Wall clock time and date at job start Tue Mar 31 2020 10:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 110.64173 * 2 1 4 4 C 1.34775 * 119.99924 * 61.68851 * 3 2 1 5 5 O 1.21584 * 120.00311 * 359.97438 * 4 3 2 6 6 C 1.47511 * 120.00112 * 180.02562 * 4 3 2 7 7 C 1.36882 * 120.60899 * 179.72153 * 6 4 3 8 8 C 1.40137 * 119.25416 * 179.76957 * 7 6 4 9 9 N 1.31146 * 120.46342 * 0.48979 * 8 7 6 10 10 C 1.33698 * 121.18570 * 359.76069 * 9 8 7 11 11 C 1.39062 * 132.55760 * 179.97438 * 10 9 8 12 12 C 1.38498 * 107.67024 * 180.02562 * 11 10 9 13 13 N 1.31520 * 109.03962 * 0.02562 * 12 11 10 14 14 N 1.37292 * 120.63830 * 0.02562 * 10 9 8 15 15 C 1.55160 * 110.72376 * 236.66273 * 2 1 3 16 16 C 1.54906 * 101.58165 * 206.13441 * 15 2 1 17 17 N 1.47750 * 104.84277 * 37.09540 * 16 15 2 18 18 C 1.36935 * 125.82555 * 155.82567 * 17 16 15 19 19 H 1.08008 * 119.99959 * 353.76620 * 18 17 16 20 20 C 1.38810 * 120.00531 * 173.76652 * 18 17 16 21 21 N 1.31615 * 119.99484 * 6.81553 * 20 18 17 22 22 Si 1.86796 * 120.00373 * 186.81551 * 20 18 17 23 23 H 1.48504 * 109.47241 * 94.98436 * 22 20 18 24 24 H 1.48502 * 109.47229 * 214.98375 * 22 20 18 25 25 H 1.48502 * 109.47085 * 334.98502 * 22 20 18 26 26 C 1.47019 * 108.52935 * 335.74724 * 17 16 15 27 27 H 1.08999 * 109.47096 * 298.31605 * 1 2 3 28 28 H 1.08999 * 109.46918 * 58.31116 * 1 2 3 29 29 H 1.09002 * 109.47061 * 178.31254 * 1 2 3 30 30 H 0.97003 * 120.00059 * 241.68583 * 3 2 1 31 31 H 1.07999 * 120.36988 * 359.97438 * 7 6 4 32 32 H 1.08003 * 119.76827 * 180.24910 * 8 7 6 33 33 H 1.08004 * 126.16102 * 0.02562 * 11 10 9 34 34 H 1.08003 * 125.47805 * 179.97438 * 12 11 10 35 35 H 1.09002 * 111.00117 * 324.20872 * 15 2 1 36 36 H 1.08998 * 111.00065 * 88.02197 * 15 2 1 37 37 H 1.09003 * 110.36472 * 155.84132 * 16 15 2 38 38 H 1.08995 * 110.37016 * 278.16894 * 16 15 2 39 39 H 0.97004 * 120.00190 * 179.97438 * 21 20 18 40 40 H 1.08997 * 109.88538 * 241.68903 * 26 17 16 41 41 H 1.09003 * 109.88431 * 120.67007 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3709 0.0000 4 6 1.7659 2.1967 1.0276 5 8 1.0839 1.8040 1.9544 6 6 2.2855 3.5773 1.0273 7 6 2.0035 4.4282 2.0618 8 6 2.5158 5.7323 2.0349 9 7 3.2492 6.1379 1.0261 10 6 3.5315 5.3236 0.0039 11 6 4.2684 5.4988 -1.1623 12 6 4.2268 4.3082 -1.8687 13 7 3.5101 3.4347 -1.1955 14 7 3.0575 4.0353 -0.0158 15 6 2.0790 -0.7975 -1.2124 16 6 3.4633 -1.2509 -0.6853 17 7 3.2438 -1.5521 0.7444 18 6 4.0004 -2.3980 1.5106 19 1 4.7795 -2.9898 1.0531 20 6 3.7662 -2.4950 2.8754 21 7 2.7339 -1.8789 3.4112 22 14 4.9159 -3.4998 3.9513 23 1 5.9407 -2.6070 4.5496 24 1 4.1364 -4.1534 5.0333 25 1 5.5846 -4.5380 3.1266 26 6 2.0760 -0.7891 1.2087 27 1 -0.3633 0.4875 0.9047 28 1 -0.3633 0.5398 -0.8745 29 1 -0.3633 -1.0272 -0.0303 30 1 2.5903 1.6844 -0.7396 31 1 1.3959 4.0972 2.8910 32 1 2.3019 6.4094 2.8487 33 1 4.7807 6.4008 -1.4630 34 1 4.7052 4.1267 -2.8198 35 1 1.4452 -1.6561 -1.4346 36 1 2.1844 -0.1555 -2.0869 37 1 3.7960 -2.1447 -1.2131 38 1 4.1932 -0.4492 -0.7976 39 1 2.5700 -1.9469 4.3649 40 1 2.3740 -0.0990 1.9980 41 1 1.3119 -1.4711 1.5818 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046371599.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:46 Heat of formation + Delta-G solvation = 127.874812 kcal Electronic energy + Delta-G solvation = -26899.819993 eV Core-core repulsion = 23204.509227 eV Total energy + Delta-G solvation = -3695.310766 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.50191 -39.88058 -38.27341 -37.25539 -34.31145 -33.87596 -31.90767 -31.19097 -30.16111 -29.29432 -28.23561 -25.93216 -25.65383 -23.79994 -23.49491 -22.49881 -20.82999 -20.27059 -19.27017 -18.31817 -17.54561 -17.11203 -16.68756 -16.32069 -15.75323 -15.43010 -14.70350 -14.59007 -14.25237 -13.91452 -13.81357 -13.68011 -13.35721 -13.11768 -12.84214 -12.62962 -12.30546 -12.01113 -11.71378 -11.55359 -11.38649 -11.24152 -10.95483 -10.78867 -10.54510 -10.40113 -10.36767 -10.05612 -9.98223 -9.72669 -9.64151 -9.55220 -8.59311 -8.54367 -8.14349 -6.78344 -5.66490 -3.00319 -0.00601 0.65583 1.75311 2.31532 2.90630 3.09126 3.42216 3.42401 3.47100 3.49459 3.62884 3.90428 4.41265 4.53064 4.68588 4.82387 5.05983 5.15231 5.20444 5.36896 5.37761 5.51560 5.57361 5.61837 5.69586 5.75565 5.99876 6.09323 6.13158 6.16951 6.24406 6.34258 6.50618 6.60355 6.64615 6.73041 6.94089 7.16115 7.33927 7.53668 7.71150 7.79811 7.95205 8.28660 8.40300 9.25069 9.85661 10.52600 11.44460 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.014798 B = 0.004380 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.647354 B = 6391.790602 C = 6719.437044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.136 3.864 3 N -0.686 5.686 4 C 0.553 3.447 5 O -0.498 6.498 6 C 0.154 3.846 7 C -0.161 4.161 8 C 0.180 3.820 9 N -0.455 5.455 10 C 0.256 3.744 11 C -0.260 4.260 12 C 0.094 3.906 13 N -0.317 5.317 14 N -0.301 5.301 15 C -0.132 4.132 16 C 0.132 3.868 17 N -0.607 5.607 18 C -0.232 4.232 19 H 0.078 0.922 20 C -0.006 4.006 21 N -0.913 5.913 22 Si 0.908 3.092 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.181 3.819 27 H 0.073 0.927 28 H 0.045 0.955 29 H 0.067 0.933 30 H 0.410 0.590 31 H 0.182 0.818 32 H 0.189 0.811 33 H 0.164 0.836 34 H 0.201 0.799 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.041 0.959 38 H 0.017 0.983 39 H 0.253 0.747 40 H 0.061 0.939 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.212 15.508 -9.110 18.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.051 3.949 3 N -0.341 5.341 4 C 0.335 3.665 5 O -0.372 6.372 6 C 0.036 3.964 7 C -0.186 4.186 8 C -0.004 4.004 9 N -0.166 5.166 10 C 0.028 3.972 11 C -0.291 4.291 12 C -0.082 4.082 13 N -0.143 5.143 14 N -0.075 5.075 15 C -0.171 4.171 16 C 0.006 3.994 17 N -0.334 5.334 18 C -0.360 4.360 19 H 0.095 0.905 20 C -0.203 4.203 21 N -0.560 5.560 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.206 1.206 26 C 0.056 3.944 27 H 0.092 0.908 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.251 0.749 31 H 0.199 0.801 32 H 0.205 0.795 33 H 0.181 0.819 34 H 0.218 0.782 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.060 0.940 38 H 0.035 0.965 39 H 0.063 0.937 40 H 0.079 0.921 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.672 14.658 -8.565 17.185 hybrid contribution 0.995 -0.261 0.347 1.085 sum -1.678 14.397 -8.218 16.662 Atomic orbital electron populations 1.21988 0.94027 1.02373 1.02079 1.21916 0.93541 0.80022 0.99443 1.46292 1.52379 1.12742 1.22672 1.17438 0.82067 0.82971 0.84061 1.90896 1.37680 1.74335 1.34312 1.21181 0.92279 0.96508 0.86455 1.22206 1.03281 0.93905 0.99163 1.23467 0.88656 0.93543 0.94763 1.67970 1.14866 1.33229 1.00583 1.20795 0.98469 0.81541 0.96418 1.20990 1.11575 1.01695 0.94798 1.23808 0.94682 0.90404 0.99327 1.77372 1.22346 1.20819 0.93729 1.47411 1.33475 1.11499 1.15140 1.23041 0.99017 0.99368 0.95657 1.21617 0.93435 0.97308 0.87067 1.44563 1.32384 1.51504 1.04924 1.19030 1.11741 1.16186 0.89078 0.90452 1.24845 0.98329 1.00458 0.96664 1.69984 1.27879 1.46956 1.11203 0.86154 0.80175 0.79288 0.80499 1.21747 1.21718 1.20641 1.21517 0.89276 0.93194 0.90409 0.90811 0.93599 0.91434 0.74924 0.80062 0.79450 0.81852 0.78226 0.89885 0.91621 0.94033 0.96518 0.93688 0.92091 0.92915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 8.40 37.16 0.31 -2.24 16 2 C 0.14 2.67 0.81 -129.98 -0.11 2.57 16 3 N -0.69 -12.68 5.14 -46.94 -0.24 -12.92 16 4 C 0.55 10.32 7.01 -12.48 -0.09 10.23 16 5 O -0.50 -10.48 13.30 5.29 0.07 -10.41 16 6 C 0.15 2.40 6.82 -81.98 -0.56 1.84 16 7 C -0.16 -1.93 9.61 -39.36 -0.38 -2.31 16 8 C 0.18 1.77 11.26 -17.13 -0.19 1.58 16 9 N -0.46 -5.65 10.44 -12.24 -0.13 -5.78 16 10 C 0.26 3.52 7.93 -155.57 -1.23 2.29 16 11 C -0.26 -2.96 10.91 -39.18 -0.43 -3.39 16 12 C 0.09 1.03 11.93 -17.59 -0.21 0.82 16 13 N -0.32 -4.56 9.92 30.46 0.30 -4.26 16 14 N -0.30 -4.55 3.94 -8.87 -0.03 -4.59 16 15 C -0.13 -2.32 6.09 -24.58 -0.15 -2.47 16 16 C 0.13 2.79 7.23 -2.35 -0.02 2.77 16 17 N -0.61 -15.99 3.41 -169.81 -0.58 -16.57 16 18 C -0.23 -6.66 10.28 -15.06 -0.15 -6.82 16 19 H 0.08 2.14 7.84 -52.48 -0.41 1.73 16 20 C -0.01 -0.18 5.48 -17.43 -0.10 -0.27 16 21 N -0.91 -27.83 10.36 55.49 0.57 -27.25 16 22 Si 0.91 22.69 29.56 -169.99 -5.02 17.67 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 C 0.18 4.60 4.26 -3.06 -0.01 4.59 16 27 H 0.07 1.40 6.43 -51.93 -0.33 1.06 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.07 1.13 8.13 -51.93 -0.42 0.71 16 30 H 0.41 7.08 5.51 -40.82 -0.22 6.86 16 31 H 0.18 1.89 7.65 -52.49 -0.40 1.49 16 32 H 0.19 0.95 8.06 -52.48 -0.42 0.53 16 33 H 0.16 1.43 8.06 -52.48 -0.42 1.01 16 34 H 0.20 1.30 8.06 -52.48 -0.42 0.87 16 35 H 0.08 1.39 8.04 -51.93 -0.42 0.97 16 36 H 0.07 0.97 8.05 -51.93 -0.42 0.55 16 37 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.06 1.77 5.70 -51.93 -0.30 1.48 16 41 H 0.05 1.49 7.22 -51.93 -0.37 1.11 16 LS Contribution 336.89 15.07 5.08 5.08 Total: -1.00 -35.58 336.89 -8.27 -43.85 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -4.97 Total: 5.99 kcal Atomic # 6 Polarization: 12.51 SS G_CDS: -3.31 Total: 9.19 kcal Atomic # 7 Polarization: -71.26 SS G_CDS: -0.11 Total: -71.37 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.07 Total: -10.41 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.58 -8.27 -43.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046371599.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.722 kcal (2) G-P(sol) polarization free energy of solvation -35.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds