.1911 7.9901 0.5522 12 6 2.9446 7.8698 2.2221 13 7 2.2254 6.9001 2.7058 14 6 2.3659 5.7996 1.9232 15 6 1.8344 4.5107 1.9669 16 6 2.0861 -0.8078 -1.2023 17 6 3.4674 -1.2742 -0.6963 18 7 3.4271 -1.2432 0.7731 19 6 4.4640 -1.5669 1.6069 20 1 4.3333 -1.5121 2.6776 21 6 5.6813 -1.9709 1.0761 22 7 5.8388 -2.0433 -0.2286 23 14 7.0956 -2.4132 2.2135 24 1 7.0374 -3.8617 2.5355 25 1 8.3846 -2.1065 1.5430 26 1 6.9890 -1.6229 3.4662 27 6 2.0836 -0.8120 1.2003 28 1 -0.3633 -1.0253 0.0699 29 1 -0.3633 0.5732 0.8530 30 1 -0.3633 0.4521 -0.9229 31 1 2.6638 1.6543 -0.6973 32 1 3.3874 3.3374 -0.8080 33 1 3.0172 8.8589 2.6495 34 1 1.1525 4.2170 2.7513 35 1 2.1921 -0.1699 -2.0797 36 1 1.4477 -1.6631 -1.4241 37 1 4.2426 -0.5997 -1.0601 38 1 3.6649 -2.2894 -1.0404 39 1 6.6893 -2.3259 -0.5996 40 1 1.4524 -1.6783 1.3987 41 1 2.1516 -0.1804 2.0859 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046352094.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:54 Heat of formation + Delta-G solvation = 61.249598 kcal Electronic energy + Delta-G solvation = -26134.728587 eV Core-core repulsion = 22436.528735 eV Total energy + Delta-G solvation = -3698.199852 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.43534 -41.38070 -39.51489 -38.51982 -35.69448 -34.77007 -33.81199 -32.51352 -31.76611 -30.67653 -30.17061 -27.48261 -25.88309 -25.16567 -24.92434 -22.91023 -22.35293 -21.79255 -20.58484 -19.72445 -19.27210 -18.69621 -17.92173 -17.22355 -16.85576 -16.83149 -16.56487 -15.98992 -15.58812 -15.50894 -15.14287 -14.92475 -14.57215 -14.29552 -14.08346 -13.83842 -13.74062 -13.50775 -13.34894 -13.05184 -12.82241 -12.73353 -12.29778 -12.22616 -12.07124 -12.02934 -11.94394 -11.67832 -11.56238 -10.87810 -10.69016 -10.35386 -10.14873 -9.92011 -9.72387 -8.83584 -7.84200 -5.17190 -0.43960 -0.28573 1.44257 1.45074 1.50635 1.53729 1.68234 1.84959 2.09739 2.49136 2.73311 3.03308 3.32348 3.34250 3.54949 3.63319 3.68330 3.72622 3.79092 4.07754 4.15247 4.23281 4.26687 4.66770 4.68459 4.73652 4.77802 4.85884 4.91623 4.93755 4.97690 5.06971 5.13476 5.30497 5.42688 5.45408 5.65779 5.72410 5.80990 6.11885 6.22437 6.55677 6.60652 6.68932 7.14118 7.22418 7.79799 8.43740 9.25406 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013499 B = 0.003920 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.773567 B = 7141.379932 C = 8275.279250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.167 3.833 3 N -0.690 5.690 4 C 0.571 3.429 5 O -0.565 6.565 6 C -0.199 4.199 7 C 0.175 3.825 8 N -0.491 5.491 9 C 0.242 3.758 10 N -0.574 5.574 11 H 0.448 0.552 12 C 0.307 3.693 13 N -0.526 5.526 14 C -0.024 4.024 15 C 0.031 3.969 16 C -0.128 4.128 17 C 0.183 3.817 18 N -0.621 5.621 19 C -0.242 4.242 20 H 0.067 0.933 21 C -0.056 4.056 22 N -0.943 5.943 23 Si 0.970 3.030 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.278 1.278 27 C 0.129 3.871 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.408 0.592 32 H 0.189 0.811 33 H 0.285 0.715 34 H 0.146 0.854 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.021 0.979 38 H 0.009 0.991 39 H 0.247 0.753 40 H 0.028 0.972 41 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.408 20.593 -3.299 22.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.081 3.919 3 N -0.340 5.340 4 C 0.358 3.642 5 O -0.445 6.445 6 C -0.207 4.207 7 C 0.006 3.994 8 N -0.204 5.204 9 C 0.004 3.996 10 N -0.190 5.190 11 H 0.292 0.708 12 C 0.019 3.981 13 N -0.246 5.246 14 C -0.143 4.143 15 C 0.003 3.997 16 C -0.166 4.166 17 C 0.059 3.941 18 N -0.347 5.347 19 C -0.371 4.371 20 H 0.085 0.915 21 C -0.250 4.250 22 N -0.592 5.592 23 Si 0.799 3.201 24 H -0.213 1.213 25 H -0.216 1.216 26 H -0.203 1.203 27 C 0.003 3.997 28 H 0.093 0.907 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.245 0.755 32 H 0.206 0.794 33 H 0.300 0.700 34 H 0.164 0.836 35 H 0.119 0.881 36 H 0.111 0.889 37 H 0.039 0.961 38 H 0.027 0.973 39 H 0.057 0.943 40 H 0.045 0.955 41 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -7.693 20.578 -2.594 22.122 hybrid contribution 1.616 -0.621 0.182 1.741 sum -6.077 19.958 -2.412 21.002 Atomic orbital electron populations 1.21972 0.91732 1.03250 1.03303 1.21422 0.94291 0.80398 0.95830 1.45643 1.48401 1.11240 1.28749 1.17952 0.80410 0.84561 0.81259 1.90707 1.37304 1.78762 1.37719 1.20595 1.04870 0.95013 1.00229 1.23016 0.89920 0.90654 0.95824 1.66479 1.26120 1.02333 1.25423 1.19447 0.97177 0.88536 0.94487 1.42953 1.41876 1.07953 1.26223 0.70835 1.26734 0.87538 1.00960 0.82841 1.70507 1.25467 0.99321 1.29307 1.19699 1.02390 0.95518 0.96690 1.20856 0.94194 0.88815 0.95813 1.23115 0.96804 1.00089 0.96630 1.20978 0.93007 0.97579 0.82556 1.44683 1.08336 1.78973 1.02707 1.19307 0.90804 1.37668 0.89299 0.91492 1.25454 0.99811 1.02267 0.97423 1.70130 1.24368 1.54394 1.10300 0.85209 0.79015 0.77883 0.78007 1.21278 1.21581 1.20346 1.22037 0.86342 0.95115 0.96193 0.90741 0.91845 0.90420 0.75496 0.79391 0.69966 0.83634 0.88125 0.88888 0.96115 0.97275 0.94325 0.95478 0.95607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.08 8.59 71.98 0.62 -3.46 16 2 C 0.17 5.63 0.82 5.07 0.00 5.64 16 3 N -0.69 -21.58 5.14 -419.27 -2.15 -23.73 16 4 C 0.57 19.19 7.16 86.74 0.62 19.81 16 5 O -0.56 -22.23 13.23 -3.96 -0.05 -22.29 16 6 C -0.20 -5.86 5.89 -20.01 -0.12 -5.98 16 7 C 0.17 4.49 10.69 85.18 0.91 5.40 16 8 N -0.49 -12.63 10.37 -191.76 -1.99 -14.61 16 9 C 0.24 5.73 8.45 133.91 1.13 6.86 16 10 N -0.57 -7.50 6.20 -195.74 -1.21 -8.72 16 11 H 0.45 2.50 8.96 -92.71 -0.83 1.67 16 12 C 0.31 3.46 12.97 180.03 2.33 5.79 16 13 N -0.53 -11.90 11.29 -191.94 -2.17 -14.07 16 14 C -0.02 -0.64 7.23 39.46 0.29 -0.36 16 15 C 0.03 0.92 9.75 22.92 0.22 1.14 16 16 C -0.13 -4.16 5.96 31.78 0.19 -3.97 16 17 C 0.18 8.57 5.36 86.73 0.46 9.04 16 18 N -0.62 -32.19 3.39 -691.55 -2.35 -34.54 16 19 C -0.24 -14.00 10.28 84.03 0.86 -13.14 16 20 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 21 C -0.06 -3.22 5.49 84.86 0.47 -2.75 16 22 N -0.94 -55.67 10.31 21.65 0.22 -55.45 16 23 Si 0.97 46.77 29.55 68.60 2.03 48.80 16 24 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 25 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 26 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 27 C 0.13 5.70 6.18 86.93 0.54 6.24 16 28 H 0.07 1.94 8.07 -2.39 -0.02 1.92 16 29 H 0.06 2.05 5.91 -2.39 -0.01 2.03 16 30 H 0.08 1.79 8.14 -2.39 -0.02 1.78 16 31 H 0.41 10.89 6.55 -92.71 -0.61 10.29 16 32 H 0.19 3.89 6.39 -2.91 -0.02 3.88 16 33 H 0.29 -0.62 8.06 -2.92 -0.02 -0.64 16 34 H 0.15 4.44 7.72 -2.91 -0.02 4.42 16 35 H 0.10 2.60 8.09 -2.39 -0.02 2.59 16 36 H 0.09 2.74 8.04 -2.38 -0.02 2.72 16 37 H 0.02 1.05 7.40 -2.39 -0.02 1.04 16 38 H 0.01 0.48 7.49 -2.39 -0.02 0.46 16 39 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 40 H 0.03 1.20 7.99 -2.39 -0.02 1.18 16 41 H 0.03 1.25 6.88 -2.39 -0.02 1.23 16 Total: -1.00 -81.34 337.45 0.52 -80.82 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -0.34 Total: 13.52 kcal Atomic # 6 Polarization: 21.73 SS G_CDS: 8.53 Total: 30.27 kcal Atomic # 7 Polarization: -141.47 SS G_CDS: -9.65 Total: -151.12 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.05 Total: -22.29 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -81.34 0.52 -80.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046352094.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.068 kcal (2) G-P(sol) polarization free energy of solvation -81.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds