Wall clock time and date at job start Tue Mar 31 2020 10:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46502 * 110.88578 * 2 1 4 4 C 1.34773 * 120.00128 * 62.42452 * 3 2 1 5 5 O 1.21687 * 120.00138 * 359.97438 * 4 3 2 6 6 C 1.46818 * 119.99686 * 180.02562 * 4 3 2 7 7 C 1.40411 * 126.54211 * 359.97438 * 6 4 3 8 8 N 1.30972 * 108.76342 * 180.02562 * 7 6 4 9 9 N 1.39714 * 109.49050 * 0.02562 * 8 7 6 10 10 C 1.36356 * 133.19640 * 179.97438 * 9 8 7 11 11 C 1.35290 * 119.80862 * 180.02562 * 10 9 8 12 12 N 1.33242 * 121.27605 * 0.02562 * 11 10 9 13 13 C 1.31408 * 121.07645 * 359.97438 * 12 11 10 14 14 C 1.36816 * 107.96682 * 359.97438 * 9 8 7 15 15 C 1.55150 * 111.03881 * 236.08852 * 2 1 3 16 16 C 1.54322 * 102.94173 * 206.40924 * 15 2 1 17 17 N 1.47019 * 107.27596 * 22.19696 * 16 15 2 18 18 C 1.36931 * 125.65678 * 181.02534 * 17 16 15 19 19 H 1.07995 * 120.00858 * 180.02562 * 18 17 16 20 20 C 1.38820 * 119.99610 * 0.03777 * 18 17 16 21 21 N 1.31615 * 119.99941 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99764 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47555 * 60.00294 * 22 20 18 24 24 H 1.48506 * 109.47111 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47232 * 299.99435 * 22 20 18 26 26 C 1.47427 * 108.69929 * 1.05708 * 17 16 15 27 27 H 1.08998 * 109.46840 * 60.70788 * 1 2 3 28 28 H 1.08998 * 109.46738 * 180.70577 * 1 2 3 29 29 H 1.08995 * 109.46903 * 300.70675 * 1 2 3 30 30 H 0.97000 * 119.99349 * 242.42427 * 3 2 1 31 31 H 1.07994 * 125.62052 * 0.02562 * 7 6 4 32 32 H 1.08001 * 120.09402 * 0.02578 * 10 9 8 33 33 H 1.08003 * 119.36060 * 180.02562 * 11 10 9 34 34 H 1.08003 * 120.18268 * 180.27228 * 13 12 11 35 35 H 1.08991 * 110.72405 * 324.77484 * 15 2 1 36 36 H 1.09004 * 110.71515 * 88.05025 * 15 2 1 37 37 H 1.09002 * 109.88596 * 262.77554 * 16 15 2 38 38 H 1.09004 * 109.88124 * 141.61342 * 16 15 2 39 39 H 0.97000 * 120.00250 * 179.97438 * 21 20 18 40 40 H 1.09002 * 110.36877 * 217.03425 * 26 17 16 41 41 H 1.08999 * 110.46418 * 94.75772 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3688 0.0000 4 6 1.7878 2.1910 1.0346 5 8 1.1147 1.7967 1.9685 6 6 2.3108 3.5629 1.0342 7 6 3.0967 4.1577 0.0342 8 7 3.3684 5.3890 0.3886 9 7 2.7798 5.6583 1.6267 10 6 2.7540 6.7616 2.4276 11 6 2.0842 6.7242 3.6025 12 7 1.4441 5.6250 3.9992 13 6 1.4413 4.5380 3.2609 14 6 2.1211 4.5308 2.0351 15 6 2.0870 -0.8079 -1.2018 16 6 3.4684 -1.2732 -0.6949 17 7 3.4276 -1.2419 0.7744 18 6 4.4642 -1.5647 1.6087 19 1 4.3331 -1.5098 2.6793 20 6 5.6839 -1.9624 1.0784 21 7 5.8437 -2.0297 -0.2263 22 14 7.0979 -2.4035 2.2166 23 1 6.6977 -3.5387 3.0864 24 1 8.2814 -2.7921 1.4081 25 1 7.4391 -1.2298 3.0600 26 6 2.0853 -0.8061 1.2008 27 1 -0.3633 0.5028 -0.8963 28 1 -0.3633 -1.0276 0.0127 29 1 -0.3633 0.5248 0.8835 30 1 2.5885 1.6832 -0.7447 31 1 3.4233 3.6789 -0.8771 32 1 3.2667 7.6626 2.1249 33 1 2.0681 7.6023 4.2311 34 1 0.9140 3.6564 3.5944 35 1 1.4483 -1.6635 -1.4206 36 1 2.1931 -0.1700 -2.0792 37 1 4.2434 -0.5985 -1.0587 38 1 3.6666 -2.2885 -1.0387 39 1 6.6961 -2.3072 -0.5969 40 1 2.1553 -0.1712 2.0840 41 1 1.4511 -1.6690 1.4041 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046377463.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:20 Heat of formation + Delta-G solvation = 93.781138 kcal Electronic energy + Delta-G solvation = -26420.261208 eV Core-core repulsion = 22723.472029 eV Total energy + Delta-G solvation = -3696.789179 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.59641 -41.03469 -39.43821 -38.60619 -35.61843 -34.78065 -33.59607 -32.44960 -31.82274 -30.46688 -29.93573 -27.46534 -25.93435 -25.64090 -24.92917 -23.70527 -22.24872 -21.59925 -20.43201 -19.60714 -18.88391 -18.37028 -17.80222 -17.24208 -17.02730 -16.66234 -16.45470 -16.10115 -15.85618 -15.52072 -15.31387 -14.81274 -14.53338 -14.13057 -14.05596 -13.99973 -13.81550 -13.48356 -13.35535 -13.02845 -12.81663 -12.72089 -12.42623 -12.10518 -12.03198 -11.96931 -11.91448 -11.65592 -11.47960 -11.10656 -10.98691 -10.68374 -10.65079 -9.92869 -8.99886 -8.81177 -7.83566 -5.16114 -0.72860 -0.30306 0.82314 0.97304 1.43284 1.45514 1.51927 2.13363 2.27717 2.49364 2.55953 2.94211 3.12284 3.23970 3.34511 3.61869 3.68045 3.76962 3.88661 4.02585 4.11975 4.25766 4.27143 4.37181 4.49905 4.70395 4.76853 4.89199 4.95109 5.00308 5.02736 5.08764 5.11443 5.15916 5.35645 5.43461 5.46057 5.70610 5.76150 5.83623 6.09915 6.23286 6.48829 6.73290 7.14847 7.39869 7.81322 8.45361 9.25974 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013572 B = 0.004189 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.559872 B = 6683.073688 C = 7588.848422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.170 3.830 3 N -0.694 5.694 4 C 0.597 3.403 5 O -0.575 6.575 6 C -0.296 4.296 7 C 0.124 3.876 8 N -0.322 5.322 9 N -0.252 5.252 10 C 0.067 3.933 11 C 0.031 3.969 12 N -0.451 5.451 13 C 0.147 3.853 14 C 0.082 3.918 15 C -0.128 4.128 16 C 0.185 3.815 17 N -0.621 5.621 18 C -0.240 4.240 19 H 0.066 0.934 20 C -0.057 4.057 21 N -0.944 5.944 22 Si 0.970 3.030 23 H -0.280 1.280 24 H -0.289 1.289 25 H -0.284 1.284 26 C 0.127 3.873 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.406 0.594 31 H 0.230 0.770 32 H 0.222 0.778 33 H 0.232 0.768 34 H 0.187 0.813 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.018 0.982 38 H 0.007 0.993 39 H 0.247 0.753 40 H 0.033 0.967 41 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.821 18.519 -0.779 20.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.083 3.917 3 N -0.343 5.343 4 C 0.386 3.614 5 O -0.456 6.456 6 C -0.314 4.314 7 C -0.054 4.054 8 N -0.145 5.145 9 N -0.019 5.019 10 C -0.061 4.061 11 C -0.112 4.112 12 N -0.162 5.162 13 C -0.031 4.031 14 C -0.041 4.041 15 C -0.166 4.166 16 C 0.060 3.940 17 N -0.347 5.347 18 C -0.369 4.369 19 H 0.084 0.916 20 C -0.251 4.251 21 N -0.593 5.593 22 Si 0.798 3.202 23 H -0.206 1.206 24 H -0.214 1.214 25 H -0.211 1.211 26 C 0.001 3.999 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.242 0.758 31 H 0.246 0.754 32 H 0.239 0.761 33 H 0.248 0.752 34 H 0.203 0.797 35 H 0.110 0.890 36 H 0.118 0.882 37 H 0.037 0.963 38 H 0.025 0.975 39 H 0.056 0.944 40 H 0.051 0.949 41 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -9.802 19.407 0.204 21.743 hybrid contribution 1.526 -1.284 -0.263 2.012 sum -8.275 18.123 -0.059 19.923 Atomic orbital electron populations 1.21912 0.91872 1.03039 1.02936 1.21334 0.94098 0.80589 0.95670 1.45460 1.54368 1.11981 1.22529 1.17001 0.79006 0.83521 0.81852 1.90692 1.41725 1.77136 1.36076 1.19823 1.16092 0.96385 0.99115 1.24650 0.91500 0.90157 0.99111 1.77633 1.23770 1.18695 0.94404 1.46535 1.30949 1.09804 1.14609 1.23526 1.01085 0.90877 0.90662 1.23259 0.95123 0.98576 0.94240 1.68281 1.16253 0.99582 1.32112 1.23208 0.94885 0.97981 0.86987 1.20492 0.97590 0.88674 0.97382 1.23104 0.96736 1.00048 0.96738 1.20949 0.93031 0.97362 0.82636 1.44676 1.08526 1.78824 1.02669 1.19267 0.90750 1.37660 0.89269 0.91559 1.25456 0.99772 1.02419 0.97419 1.70126 1.24197 1.54647 1.10333 0.85292 0.79023 0.77993 0.77857 1.20586 1.21437 1.21100 1.22011 0.86119 0.95054 0.96687 0.90458 0.90781 0.92363 0.75791 0.75357 0.76101 0.75205 0.79652 0.89033 0.88226 0.96331 0.97484 0.94374 0.94855 0.95853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 8.62 71.98 0.62 -3.24 16 2 C 0.17 5.72 0.82 5.00 0.00 5.72 16 3 N -0.69 -21.71 5.16 -420.40 -2.17 -23.89 16 4 C 0.60 20.21 7.18 86.49 0.62 20.83 16 5 O -0.57 -22.33 12.58 -4.31 -0.05 -22.38 16 6 C -0.30 -8.76 6.16 -19.95 -0.12 -8.89 16 7 C 0.12 3.06 11.44 85.35 0.98 4.03 16 8 N -0.32 -8.15 12.60 -56.60 -0.71 -8.86 16 9 N -0.25 -5.98 3.91 -187.15 -0.73 -6.71 16 10 C 0.07 0.98 11.24 83.31 0.94 1.92 16 11 C 0.03 0.42 11.07 83.80 0.93 1.34 16 12 N -0.45 -9.78 10.44 -195.86 -2.05 -11.82 16 13 C 0.15 3.83 10.98 85.22 0.94 4.77 16 14 C 0.08 2.29 6.77 39.39 0.27 2.56 16 15 C -0.13 -4.19 5.99 31.78 0.19 -4.00 16 16 C 0.18 8.74 5.36 86.73 0.47 9.21 16 17 N -0.62 -32.52 3.39 -691.97 -2.35 -34.87 16 18 C -0.24 -14.04 10.28 84.04 0.86 -13.17 16 19 H 0.07 3.87 7.83 -2.91 -0.02 3.84 16 20 C -0.06 -3.31 5.49 84.86 0.47 -2.85 16 21 N -0.94 -56.20 10.31 21.65 0.22 -55.98 16 22 Si 0.97 47.05 29.55 68.60 2.03 49.08 16 23 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 24 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 25 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 26 C 0.13 5.65 6.11 86.86 0.53 6.18 16 27 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.07 1.89 8.13 -2.39 -0.02 1.87 16 29 H 0.06 1.82 6.45 -2.39 -0.02 1.80 16 30 H 0.41 10.69 7.41 -92.71 -0.69 10.01 16 31 H 0.23 3.98 7.46 -2.91 -0.02 3.95 16 32 H 0.22 1.26 8.06 -2.91 -0.02 1.24 16 33 H 0.23 0.86 8.06 -2.91 -0.02 0.84 16 34 H 0.19 5.09 7.20 -2.91 -0.02 5.07 16 35 H 0.09 2.72 8.04 -2.39 -0.02 2.70 16 36 H 0.10 2.60 8.05 -2.39 -0.02 2.58 16 37 H 0.02 0.96 7.38 -2.39 -0.02 0.94 16 38 H 0.01 0.37 7.51 -2.38 -0.02 0.36 16 39 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 40 H 0.03 1.63 6.31 -2.39 -0.02 1.61 16 41 H 0.02 1.04 8.03 -2.39 -0.02 1.02 16 Total: -1.00 -78.64 339.14 2.26 -76.39 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.39 Total: 14.63 kcal Atomic # 6 Polarization: 16.74 SS G_CDS: 7.68 Total: 24.42 kcal Atomic # 7 Polarization: -134.35 SS G_CDS: -7.79 Total: -142.14 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.05 Total: -22.38 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -78.64 2.26 -76.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046377463.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.168 kcal (2) G-P(sol) polarization free energy of solvation -78.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds