Wall clock time and date at job start Tue Mar 31 2020 10:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 110.64121 * 2 1 4 4 C 1.34773 * 120.00085 * 300.69960 * 3 2 1 5 5 O 1.21568 * 119.99957 * 359.97438 * 4 3 2 6 6 C 1.47691 * 120.00255 * 179.97438 * 4 3 2 7 7 C 1.39986 * 120.37932 * 0.02562 * 6 4 3 8 8 N 1.31388 * 121.15624 * 180.02562 * 7 6 4 9 9 C 1.32550 * 121.79500 * 0.02562 * 8 7 6 10 10 N 1.37575 * 133.56940 * 180.29822 * 9 8 7 11 11 H 0.97001 * 126.24100 * 359.96947 * 10 9 8 12 12 C 1.36164 * 107.52677 * 180.09025 * 10 9 8 13 13 N 1.30063 * 110.11019 * 359.62888 * 12 10 9 14 14 C 1.35773 * 109.43224 * 0.22976 * 13 12 10 15 15 C 1.39491 * 133.74071 * 180.02562 * 14 13 12 16 16 C 1.55158 * 110.71998 * 123.14197 * 2 1 3 17 17 C 1.55392 * 101.36834 * 153.94995 * 16 2 1 18 18 N 1.47428 * 104.87174 * 323.01631 * 17 16 2 19 19 C 1.36929 * 125.64772 * 204.09614 * 18 17 16 20 20 H 1.08003 * 120.00299 * 180.02562 * 19 18 17 21 21 C 1.38809 * 120.00213 * 0.04080 * 19 18 17 22 22 N 1.31615 * 119.99987 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 120.00208 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47195 * 90.00100 * 23 21 19 25 25 H 1.48500 * 109.47100 * 210.00253 * 23 21 19 26 26 H 1.48498 * 109.46810 * 329.99907 * 23 21 19 27 27 C 1.47021 * 108.70304 * 24.13088 * 18 17 16 28 28 H 1.08993 * 109.46828 * 59.30374 * 1 2 3 29 29 H 1.09007 * 109.46840 * 179.29887 * 1 2 3 30 30 H 1.08998 * 109.47200 * 299.29613 * 1 2 3 31 31 H 0.97007 * 120.00090 * 120.69980 * 3 2 1 32 32 H 1.07998 * 119.42330 * 0.02562 * 7 6 4 33 33 H 1.08002 * 124.94835 * 179.89985 * 12 10 9 34 34 H 1.08001 * 120.97065 * 359.97438 * 15 14 13 35 35 H 1.09000 * 111.00661 * 272.11796 * 16 2 1 36 36 H 1.08997 * 111.00408 * 35.97091 * 16 2 1 37 37 H 1.08997 * 110.34423 * 204.16940 * 17 16 2 38 38 H 1.08994 * 110.35098 * 81.86649 * 17 16 2 39 39 H 0.97001 * 120.00326 * 179.97438 * 22 21 19 40 40 H 1.08997 * 109.88489 * 239.52340 * 27 18 17 41 41 H 1.09001 * 110.01331 * 118.43130 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3709 0.0000 4 6 1.7263 2.2116 -1.0036 5 8 1.0094 1.8321 -1.9091 6 6 2.2465 3.5939 -1.0033 7 6 3.0730 4.0391 0.0351 8 7 3.5438 5.2656 0.0509 9 6 3.2604 6.1349 -0.9088 10 7 3.6142 7.4447 -1.1365 11 1 4.1836 7.9913 -0.5726 12 6 3.0172 7.8350 -2.2964 13 7 2.3290 6.8519 -2.7980 14 6 2.4356 5.7669 -1.9889 15 6 1.9184 4.4724 -2.0384 16 6 2.0789 -0.7934 1.2151 17 6 3.4674 -1.2455 0.6838 18 7 3.2472 -1.5461 -0.7426 19 6 4.0078 -2.3900 -1.5070 20 1 3.7635 -2.5438 -2.5477 21 6 5.0928 -3.0480 -0.9443 22 7 5.3901 -2.8612 0.3241 23 14 6.1309 -4.1987 -1.9874 24 1 7.2375 -3.4339 -2.6162 25 1 6.6954 -5.2710 -1.1291 26 1 5.2848 -4.8059 -3.0459 27 6 2.0761 -0.7892 -1.2086 28 1 -0.3633 0.5246 -0.8836 29 1 -0.3633 -1.0277 -0.0126 30 1 -0.3633 0.5028 0.8962 31 1 2.6187 1.6736 0.7224 32 1 3.3282 3.3625 0.8373 33 1 3.1061 8.8166 -2.7382 34 1 1.2827 4.1587 -2.8532 35 1 2.1820 -0.1490 2.0882 36 1 1.4469 -1.6529 1.4383 37 1 3.8031 -2.1378 1.2121 38 1 4.1955 -0.4419 0.7940 39 1 6.1481 -3.3214 0.7175 40 1 1.3141 -1.4754 -1.5781 41 1 2.3686 -0.0993 -2.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046352095.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:56 Heat of formation + Delta-G solvation = 62.544686 kcal Electronic energy + Delta-G solvation = -25949.062889 eV Core-core repulsion = 22250.919197 eV Total energy + Delta-G solvation = -3698.143693 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.44388 -41.43458 -39.52520 -38.52616 -35.77596 -34.77894 -33.81281 -32.51898 -31.76872 -30.64613 -30.19059 -27.52226 -25.91076 -25.13938 -24.92422 -22.90804 -22.34310 -21.92624 -20.56685 -19.73478 -19.27032 -18.75367 -17.92284 -17.28939 -16.87732 -16.83843 -16.60215 -15.98985 -15.57566 -15.48725 -15.08457 -14.90870 -14.43770 -14.35073 -14.16170 -14.01319 -13.76628 -13.51216 -13.27640 -13.08811 -12.83401 -12.74769 -12.30475 -12.22605 -12.07193 -12.00899 -11.93769 -11.66718 -11.55220 -10.91640 -10.73331 -10.37251 -10.17593 -9.94124 -9.73243 -8.86002 -7.77098 -5.20044 -0.45423 -0.29143 1.45929 1.47050 1.50126 1.56125 1.67383 1.83620 2.05122 2.49445 2.71957 3.02577 3.31533 3.32382 3.54805 3.62811 3.68978 3.74060 3.76285 4.04778 4.14682 4.20713 4.25833 4.66028 4.67075 4.71806 4.78078 4.84819 4.89522 4.93893 4.95133 5.06219 5.14011 5.29763 5.38339 5.44970 5.63190 5.69515 5.83562 6.11320 6.33932 6.53647 6.59271 6.68306 7.13077 7.20717 7.79516 8.42713 9.23992 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016966 B = 0.003308 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.973073 B = 8461.329615 C = 9111.856665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.170 3.830 3 N -0.694 5.694 4 C 0.570 3.430 5 O -0.565 6.565 6 C -0.199 4.199 7 C 0.176 3.824 8 N -0.490 5.490 9 C 0.243 3.757 10 N -0.574 5.574 11 H 0.448 0.552 12 C 0.307 3.693 13 N -0.527 5.527 14 C -0.025 4.025 15 C 0.031 3.969 16 C -0.127 4.127 17 C 0.153 3.847 18 N -0.623 5.623 19 C -0.241 4.241 20 H 0.068 0.932 21 C -0.060 4.060 22 N -0.942 5.942 23 Si 0.976 3.024 24 H -0.289 1.289 25 H -0.287 1.287 26 H -0.274 1.274 27 C 0.136 3.864 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.410 0.590 32 H 0.194 0.806 33 H 0.285 0.715 34 H 0.144 0.856 35 H 0.106 0.894 36 H 0.085 0.915 37 H 0.076 0.924 38 H -0.004 1.004 39 H 0.248 0.752 40 H 0.023 0.977 41 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.717 22.891 3.426 23.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.084 3.916 3 N -0.346 5.346 4 C 0.357 3.643 5 O -0.445 6.445 6 C -0.208 4.208 7 C 0.007 3.993 8 N -0.203 5.203 9 C 0.005 3.995 10 N -0.190 5.190 11 H 0.292 0.708 12 C 0.019 3.981 13 N -0.247 5.247 14 C -0.144 4.144 15 C 0.003 3.997 16 C -0.165 4.165 17 C 0.029 3.971 18 N -0.349 5.349 19 C -0.371 4.371 20 H 0.086 0.914 21 C -0.253 4.253 22 N -0.592 5.592 23 Si 0.804 3.196 24 H -0.216 1.216 25 H -0.213 1.213 26 H -0.199 1.199 27 C 0.009 3.991 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.248 0.752 32 H 0.211 0.789 33 H 0.300 0.700 34 H 0.162 0.838 35 H 0.124 0.876 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.014 0.986 39 H 0.058 0.942 40 H 0.041 0.959 41 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -6.012 22.792 2.686 23.724 hybrid contribution 1.283 -0.740 -0.259 1.504 sum -4.729 22.052 2.427 22.683 Atomic orbital electron populations 1.21981 0.91982 1.02940 1.03157 1.21207 0.94454 0.80301 0.95637 1.45762 1.51655 1.11554 1.25610 1.18004 0.79923 0.84677 0.81686 1.90735 1.39066 1.77831 1.36835 1.20573 1.05754 0.94929 0.99496 1.23067 0.89794 0.90404 0.96052 1.66492 1.25061 1.02857 1.25841 1.19435 0.97531 0.88609 0.93939 1.42956 1.43771 1.08386 1.23849 0.70794 1.26730 0.88303 1.00850 0.82183 1.70511 1.24999 0.99434 1.29751 1.19696 1.03304 0.95535 0.95840 1.20865 0.93535 0.88982 0.96338 1.23306 0.97412 0.99784 0.96039 1.21873 0.92378 0.98828 0.84041 1.44771 1.31101 1.50514 1.08542 1.19356 1.06910 1.17572 0.93214 0.91361 1.25509 0.99811 1.02239 0.97719 1.69998 1.30082 1.47139 1.11961 0.85118 0.78518 0.78272 0.77658 1.21634 1.21350 1.19945 1.21683 0.89095 0.92760 0.95522 0.92253 0.91171 0.90128 0.75201 0.78938 0.70009 0.83800 0.87611 0.89644 0.90588 0.98631 0.94183 0.95926 0.97459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.17 8.41 71.98 0.61 -3.56 16 2 C 0.17 5.82 0.80 4.79 0.00 5.82 16 3 N -0.69 -20.81 5.10 -420.54 -2.14 -22.95 16 4 C 0.57 18.60 6.99 86.74 0.61 19.21 16 5 O -0.56 -22.24 13.34 -3.93 -0.05 -22.29 16 6 C -0.20 -5.57 5.89 -20.01 -0.12 -5.69 16 7 C 0.18 4.13 10.69 85.18 0.91 5.04 16 8 N -0.49 -11.67 10.36 -191.76 -1.99 -13.65 16 9 C 0.24 5.41 8.45 133.91 1.13 6.54 16 10 N -0.57 -6.83 6.20 -195.74 -1.21 -8.04 16 11 H 0.45 1.96 8.96 -92.71 -0.83 1.13 16 12 C 0.31 3.19 12.97 180.03 2.33 5.52 16 13 N -0.53 -11.50 11.29 -191.94 -2.17 -13.67 16 14 C -0.02 -0.64 7.23 39.46 0.29 -0.35 16 15 C 0.03 0.88 9.75 22.92 0.22 1.10 16 16 C -0.13 -4.22 6.11 32.16 0.20 -4.03 16 17 C 0.15 7.20 5.88 87.02 0.51 7.71 16 18 N -0.62 -32.92 3.40 -691.03 -2.35 -35.27 16 19 C -0.24 -14.08 10.27 84.03 0.86 -13.22 16 20 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 21 C -0.06 -3.44 5.49 84.86 0.47 -2.97 16 22 N -0.94 -55.33 10.09 21.65 0.22 -55.11 16 23 Si 0.98 46.58 29.55 68.60 2.03 48.61 16 24 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 25 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 26 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 27 C 0.14 6.17 6.16 86.73 0.53 6.71 16 28 H 0.06 1.95 6.20 -2.39 -0.01 1.94 16 29 H 0.07 1.98 8.12 -2.38 -0.02 1.96 16 30 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.41 9.83 6.51 -92.70 -0.60 9.22 16 32 H 0.19 3.38 6.39 -2.91 -0.02 3.36 16 33 H 0.28 -0.83 8.06 -2.91 -0.02 -0.85 16 34 H 0.14 4.31 7.72 -2.91 -0.02 4.28 16 35 H 0.11 2.68 8.06 -2.39 -0.02 2.66 16 36 H 0.09 2.77 8.05 -2.39 -0.02 2.75 16 37 H 0.08 4.09 5.87 -2.39 -0.01 4.07 16 38 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 39 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 40 H 0.02 1.06 7.80 -2.39 -0.02 1.04 16 41 H 0.01 0.37 6.67 -2.39 -0.02 0.36 16 Total: -1.00 -81.97 336.58 0.56 -81.41 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -0.33 Total: 13.14 kcal Atomic # 6 Polarization: 19.27 SS G_CDS: 8.55 Total: 27.83 kcal Atomic # 7 Polarization: -139.06 SS G_CDS: -9.64 Total: -148.70 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.05 Total: -22.29 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -81.97 0.56 -81.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046352095.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.958 kcal (2) G-P(sol) polarization free energy of solvation -81.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds