Wall clock time and date at job start Tue Mar 31 2020 10:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 110.64121 * 2 1 4 4 C 1.34773 * 120.00085 * 300.69960 * 3 2 1 5 5 O 1.21568 * 119.99957 * 359.97438 * 4 3 2 6 6 C 1.47691 * 120.00255 * 179.97438 * 4 3 2 7 7 C 1.39986 * 120.37932 * 0.02562 * 6 4 3 8 8 N 1.31388 * 121.15624 * 180.02562 * 7 6 4 9 9 C 1.32550 * 121.79500 * 0.02562 * 8 7 6 10 10 N 1.37575 * 133.56940 * 180.29822 * 9 8 7 11 11 H 0.97001 * 126.24100 * 359.96947 * 10 9 8 12 12 C 1.36164 * 107.52677 * 180.09025 * 10 9 8 13 13 N 1.30063 * 110.11019 * 359.62888 * 12 10 9 14 14 C 1.35773 * 109.43224 * 0.22976 * 13 12 10 15 15 C 1.39491 * 133.74071 * 180.02562 * 14 13 12 16 16 C 1.55158 * 110.71998 * 123.14197 * 2 1 3 17 17 C 1.55392 * 101.36834 * 153.94995 * 16 2 1 18 18 N 1.47428 * 104.87174 * 323.01631 * 17 16 2 19 19 C 1.36929 * 125.64772 * 204.09614 * 18 17 16 20 20 H 1.08003 * 120.00299 * 180.02562 * 19 18 17 21 21 C 1.38809 * 120.00213 * 0.04080 * 19 18 17 22 22 N 1.31615 * 119.99987 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 120.00208 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47195 * 90.00100 * 23 21 19 25 25 H 1.48500 * 109.47100 * 210.00253 * 23 21 19 26 26 H 1.48498 * 109.46810 * 329.99907 * 23 21 19 27 27 C 1.47021 * 108.70304 * 24.13088 * 18 17 16 28 28 H 1.08993 * 109.46828 * 59.30374 * 1 2 3 29 29 H 1.09007 * 109.46840 * 179.29887 * 1 2 3 30 30 H 1.08998 * 109.47200 * 299.29613 * 1 2 3 31 31 H 0.97007 * 120.00090 * 120.69980 * 3 2 1 32 32 H 1.07998 * 119.42330 * 0.02562 * 7 6 4 33 33 H 1.08002 * 124.94835 * 179.89985 * 12 10 9 34 34 H 1.08001 * 120.97065 * 359.97438 * 15 14 13 35 35 H 1.09000 * 111.00661 * 272.11796 * 16 2 1 36 36 H 1.08997 * 111.00408 * 35.97091 * 16 2 1 37 37 H 1.08997 * 110.34423 * 204.16940 * 17 16 2 38 38 H 1.08994 * 110.35098 * 81.86649 * 17 16 2 39 39 H 0.97001 * 120.00326 * 179.97438 * 22 21 19 40 40 H 1.08997 * 109.88489 * 239.52340 * 27 18 17 41 41 H 1.09001 * 110.01331 * 118.43130 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3709 0.0000 4 6 1.7263 2.2116 -1.0036 5 8 1.0094 1.8321 -1.9091 6 6 2.2465 3.5939 -1.0033 7 6 3.0730 4.0391 0.0351 8 7 3.5438 5.2656 0.0509 9 6 3.2604 6.1349 -0.9088 10 7 3.6142 7.4447 -1.1365 11 1 4.1836 7.9913 -0.5726 12 6 3.0172 7.8350 -2.2964 13 7 2.3290 6.8519 -2.7980 14 6 2.4356 5.7669 -1.9889 15 6 1.9184 4.4724 -2.0384 16 6 2.0789 -0.7934 1.2151 17 6 3.4674 -1.2455 0.6838 18 7 3.2472 -1.5461 -0.7426 19 6 4.0078 -2.3900 -1.5070 20 1 3.7635 -2.5438 -2.5477 21 6 5.0928 -3.0480 -0.9443 22 7 5.3901 -2.8612 0.3241 23 14 6.1309 -4.1987 -1.9874 24 1 7.2375 -3.4339 -2.6162 25 1 6.6954 -5.2710 -1.1291 26 1 5.2848 -4.8059 -3.0459 27 6 2.0761 -0.7892 -1.2086 28 1 -0.3633 0.5246 -0.8836 29 1 -0.3633 -1.0277 -0.0126 30 1 -0.3633 0.5028 0.8962 31 1 2.6187 1.6736 0.7224 32 1 3.3282 3.3625 0.8373 33 1 3.1061 8.8166 -2.7382 34 1 1.2827 4.1587 -2.8532 35 1 2.1820 -0.1490 2.0882 36 1 1.4469 -1.6529 1.4383 37 1 3.8031 -2.1378 1.2121 38 1 4.1955 -0.4419 0.7940 39 1 6.1481 -3.3214 0.7175 40 1 1.3141 -1.4754 -1.5781 41 1 2.3686 -0.0993 -2.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046352095.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:57 Heat of formation + Delta-G solvation = 87.830469 kcal Electronic energy + Delta-G solvation = -25947.966415 eV Core-core repulsion = 22250.919197 eV Total energy + Delta-G solvation = -3697.047219 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.64004 -40.14440 -38.39763 -37.11023 -34.10503 -33.89235 -32.22629 -31.39240 -30.35953 -29.44481 -28.61734 -25.67437 -24.77432 -24.06573 -23.49746 -22.08096 -20.98152 -20.30697 -19.20754 -18.86379 -18.08260 -17.19572 -16.63820 -16.22060 -16.00056 -15.40543 -14.68427 -14.66041 -14.52095 -14.11138 -13.78749 -13.65280 -13.27033 -13.02005 -12.90831 -12.69377 -12.22689 -11.99279 -11.71840 -11.55315 -11.42893 -11.36660 -10.92059 -10.84337 -10.43603 -10.33837 -10.07114 -10.03569 -9.71264 -9.57570 -9.26240 -9.14050 -8.89553 -8.66051 -8.61013 -6.78905 -5.63015 -3.03137 0.50435 0.62129 2.19144 2.42887 2.95036 3.23719 3.42729 3.47878 3.49730 3.75877 3.81400 4.08674 4.41063 4.51999 4.62677 4.74688 4.76641 5.04172 5.24907 5.40490 5.44957 5.51368 5.58307 5.75093 5.80801 5.83828 6.04598 6.16401 6.19341 6.23992 6.35553 6.46402 6.52864 6.71017 6.71190 6.85153 7.13089 7.31864 7.46527 7.51096 7.65742 7.76246 7.86118 8.37054 8.44176 9.25658 9.86328 10.50975 11.41327 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016966 B = 0.003308 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.973073 B = 8461.329615 C = 9111.856665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.160 3.840 3 N -0.701 5.701 4 C 0.569 3.431 5 O -0.530 6.530 6 C -0.192 4.192 7 C 0.177 3.823 8 N -0.486 5.486 9 C 0.254 3.746 10 N -0.589 5.589 11 H 0.430 0.570 12 C 0.273 3.727 13 N -0.480 5.480 14 C -0.009 4.009 15 C 0.047 3.953 16 C -0.147 4.147 17 C 0.153 3.847 18 N -0.604 5.604 19 C -0.217 4.217 20 H 0.077 0.923 21 C -0.013 4.013 22 N -0.925 5.925 23 Si 0.914 3.086 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.137 3.863 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.396 0.604 32 H 0.171 0.829 33 H 0.227 0.773 34 H 0.157 0.843 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.108 0.892 38 H 0.011 0.989 39 H 0.251 0.749 40 H 0.031 0.969 41 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.913 20.611 2.371 21.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.074 3.926 3 N -0.352 5.352 4 C 0.355 3.645 5 O -0.407 6.407 6 C -0.200 4.200 7 C 0.008 3.992 8 N -0.198 5.198 9 C 0.018 3.982 10 N -0.204 5.204 11 H 0.270 0.730 12 C -0.015 4.015 13 N -0.199 5.199 14 C -0.129 4.129 15 C 0.019 3.981 16 C -0.186 4.186 17 C 0.028 3.972 18 N -0.330 5.330 19 C -0.345 4.345 20 H 0.095 0.905 21 C -0.208 4.208 22 N -0.574 5.574 23 Si 0.744 3.256 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.010 3.990 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.231 0.769 32 H 0.188 0.812 33 H 0.243 0.757 34 H 0.174 0.826 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.126 0.874 38 H 0.029 0.971 39 H 0.062 0.938 40 H 0.049 0.951 41 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -6.221 20.468 1.594 21.452 hybrid contribution 1.300 -0.193 0.158 1.324 sum -4.921 20.276 1.752 20.938 Atomic orbital electron populations 1.22057 0.94077 1.02387 1.02423 1.21393 0.93116 0.79907 0.98179 1.45889 1.51543 1.12537 1.25191 1.17688 0.80625 0.83879 0.82328 1.90755 1.37417 1.76983 1.35554 1.20797 1.04510 0.96244 0.98422 1.22788 0.90348 0.90000 0.96058 1.66404 1.25041 1.02704 1.25656 1.19147 0.97587 0.87080 0.94424 1.42862 1.44058 1.09935 1.23522 0.73027 1.25524 0.91979 1.00220 0.83799 1.70498 1.22176 0.98722 1.28466 1.19563 1.03022 0.95374 0.94897 1.20868 0.92926 0.87966 0.96321 1.23452 1.01319 0.98880 0.94974 1.22031 0.89271 1.00668 0.85273 1.44492 1.30532 1.50533 1.07444 1.19095 1.05910 1.16553 0.92943 0.90540 1.24750 0.98779 1.00798 0.96457 1.69767 1.30023 1.46673 1.10942 0.86075 0.80261 0.80239 0.78987 1.21745 1.21697 1.20691 1.21604 0.90299 0.93191 0.93883 0.90737 0.91676 0.93091 0.76854 0.81200 0.75714 0.82569 0.91782 0.90396 0.87417 0.97127 0.93831 0.95088 0.94885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 8.41 37.16 0.31 -2.01 16 2 C 0.16 2.78 0.80 -129.99 -0.10 2.68 16 3 N -0.70 -10.74 5.10 -46.89 -0.24 -10.98 16 4 C 0.57 9.13 6.99 -12.40 -0.09 9.05 16 5 O -0.53 -10.02 13.34 5.31 0.07 -9.94 16 6 C -0.19 -2.64 5.89 -104.85 -0.62 -3.26 16 7 C 0.18 2.15 10.69 -17.09 -0.18 1.97 16 8 N -0.49 -6.12 10.36 -11.96 -0.12 -6.24 16 9 C 0.25 3.03 8.45 -155.64 -1.31 1.71 16 10 N -0.59 -4.42 6.20 -13.22 -0.08 -4.50 16 11 H 0.43 1.74 8.96 -40.82 -0.37 1.37 16 12 C 0.27 1.90 12.97 -89.70 -1.16 0.74 16 13 N -0.48 -5.58 11.29 -12.02 -0.14 -5.71 16 14 C -0.01 -0.12 7.23 -84.69 -0.61 -0.73 16 15 C 0.05 0.65 9.75 -38.58 -0.38 0.27 16 16 C -0.15 -2.58 6.11 -24.32 -0.15 -2.73 16 17 C 0.15 3.55 5.88 -2.26 -0.01 3.53 16 18 N -0.60 -15.53 3.40 -169.77 -0.58 -16.11 16 19 C -0.22 -6.14 10.27 -15.06 -0.15 -6.29 16 20 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 21 C -0.01 -0.36 5.49 -17.43 -0.10 -0.46 16 22 N -0.92 -26.69 10.09 55.49 0.56 -26.13 16 23 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 27 C 0.14 3.03 6.16 -3.06 -0.02 3.01 16 28 H 0.07 1.24 6.20 -51.93 -0.32 0.92 16 29 H 0.06 0.97 8.12 -51.93 -0.42 0.55 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.40 5.06 6.51 -40.82 -0.27 4.80 16 32 H 0.17 1.63 6.39 -52.49 -0.34 1.29 16 33 H 0.23 0.31 8.06 -52.49 -0.42 -0.12 16 34 H 0.16 2.14 7.72 -52.49 -0.41 1.73 16 35 H 0.06 0.93 8.06 -51.93 -0.42 0.51 16 36 H 0.08 1.35 8.05 -51.93 -0.42 0.93 16 37 H 0.11 2.84 5.87 -51.93 -0.30 2.54 16 38 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.03 0.70 7.80 -51.93 -0.41 0.29 16 41 H 0.03 0.80 6.67 -51.93 -0.35 0.45 16 LS Contribution 336.58 15.07 5.07 5.07 Total: -1.00 -35.86 336.58 -9.88 -45.73 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -4.82 Total: 4.01 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: -4.58 Total: 7.47 kcal Atomic # 7 Polarization: -69.08 SS G_CDS: -0.60 Total: -69.67 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.07 Total: -9.94 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.86 -9.88 -45.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046352095.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.563 kcal (2) G-P(sol) polarization free energy of solvation -35.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds