Wall clock time and date at job start Tue Mar 31 2020 10:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 110.63743 * 2 1 4 4 C 1.34778 * 120.00542 * 61.68644 * 3 2 1 5 5 O 1.21561 * 119.99524 * 359.97438 * 4 3 2 6 6 C 1.47762 * 120.00253 * 179.97438 * 4 3 2 7 7 C 1.39638 * 121.07244 * 359.71715 * 6 4 3 8 8 C 1.38336 * 119.37290 * 179.80931 * 7 6 4 9 9 N 1.31726 * 121.54873 * 0.45910 * 8 7 6 10 10 C 1.32111 * 121.94826 * 359.77876 * 9 8 7 11 11 N 1.37942 * 133.81020 * 179.97438 * 10 9 8 12 12 H 0.97001 * 126.36153 * 0.02562 * 11 10 9 13 13 C 1.35994 * 107.28813 * 179.97438 * 11 10 9 14 14 N 1.30286 * 110.05293 * 359.97438 * 13 11 10 15 15 C 1.34651 * 109.66894 * 359.97438 * 14 13 11 16 16 C 1.55153 * 110.72464 * 236.66197 * 2 1 3 17 17 C 1.55131 * 101.48647 * 205.96606 * 16 2 1 18 18 N 1.47426 * 104.71847 * 37.29562 * 17 16 2 19 19 C 1.36945 * 125.64675 * 155.81671 * 18 17 16 20 20 H 1.07997 * 119.99756 * 179.68946 * 19 18 17 21 21 C 1.38805 * 119.99878 * 359.68852 * 19 18 17 22 22 N 1.31624 * 120.00257 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47187 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 300.00154 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 C 1.47026 * 108.70569 * 335.55014 * 18 17 16 28 28 H 1.08994 * 109.47385 * 298.31171 * 1 2 3 29 29 H 1.09001 * 109.47019 * 58.32004 * 1 2 3 30 30 H 1.09001 * 109.46551 * 178.31145 * 1 2 3 31 31 H 0.97002 * 119.99932 * 241.68211 * 3 2 1 32 32 H 1.08000 * 120.31451 * 0.02562 * 7 6 4 33 33 H 1.07997 * 119.22801 * 180.23618 * 8 7 6 34 34 H 1.07997 * 124.97489 * 180.02562 * 13 11 10 35 35 H 1.08999 * 111.00098 * 324.20980 * 16 2 1 36 36 H 1.08999 * 111.00620 * 88.02158 * 16 2 1 37 37 H 1.08994 * 110.50226 * 278.45550 * 17 16 2 38 38 H 1.09001 * 110.34274 * 156.05220 * 17 16 2 39 39 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 40 40 H 1.09003 * 109.87851 * 120.70448 * 27 18 17 41 41 H 1.08997 * 109.88162 * 241.71678 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3710 0.0000 4 6 1.7659 2.1969 1.0275 5 8 1.0840 1.8042 1.9541 6 6 2.2872 3.5795 1.0277 7 6 3.0773 4.0519 -0.0222 8 6 3.5435 5.3539 0.0121 9 7 3.2671 6.1587 1.0177 10 6 2.5292 5.7695 2.0421 11 7 2.0968 6.3877 3.1969 12 1 2.2859 7.3001 3.4663 13 6 1.3551 5.4807 3.8874 14 7 1.3050 4.3545 3.2342 15 6 2.0055 4.4631 2.0894 16 6 2.0791 -0.7975 -1.2123 17 6 3.4667 -1.2466 -0.6838 18 7 3.2445 -1.5493 0.7418 19 6 4.0044 -2.3941 1.5062 20 1 3.7613 -2.5459 2.5474 21 6 5.0868 -3.0554 0.9425 22 7 5.3833 -2.8701 -0.3264 23 14 6.1237 -4.2074 1.9853 24 1 7.2102 -4.7848 1.1539 25 1 6.7153 -3.4517 3.1185 26 1 5.2696 -5.3018 2.5124 27 6 2.0760 -0.7889 1.2087 28 1 -0.3634 0.4874 0.9047 29 1 -0.3633 0.5397 -0.8745 30 1 -0.3632 -1.0273 -0.0303 31 1 2.5902 1.6844 -0.7395 32 1 3.3194 3.4080 -0.8548 33 1 4.1512 5.7181 -0.8030 34 1 0.8768 5.6670 4.8376 35 1 1.4453 -1.6560 -1.4346 36 1 2.1845 -0.1556 -2.0869 37 1 4.1948 -0.4427 -0.7919 38 1 3.8033 -2.1382 -1.2129 39 1 6.1400 -3.3320 -0.7201 40 1 1.3129 -1.4730 1.5802 41 1 2.3735 -0.1007 1.9999 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046352939.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:40 Heat of formation + Delta-G solvation = 94.072804 kcal Electronic energy + Delta-G solvation = -26305.545915 eV Core-core repulsion = 22608.769384 eV Total energy + Delta-G solvation = -3696.776531 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.56252 -39.89958 -38.40912 -37.13900 -33.99742 -33.81584 -32.25137 -31.10689 -29.90044 -29.74475 -28.60513 -25.64862 -25.08478 -23.58709 -23.34301 -22.25477 -20.99906 -20.29771 -19.04829 -18.63535 -17.70074 -17.35172 -16.75675 -15.91504 -15.60524 -15.26258 -14.96731 -14.61256 -14.48888 -14.17911 -13.90296 -13.65078 -13.02895 -12.87786 -12.75991 -12.66035 -12.19281 -11.99131 -11.67465 -11.50298 -11.21816 -11.04431 -10.89522 -10.80458 -10.37359 -10.30944 -10.07451 -9.95959 -9.69374 -9.54021 -9.09962 -9.09002 -8.72375 -8.60232 -8.54544 -6.75706 -5.60329 -3.00387 0.27633 0.96520 2.30512 2.61378 3.07261 3.31142 3.45080 3.48553 3.50445 3.85273 3.92262 4.24089 4.51024 4.54797 4.61206 4.76840 4.92602 5.17931 5.33157 5.43917 5.52633 5.54834 5.61534 5.67801 5.78392 5.84455 6.07950 6.21599 6.27267 6.32507 6.40143 6.49426 6.56980 6.75519 6.84670 6.91306 7.20233 7.49230 7.56855 7.61408 7.68369 7.82895 7.90139 8.40341 8.56023 9.28413 9.89061 10.54055 11.43862 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016309 B = 0.003627 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.418796 B = 7718.725014 C = 8040.264768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.161 3.839 3 N -0.702 5.702 4 C 0.552 3.448 5 O -0.498 6.498 6 C -0.026 4.026 7 C -0.150 4.150 8 C 0.134 3.866 9 N -0.472 5.472 10 C 0.231 3.769 11 N -0.591 5.591 12 H 0.428 0.572 13 C 0.272 3.728 14 N -0.459 5.459 15 C 0.053 3.947 16 C -0.146 4.146 17 C 0.152 3.848 18 N -0.604 5.604 19 C -0.216 4.216 20 H 0.076 0.924 21 C -0.013 4.013 22 N -0.926 5.926 23 Si 0.914 3.086 24 H -0.290 1.290 25 H -0.287 1.287 26 H -0.285 1.285 27 C 0.136 3.864 28 H 0.071 0.929 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.395 0.605 32 H 0.150 0.850 33 H 0.173 0.827 34 H 0.226 0.774 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.010 0.990 38 H 0.109 0.891 39 H 0.251 0.749 40 H 0.031 0.969 41 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.370 19.551 -0.531 20.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.075 3.925 3 N -0.355 5.355 4 C 0.337 3.663 5 O -0.372 6.372 6 C -0.039 4.039 7 C -0.173 4.173 8 C -0.032 4.032 9 N -0.186 5.186 10 C -0.006 4.006 11 N -0.206 5.206 12 H 0.268 0.732 13 C -0.015 4.015 14 N -0.177 5.177 15 C -0.070 4.070 16 C -0.185 4.185 17 C 0.027 3.973 18 N -0.330 5.330 19 C -0.345 4.345 20 H 0.094 0.906 21 C -0.208 4.208 22 N -0.575 5.575 23 Si 0.744 3.256 24 H -0.216 1.216 25 H -0.213 1.213 26 H -0.212 1.212 27 C 0.010 3.990 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.230 0.770 32 H 0.168 0.832 33 H 0.190 0.810 34 H 0.243 0.757 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.028 0.972 38 H 0.126 0.874 39 H 0.062 0.938 40 H 0.049 0.951 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.838 19.143 0.432 20.690 hybrid contribution 1.179 0.102 0.165 1.195 sum -6.659 19.245 0.597 20.373 Atomic orbital electron populations 1.22038 0.94228 1.02167 1.02357 1.21355 0.92981 0.79982 0.98166 1.45887 1.53888 1.12792 1.22894 1.17835 0.81313 0.84107 0.83028 1.90818 1.36766 1.75590 1.34045 1.19850 0.97266 0.94089 0.92669 1.22242 0.98321 0.97770 0.99008 1.22499 0.96778 0.89395 0.94543 1.66196 1.13703 1.38403 1.00280 1.18971 0.99706 0.91481 0.90472 1.42912 1.44822 1.15762 1.17063 0.73176 1.25765 0.93480 0.83637 0.98618 1.70376 1.20484 1.21976 1.04831 1.19229 0.99997 0.92715 0.95105 1.23394 1.01291 0.98813 0.94978 1.21994 0.89296 1.00629 0.85333 1.44507 1.30718 1.50300 1.07502 1.19063 1.06112 1.16394 0.92891 0.90627 1.24737 0.98779 1.00788 0.96451 1.69758 1.30210 1.46622 1.10919 0.86155 0.79764 0.80643 0.78995 1.21609 1.21338 1.21178 1.21608 0.90301 0.93154 0.93979 0.90997 0.93142 0.91690 0.76989 0.83234 0.81005 0.75735 0.90419 0.91917 0.97196 0.87365 0.93817 0.95127 0.94709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 8.40 37.16 0.31 -2.11 16 2 C 0.16 2.94 0.81 -129.99 -0.10 2.83 16 3 N -0.70 -11.49 5.11 -46.87 -0.24 -11.73 16 4 C 0.55 9.85 7.01 -12.37 -0.09 9.76 16 5 O -0.50 -10.54 13.13 5.31 0.07 -10.47 16 6 C -0.03 -0.39 5.93 -104.45 -0.62 -1.01 16 7 C -0.15 -1.70 9.60 -39.02 -0.37 -2.08 16 8 C 0.13 1.36 11.14 -17.56 -0.20 1.17 16 9 N -0.47 -5.74 10.35 -12.30 -0.13 -5.87 16 10 C 0.23 2.96 8.46 -155.65 -1.32 1.64 16 11 N -0.59 -5.21 6.23 -13.21 -0.08 -5.29 16 12 H 0.43 2.12 8.96 -40.82 -0.37 1.75 16 13 C 0.27 2.56 12.97 -89.68 -1.16 1.39 16 14 N -0.46 -6.99 10.63 -11.88 -0.13 -7.11 16 15 C 0.05 0.82 6.85 -84.62 -0.58 0.24 16 16 C -0.15 -2.64 6.11 -24.46 -0.15 -2.79 16 17 C 0.15 3.62 5.89 -2.41 -0.01 3.60 16 18 N -0.60 -15.93 3.39 -169.93 -0.58 -16.51 16 19 C -0.22 -6.24 10.27 -15.06 -0.15 -6.39 16 20 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 21 C -0.01 -0.36 5.49 -17.43 -0.10 -0.46 16 22 N -0.93 -26.96 10.08 55.49 0.56 -26.40 16 23 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 C 0.14 3.14 6.12 -3.06 -0.02 3.12 16 28 H 0.07 1.28 6.43 -51.93 -0.33 0.95 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 1.01 8.13 -51.93 -0.42 0.58 16 31 H 0.40 5.33 6.62 -40.82 -0.27 5.06 16 32 H 0.15 1.27 6.53 -52.49 -0.34 0.93 16 33 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.23 0.88 8.06 -52.49 -0.42 0.45 16 35 H 0.08 1.38 8.04 -51.93 -0.42 0.97 16 36 H 0.06 0.94 8.05 -51.93 -0.42 0.52 16 37 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.11 2.89 5.86 -51.93 -0.30 2.59 16 39 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.03 0.72 7.82 -51.93 -0.41 0.31 16 41 H 0.03 0.89 6.49 -51.93 -0.34 0.55 16 LS Contribution 336.31 15.07 5.07 5.07 Total: -1.00 -37.95 336.31 -9.89 -47.84 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -4.85 Total: 3.98 kcal Atomic # 6 Polarization: 13.48 SS G_CDS: -4.56 Total: 8.92 kcal Atomic # 7 Polarization: -72.31 SS G_CDS: -0.59 Total: -72.90 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.07 Total: -10.47 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -37.95 -9.89 -47.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046352939.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.915 kcal (2) G-P(sol) polarization free energy of solvation -37.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds