Wall clock time and date at job start Tue Mar 31 2020 10:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46502 * 110.88578 * 2 1 4 4 C 1.34773 * 120.00128 * 62.42452 * 3 2 1 5 5 O 1.21687 * 120.00138 * 359.97438 * 4 3 2 6 6 C 1.46818 * 119.99686 * 180.02562 * 4 3 2 7 7 C 1.40411 * 126.54211 * 359.97438 * 6 4 3 8 8 N 1.30972 * 108.76342 * 180.02562 * 7 6 4 9 9 N 1.39714 * 109.49050 * 0.02562 * 8 7 6 10 10 C 1.36356 * 133.19640 * 179.97438 * 9 8 7 11 11 C 1.35290 * 119.80862 * 180.02562 * 10 9 8 12 12 N 1.33242 * 121.27605 * 0.02562 * 11 10 9 13 13 C 1.31408 * 121.07645 * 359.97438 * 12 11 10 14 14 C 1.36816 * 107.96682 * 359.97438 * 9 8 7 15 15 C 1.55150 * 111.03881 * 236.08852 * 2 1 3 16 16 C 1.54322 * 102.94173 * 206.40924 * 15 2 1 17 17 N 1.47019 * 107.27596 * 22.19696 * 16 15 2 18 18 C 1.36931 * 125.65678 * 181.02534 * 17 16 15 19 19 H 1.07995 * 120.00858 * 180.02562 * 18 17 16 20 20 C 1.38820 * 119.99610 * 0.03777 * 18 17 16 21 21 N 1.31615 * 119.99941 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99764 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47555 * 60.00294 * 22 20 18 24 24 H 1.48506 * 109.47111 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47232 * 299.99435 * 22 20 18 26 26 C 1.47427 * 108.69929 * 1.05708 * 17 16 15 27 27 H 1.08998 * 109.46840 * 60.70788 * 1 2 3 28 28 H 1.08998 * 109.46738 * 180.70577 * 1 2 3 29 29 H 1.08995 * 109.46903 * 300.70675 * 1 2 3 30 30 H 0.97000 * 119.99349 * 242.42427 * 3 2 1 31 31 H 1.07994 * 125.62052 * 0.02562 * 7 6 4 32 32 H 1.08001 * 120.09402 * 0.02578 * 10 9 8 33 33 H 1.08003 * 119.36060 * 180.02562 * 11 10 9 34 34 H 1.08003 * 120.18268 * 180.27228 * 13 12 11 35 35 H 1.08991 * 110.72405 * 324.77484 * 15 2 1 36 36 H 1.09004 * 110.71515 * 88.05025 * 15 2 1 37 37 H 1.09002 * 109.88596 * 262.77554 * 16 15 2 38 38 H 1.09004 * 109.88124 * 141.61342 * 16 15 2 39 39 H 0.97000 * 120.00250 * 179.97438 * 21 20 18 40 40 H 1.09002 * 110.36877 * 217.03425 * 26 17 16 41 41 H 1.08999 * 110.46418 * 94.75772 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3688 0.0000 4 6 1.7878 2.1910 1.0346 5 8 1.1147 1.7967 1.9685 6 6 2.3108 3.5629 1.0342 7 6 3.0967 4.1577 0.0342 8 7 3.3684 5.3890 0.3886 9 7 2.7798 5.6583 1.6267 10 6 2.7540 6.7616 2.4276 11 6 2.0842 6.7242 3.6025 12 7 1.4441 5.6250 3.9992 13 6 1.4413 4.5380 3.2609 14 6 2.1211 4.5308 2.0351 15 6 2.0870 -0.8079 -1.2018 16 6 3.4684 -1.2732 -0.6949 17 7 3.4276 -1.2419 0.7744 18 6 4.4642 -1.5647 1.6087 19 1 4.3331 -1.5098 2.6793 20 6 5.6839 -1.9624 1.0784 21 7 5.8437 -2.0297 -0.2263 22 14 7.0979 -2.4035 2.2166 23 1 6.6977 -3.5387 3.0864 24 1 8.2814 -2.7921 1.4081 25 1 7.4391 -1.2298 3.0600 26 6 2.0853 -0.8061 1.2008 27 1 -0.3633 0.5028 -0.8963 28 1 -0.3633 -1.0276 0.0127 29 1 -0.3633 0.5248 0.8835 30 1 2.5885 1.6832 -0.7447 31 1 3.4233 3.6789 -0.8771 32 1 3.2667 7.6626 2.1249 33 1 2.0681 7.6023 4.2311 34 1 0.9140 3.6564 3.5944 35 1 1.4483 -1.6635 -1.4206 36 1 2.1931 -0.1700 -2.0792 37 1 4.2434 -0.5985 -1.0587 38 1 3.6666 -2.2885 -1.0387 39 1 6.6961 -2.3072 -0.5969 40 1 2.1553 -0.1712 2.0840 41 1 1.4511 -1.6690 1.4041 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046377463.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:21 Heat of formation + Delta-G solvation = 118.674656 kcal Electronic energy + Delta-G solvation = -26419.181744 eV Core-core repulsion = 22723.472029 eV Total energy + Delta-G solvation = -3695.709715 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.66198 -39.69665 -38.47963 -37.10417 -33.92334 -33.81975 -31.94187 -31.50718 -30.22921 -29.13166 -28.57917 -25.63274 -25.03180 -24.36943 -23.44537 -22.70247 -20.72798 -20.09662 -19.09353 -18.54277 -17.52071 -17.14075 -16.44941 -16.27995 -15.78669 -15.37155 -15.20044 -14.59414 -14.45129 -14.05975 -13.71992 -13.61837 -13.32073 -13.18679 -13.08367 -12.71210 -12.03328 -11.88816 -11.78028 -11.62363 -11.39525 -11.06285 -10.86004 -10.83425 -10.36208 -10.32526 -10.23234 -10.07802 -10.04549 -9.96408 -9.61381 -9.31349 -8.61564 -8.51742 -8.05133 -6.75457 -5.67017 -2.98248 0.16829 0.60174 1.69135 1.99793 3.05048 3.42834 3.44146 3.47774 3.49110 3.70462 3.91143 3.94696 4.03795 4.54456 4.56147 4.70007 4.84300 5.07254 5.14820 5.18529 5.39040 5.44435 5.53429 5.66021 5.76327 5.90604 6.00729 6.06262 6.17525 6.19565 6.22228 6.39057 6.43594 6.58284 6.72842 6.88488 7.04873 7.18786 7.34508 7.58465 7.60179 7.83733 7.95537 8.30506 8.63226 9.27937 9.88120 10.54212 11.45048 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013572 B = 0.004189 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.559872 B = 6683.073688 C = 7588.848422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.159 3.841 3 N -0.695 5.695 4 C 0.600 3.400 5 O -0.546 6.546 6 C -0.261 4.261 7 C 0.115 3.885 8 N -0.304 5.304 9 N -0.250 5.250 10 C 0.061 3.939 11 C 0.025 3.975 12 N -0.449 5.449 13 C 0.173 3.827 14 C 0.091 3.909 15 C -0.147 4.147 16 C 0.178 3.822 17 N -0.603 5.603 18 C -0.220 4.220 19 H 0.075 0.925 20 C -0.009 4.009 21 N -0.925 5.925 22 Si 0.909 3.091 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.287 1.287 26 C 0.131 3.869 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.395 0.605 31 H 0.205 0.795 32 H 0.180 0.820 33 H 0.185 0.815 34 H 0.198 0.802 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.045 0.955 38 H 0.043 0.957 39 H 0.251 0.749 40 H 0.057 0.943 41 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.513 16.189 -0.420 18.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.072 3.928 3 N -0.344 5.344 4 C 0.387 3.613 5 O -0.425 6.425 6 C -0.279 4.279 7 C -0.063 4.063 8 N -0.128 5.128 9 N -0.018 5.018 10 C -0.067 4.067 11 C -0.117 4.117 12 N -0.160 5.160 13 C -0.006 4.006 14 C -0.032 4.032 15 C -0.185 4.185 16 C 0.053 3.947 17 N -0.329 5.329 18 C -0.348 4.348 19 H 0.093 0.907 20 C -0.205 4.205 21 N -0.573 5.573 22 Si 0.740 3.260 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.214 1.214 26 C 0.004 3.996 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.229 0.771 31 H 0.221 0.779 32 H 0.197 0.803 33 H 0.202 0.798 34 H 0.215 0.785 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -9.471 17.085 0.582 19.543 hybrid contribution 1.426 -0.732 -0.526 1.688 sum -8.045 16.353 0.056 18.225 Atomic orbital electron populations 1.21991 0.94335 1.02135 1.02289 1.21480 0.92514 0.80473 0.98304 1.45516 1.54142 1.12653 1.22100 1.16714 0.79523 0.82757 0.82334 1.90717 1.40328 1.76373 1.35066 1.19973 1.13638 0.96901 0.97413 1.24260 0.92739 0.90478 0.98840 1.77676 1.22851 1.18420 0.93838 1.46207 1.31719 1.09297 1.14576 1.22617 1.02005 0.90740 0.91372 1.22423 0.96827 0.98438 0.93973 1.68285 1.16385 0.99147 1.32183 1.23392 0.93323 0.97363 0.86518 1.20383 0.97477 0.88128 0.97243 1.23229 1.00517 0.98908 0.95878 1.21146 0.89955 0.99863 0.83748 1.44426 1.07808 1.78895 1.01770 1.19013 0.89379 1.37477 0.88972 0.90680 1.24736 0.97680 1.02115 0.95964 1.69930 1.24108 1.54159 1.09145 0.86237 0.81969 0.78273 0.79542 1.21197 1.21661 1.21382 1.21901 0.87450 0.94880 0.95349 0.93178 0.91867 0.90915 0.77068 0.77884 0.80259 0.79821 0.78541 0.90850 0.91785 0.93694 0.93901 0.93885 0.92461 0.95758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 8.62 37.16 0.32 -1.87 16 2 C 0.16 2.73 0.82 -129.67 -0.11 2.62 16 3 N -0.70 -11.01 5.16 -46.86 -0.24 -11.25 16 4 C 0.60 9.94 7.18 -12.79 -0.09 9.85 16 5 O -0.55 -10.16 12.58 5.20 0.07 -10.10 16 6 C -0.26 -3.83 6.16 -104.75 -0.65 -4.47 16 7 C 0.12 1.47 11.44 -17.10 -0.20 1.27 16 8 N -0.30 -4.07 12.60 30.76 0.39 -3.69 16 9 N -0.25 -3.17 3.91 -10.50 -0.04 -3.21 16 10 C 0.06 0.55 11.24 -16.59 -0.19 0.36 16 11 C 0.03 0.21 11.07 -17.99 -0.20 0.01 16 12 N -0.45 -5.17 10.44 -13.26 -0.14 -5.31 16 13 C 0.17 2.23 10.98 -17.01 -0.19 2.04 16 14 C 0.09 1.26 6.77 -84.06 -0.57 0.69 16 15 C -0.15 -2.52 5.99 -24.90 -0.15 -2.67 16 16 C 0.18 4.13 5.36 -3.07 -0.02 4.11 16 17 N -0.60 -15.34 3.39 -170.07 -0.58 -15.91 16 18 C -0.22 -6.23 10.28 -15.06 -0.15 -6.38 16 19 H 0.08 2.11 7.83 -52.49 -0.41 1.69 16 20 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 21 N -0.93 -26.90 10.31 55.49 0.57 -26.33 16 22 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 C 0.13 2.83 6.11 -2.52 -0.02 2.82 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 29 H 0.07 1.16 6.45 -51.93 -0.33 0.82 16 30 H 0.40 5.40 7.41 -40.82 -0.30 5.10 16 31 H 0.20 1.90 7.46 -52.49 -0.39 1.51 16 32 H 0.18 0.95 8.06 -52.49 -0.42 0.53 16 33 H 0.18 0.81 8.06 -52.48 -0.42 0.39 16 34 H 0.20 2.48 7.20 -52.48 -0.38 2.11 16 35 H 0.07 1.18 8.04 -51.93 -0.42 0.76 16 36 H 0.06 0.93 8.05 -51.93 -0.42 0.52 16 37 H 0.04 1.14 7.38 -51.93 -0.38 0.75 16 38 H 0.04 1.12 7.51 -51.93 -0.39 0.73 16 39 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.06 1.34 6.31 -51.93 -0.33 1.01 16 41 H 0.02 0.53 8.03 -51.93 -0.42 0.12 16 LS Contribution 339.14 15.07 5.11 5.11 Total: -1.00 -34.55 339.14 -7.17 -41.73 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -5.00 Total: 3.45 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: -2.29 Total: 8.03 kcal Atomic # 7 Polarization: -65.67 SS G_CDS: -0.04 Total: -65.70 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.07 Total: -10.10 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.55 -7.17 -41.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046377463.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.403 kcal (2) G-P(sol) polarization free energy of solvation -34.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds