Wall clock time and date at job start Tue Mar 31 2020 10:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46507 * 110.77772 * 2 1 4 4 C 1.34781 * 119.99481 * 61.78675 * 3 2 1 5 5 O 1.21537 * 120.00349 * 359.97438 * 4 3 2 6 6 C 1.47973 * 119.99349 * 180.02562 * 4 3 2 7 7 C 1.39729 * 119.42507 * 179.73093 * 6 4 3 8 8 C 1.36999 * 119.60008 * 179.70531 * 7 6 4 9 9 C 1.39894 * 118.35685 * 0.56431 * 8 7 6 10 10 N 1.35433 * 133.81558 * 179.74419 * 9 8 7 11 11 C 1.30209 * 109.58081 * 179.97438 * 10 9 8 12 12 N 1.35991 * 110.18030 * 359.97438 * 11 10 9 13 13 H 0.97002 * 126.29451 * 180.02562 * 12 11 10 14 14 C 1.37946 * 107.41472 * 0.02562 * 12 11 10 15 15 N 1.31885 * 133.82637 * 180.02562 * 14 12 11 16 16 C 1.55156 * 110.72288 * 236.76622 * 2 1 3 17 17 C 1.55130 * 101.48388 * 205.96862 * 16 2 1 18 18 N 1.47422 * 104.72242 * 37.29240 * 17 16 2 19 19 C 1.36935 * 125.64518 * 155.81677 * 18 17 16 20 20 H 1.08005 * 119.99877 * 179.68486 * 19 18 17 21 21 C 1.38811 * 120.00369 * 359.42000 * 19 18 17 22 22 N 1.31617 * 119.99773 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00451 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47045 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47426 * 119.99572 * 23 21 19 26 26 H 1.48501 * 109.46833 * 239.99815 * 23 21 19 27 27 C 1.47016 * 108.70314 * 335.55143 * 18 17 16 28 28 H 1.09001 * 109.47013 * 298.21083 * 1 2 3 29 29 H 1.08994 * 109.46915 * 58.21520 * 1 2 3 30 30 H 1.08996 * 109.46861 * 178.21363 * 1 2 3 31 31 H 0.96994 * 120.00375 * 241.78496 * 3 2 1 32 32 H 1.07998 * 120.20360 * 359.97438 * 7 6 4 33 33 H 1.07992 * 120.82058 * 180.28041 * 8 7 6 34 34 H 1.08005 * 124.91116 * 180.02562 * 11 10 9 35 35 H 1.09006 * 110.99969 * 324.20530 * 16 2 1 36 36 H 1.08998 * 111.00492 * 88.01513 * 16 2 1 37 37 H 1.09000 * 110.49697 * 278.45056 * 17 16 2 38 38 H 1.09001 * 110.34287 * 156.05818 * 17 16 2 39 39 H 0.97004 * 120.00382 * 180.02562 * 22 21 19 40 40 H 1.09003 * 109.88086 * 120.70618 * 27 18 17 41 41 H 1.09003 * 109.88164 * 241.71479 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0498 1.3698 0.0000 4 6 1.7728 2.1955 1.0286 5 8 1.0917 1.8040 1.9559 6 6 2.2973 3.5792 1.0283 7 6 1.9982 4.4269 2.0980 8 6 2.4869 5.7068 2.1044 9 6 3.2666 6.1256 1.0210 10 7 3.8878 7.2873 0.7064 11 6 4.4960 7.1608 -0.4380 12 7 4.3063 5.9090 -0.9343 13 1 4.6557 5.5640 -1.7709 14 6 3.5257 5.2200 -0.0294 15 7 3.0391 3.9949 0.0101 16 6 2.0791 -0.7953 -1.2138 17 6 3.4667 -1.2454 -0.6861 18 7 3.2446 -1.5506 0.7390 19 6 4.0044 -2.3968 1.5017 20 1 3.7614 -2.5504 2.5428 21 6 5.0835 -3.0615 0.9355 22 7 5.3760 -2.8788 -0.3347 23 14 6.1195 -4.2164 1.9758 24 1 5.5860 -4.2477 3.3613 25 1 6.0718 -5.5825 1.3956 26 1 7.5247 -3.7367 1.9976 27 6 2.0761 -0.7911 1.2072 28 1 -0.3633 0.4858 0.9056 29 1 -0.3633 0.5413 -0.8735 30 1 -0.3633 -1.0271 -0.0320 31 1 2.5931 1.6824 -0.7402 32 1 1.3891 4.0741 2.9170 33 1 2.2718 6.3771 2.9232 34 1 5.0690 7.9376 -0.9225 35 1 1.4453 -1.6535 -1.4375 36 1 2.1844 -0.1518 -2.0872 37 1 4.1948 -0.4413 -0.7928 38 1 3.8033 -2.1360 -1.2168 39 1 6.1299 -3.3435 -0.7305 40 1 1.3130 -1.4758 1.5775 41 1 2.3736 -0.1043 1.9996 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046416587.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:17 Heat of formation + Delta-G solvation = 88.068277 kcal Electronic energy + Delta-G solvation = -26070.659423 eV Core-core repulsion = 22373.622516 eV Total energy + Delta-G solvation = -3697.036907 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.60313 -40.12034 -38.40655 -37.01298 -34.20124 -33.84856 -32.05198 -31.36926 -30.39727 -29.52953 -28.61608 -25.67865 -25.09937 -23.78605 -23.32774 -21.91113 -21.17671 -20.31014 -19.13902 -18.69576 -18.06348 -17.37724 -16.77845 -16.00508 -15.63500 -15.17345 -15.01084 -14.71298 -14.63308 -14.10970 -13.68878 -13.54269 -13.24786 -12.90538 -12.84006 -12.61887 -12.18855 -11.94162 -11.71351 -11.52555 -11.51106 -11.35999 -10.91210 -10.85723 -10.43481 -10.33438 -10.05417 -10.03279 -9.75483 -9.58683 -9.26314 -9.17641 -8.82667 -8.62947 -8.56769 -6.77749 -5.61990 -3.02537 0.25701 1.01399 2.20341 2.30040 2.97516 3.31387 3.42047 3.47886 3.50463 3.76509 3.81675 4.08058 4.36687 4.52469 4.76325 4.81229 4.90088 5.17448 5.38927 5.41485 5.51289 5.54249 5.59194 5.76508 5.81111 5.84572 6.05897 6.18725 6.25683 6.29930 6.37841 6.47711 6.53307 6.71833 6.72852 6.86293 7.14646 7.33470 7.44676 7.49483 7.67154 7.83408 7.90488 8.38148 8.46079 9.26261 9.87090 10.51981 11.42022 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.015258 B = 0.003551 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.635455 B = 7883.462004 C = 8555.355936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.156 3.844 3 N -0.684 5.684 4 C 0.573 3.427 5 O -0.526 6.526 6 C 0.129 3.871 7 C -0.124 4.124 8 C -0.028 4.028 9 C 0.019 3.981 10 N -0.492 5.492 11 C 0.283 3.717 12 N -0.587 5.587 13 H 0.431 0.569 14 C 0.236 3.764 15 N -0.452 5.452 16 C -0.146 4.146 17 C 0.152 3.848 18 N -0.604 5.604 19 C -0.215 4.215 20 H 0.078 0.922 21 C -0.014 4.014 22 N -0.925 5.925 23 Si 0.913 3.087 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.292 1.292 27 C 0.137 3.863 28 H 0.071 0.929 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.407 0.593 32 H 0.159 0.841 33 H 0.149 0.851 34 H 0.226 0.774 35 H 0.078 0.922 36 H 0.062 0.938 37 H 0.010 0.990 38 H 0.109 0.891 39 H 0.250 0.750 40 H 0.032 0.968 41 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.379 19.260 -4.167 20.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.070 3.930 3 N -0.334 5.334 4 C 0.357 3.643 5 O -0.402 6.402 6 C -0.020 4.020 7 C -0.148 4.148 8 C -0.056 4.056 9 C -0.102 4.102 10 N -0.212 5.212 11 C -0.005 4.005 12 N -0.202 5.202 13 H 0.272 0.728 14 C -0.002 4.002 15 N -0.168 5.168 16 C -0.185 4.185 17 C 0.027 3.973 18 N -0.330 5.330 19 C -0.344 4.344 20 H 0.095 0.905 21 C -0.209 4.209 22 N -0.574 5.574 23 Si 0.744 3.256 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.219 1.219 27 C 0.010 3.990 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.242 0.758 32 H 0.177 0.823 33 H 0.166 0.834 34 H 0.242 0.758 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.028 0.972 38 H 0.127 0.873 39 H 0.061 0.939 40 H 0.050 0.950 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.537 18.975 -3.665 20.103 hybrid contribution 1.156 -0.549 -0.248 1.304 sum -4.381 18.426 -3.913 19.340 Atomic orbital electron populations 1.22034 0.94080 1.02278 1.02349 1.21440 0.93080 0.80145 0.98332 1.45853 1.52479 1.12365 1.22750 1.17620 0.80499 0.83323 0.82893 1.90772 1.38823 1.75412 1.35148 1.21116 0.95205 0.95258 0.90389 1.21610 1.00694 0.92860 0.99602 1.20461 0.93630 0.95461 0.95999 1.19867 1.02012 0.91576 0.96760 1.70436 1.13693 1.23709 1.13399 1.25535 0.97773 0.85879 0.91303 1.42881 1.43897 1.12194 1.21262 0.72835 1.18889 0.98164 0.91377 0.91800 1.66229 1.09943 1.13846 1.26796 1.23391 1.01271 0.98783 0.95017 1.22004 0.89354 1.00621 0.85341 1.44520 1.30707 1.50230 1.07589 1.19155 1.06168 1.16100 0.92937 0.90456 1.24755 0.98886 1.00788 0.96434 1.69778 1.30353 1.46497 1.10793 0.85997 0.79997 0.80378 0.79186 1.20514 1.21773 1.21891 1.21605 0.90362 0.93157 0.93869 0.90996 0.93087 0.91568 0.75757 0.82328 0.83362 0.75752 0.90384 0.91926 0.97197 0.87296 0.93922 0.95014 0.94739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 8.41 37.16 0.31 -2.04 16 2 C 0.16 2.85 0.80 -129.98 -0.10 2.75 16 3 N -0.68 -11.69 5.13 -46.80 -0.24 -11.93 16 4 C 0.57 9.84 7.03 -12.27 -0.09 9.76 16 5 O -0.53 -10.00 13.25 5.33 0.07 -9.93 16 6 C 0.13 1.93 6.74 -82.97 -0.56 1.38 16 7 C -0.12 -1.58 9.55 -39.47 -0.38 -1.95 16 8 C -0.03 -0.32 10.16 -39.41 -0.40 -0.72 16 9 C 0.02 0.24 7.25 -84.58 -0.61 -0.38 16 10 N -0.49 -5.44 11.27 -11.93 -0.13 -5.57 16 11 C 0.28 2.00 12.96 -89.74 -1.16 0.83 16 12 N -0.59 -4.82 6.22 -13.21 -0.08 -4.90 16 13 H 0.43 2.25 8.96 -40.82 -0.37 1.88 16 14 C 0.24 2.96 8.46 -155.73 -1.32 1.64 16 15 N -0.45 -6.48 9.54 -8.82 -0.08 -6.57 16 16 C -0.15 -2.70 6.10 -24.46 -0.15 -2.84 16 17 C 0.15 3.66 5.90 -2.41 -0.01 3.65 16 18 N -0.60 -15.91 3.39 -169.94 -0.58 -16.48 16 19 C -0.22 -6.18 10.27 -15.06 -0.15 -6.33 16 20 H 0.08 2.18 7.83 -52.48 -0.41 1.77 16 21 C -0.01 -0.39 5.49 -17.43 -0.10 -0.49 16 22 N -0.92 -27.07 10.08 55.49 0.56 -26.51 16 23 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 27 C 0.14 3.09 6.13 -3.07 -0.02 3.07 16 28 H 0.07 1.20 6.46 -51.93 -0.34 0.86 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 31 H 0.41 6.51 7.78 -40.82 -0.32 6.20 16 32 H 0.16 1.82 7.61 -52.49 -0.40 1.43 16 33 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.23 0.34 8.06 -52.48 -0.42 -0.08 16 35 H 0.08 1.40 8.04 -51.93 -0.42 0.98 16 36 H 0.06 0.99 8.04 -51.93 -0.42 0.58 16 37 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.11 2.95 5.84 -51.93 -0.30 2.65 16 39 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.03 0.72 7.82 -51.93 -0.41 0.32 16 41 H 0.03 0.85 6.48 -51.93 -0.34 0.51 16 LS Contribution 338.69 15.07 5.10 5.10 Total: -1.00 -35.40 338.69 -10.11 -45.51 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -4.96 Total: 5.46 kcal Atomic # 6 Polarization: 13.07 SS G_CDS: -4.74 Total: 8.33 kcal Atomic # 7 Polarization: -71.41 SS G_CDS: -0.56 Total: -71.97 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.07 Total: -9.93 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.40 -10.11 -45.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046416587.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.574 kcal (2) G-P(sol) polarization free energy of solvation -35.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds