Wall clock time and date at job start Tue Mar 31 2020 10:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46507 * 110.77772 * 2 1 4 4 C 1.34781 * 119.99481 * 61.78675 * 3 2 1 5 5 O 1.21537 * 120.00349 * 359.97438 * 4 3 2 6 6 C 1.47973 * 119.99349 * 180.02562 * 4 3 2 7 7 C 1.39729 * 119.42507 * 179.73093 * 6 4 3 8 8 C 1.36999 * 119.60008 * 179.70531 * 7 6 4 9 9 C 1.39894 * 118.35685 * 0.56431 * 8 7 6 10 10 N 1.35433 * 133.81558 * 179.74419 * 9 8 7 11 11 C 1.30209 * 109.58081 * 179.97438 * 10 9 8 12 12 N 1.35991 * 110.18030 * 359.97438 * 11 10 9 13 13 H 0.97002 * 126.29451 * 180.02562 * 12 11 10 14 14 C 1.37946 * 107.41472 * 0.02562 * 12 11 10 15 15 N 1.31885 * 133.82637 * 180.02562 * 14 12 11 16 16 C 1.55156 * 110.72288 * 236.76622 * 2 1 3 17 17 C 1.55130 * 101.48388 * 205.96862 * 16 2 1 18 18 N 1.47422 * 104.72242 * 37.29240 * 17 16 2 19 19 C 1.36935 * 125.64518 * 155.81677 * 18 17 16 20 20 H 1.08005 * 119.99877 * 179.68486 * 19 18 17 21 21 C 1.38811 * 120.00369 * 359.42000 * 19 18 17 22 22 N 1.31617 * 119.99773 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00451 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47045 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47426 * 119.99572 * 23 21 19 26 26 H 1.48501 * 109.46833 * 239.99815 * 23 21 19 27 27 C 1.47016 * 108.70314 * 335.55143 * 18 17 16 28 28 H 1.09001 * 109.47013 * 298.21083 * 1 2 3 29 29 H 1.08994 * 109.46915 * 58.21520 * 1 2 3 30 30 H 1.08996 * 109.46861 * 178.21363 * 1 2 3 31 31 H 0.96994 * 120.00375 * 241.78496 * 3 2 1 32 32 H 1.07998 * 120.20360 * 359.97438 * 7 6 4 33 33 H 1.07992 * 120.82058 * 180.28041 * 8 7 6 34 34 H 1.08005 * 124.91116 * 180.02562 * 11 10 9 35 35 H 1.09006 * 110.99969 * 324.20530 * 16 2 1 36 36 H 1.08998 * 111.00492 * 88.01513 * 16 2 1 37 37 H 1.09000 * 110.49697 * 278.45056 * 17 16 2 38 38 H 1.09001 * 110.34287 * 156.05818 * 17 16 2 39 39 H 0.97004 * 120.00382 * 180.02562 * 22 21 19 40 40 H 1.09003 * 109.88086 * 120.70618 * 27 18 17 41 41 H 1.09003 * 109.88164 * 241.71479 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0498 1.3698 0.0000 4 6 1.7728 2.1955 1.0286 5 8 1.0917 1.8040 1.9559 6 6 2.2973 3.5792 1.0283 7 6 1.9982 4.4269 2.0980 8 6 2.4869 5.7068 2.1044 9 6 3.2666 6.1256 1.0210 10 7 3.8878 7.2873 0.7064 11 6 4.4960 7.1608 -0.4380 12 7 4.3063 5.9090 -0.9343 13 1 4.6557 5.5640 -1.7709 14 6 3.5257 5.2200 -0.0294 15 7 3.0391 3.9949 0.0101 16 6 2.0791 -0.7953 -1.2138 17 6 3.4667 -1.2454 -0.6861 18 7 3.2446 -1.5506 0.7390 19 6 4.0044 -2.3968 1.5017 20 1 3.7614 -2.5504 2.5428 21 6 5.0835 -3.0615 0.9355 22 7 5.3760 -2.8788 -0.3347 23 14 6.1195 -4.2164 1.9758 24 1 5.5860 -4.2477 3.3613 25 1 6.0718 -5.5825 1.3956 26 1 7.5247 -3.7367 1.9976 27 6 2.0761 -0.7911 1.2072 28 1 -0.3633 0.4858 0.9056 29 1 -0.3633 0.5413 -0.8735 30 1 -0.3633 -1.0271 -0.0320 31 1 2.5931 1.6824 -0.7402 32 1 1.3891 4.0741 2.9170 33 1 2.2718 6.3771 2.9232 34 1 5.0690 7.9376 -0.9225 35 1 1.4453 -1.6535 -1.4375 36 1 2.1844 -0.1518 -2.0872 37 1 4.1948 -0.4413 -0.7928 38 1 3.8033 -2.1360 -1.2168 39 1 6.1299 -3.3435 -0.7305 40 1 1.3130 -1.4758 1.5775 41 1 2.3736 -0.1043 1.9996 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046416587.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:16 Heat of formation + Delta-G solvation = 63.411832 kcal Electronic energy + Delta-G solvation = -26071.728607 eV Core-core repulsion = 22373.622516 eV Total energy + Delta-G solvation = -3698.106090 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.41196 -41.44786 -39.60487 -38.44853 -35.80941 -34.85643 -33.68833 -32.37277 -31.86790 -30.78661 -30.25745 -27.55448 -26.14948 -25.33612 -24.42399 -22.67849 -22.49923 -22.10642 -20.52088 -19.63217 -19.31969 -18.73171 -18.24585 -17.17265 -16.89229 -16.72724 -16.16586 -16.00664 -15.95399 -15.56081 -15.19701 -14.85184 -14.34432 -14.31762 -14.05443 -13.93058 -13.77393 -13.44817 -13.31024 -13.10467 -12.83504 -12.79486 -12.33745 -12.22899 -12.10723 -12.04088 -11.96329 -11.70266 -11.60825 -11.03547 -10.77053 -10.39053 -10.10063 -10.03198 -9.63927 -8.89415 -7.79189 -5.23245 -0.67495 0.09012 1.41923 1.44490 1.45074 1.45902 1.55951 1.94482 2.07797 2.47594 2.76032 2.98981 3.24414 3.30417 3.46753 3.63297 3.69939 3.85898 3.98331 4.00695 4.16639 4.19431 4.57669 4.62862 4.65505 4.67461 4.80075 4.85095 4.90444 4.94277 4.98052 5.02767 5.08312 5.33312 5.40802 5.42718 5.58733 5.63877 5.78702 6.05051 6.30007 6.43555 6.60517 6.68542 7.09348 7.14885 7.76164 8.39989 9.22149 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.015258 B = 0.003551 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.635455 B = 7883.462004 C = 8555.355936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.165 3.835 3 N -0.685 5.685 4 C 0.571 3.429 5 O -0.552 6.552 6 C 0.098 3.902 7 C -0.124 4.124 8 C -0.029 4.029 9 C 0.014 3.986 10 N -0.529 5.529 11 C 0.316 3.684 12 N -0.578 5.578 13 H 0.446 0.554 14 C 0.212 3.788 15 N -0.463 5.463 16 C -0.127 4.127 17 C 0.155 3.845 18 N -0.624 5.624 19 C -0.241 4.241 20 H 0.072 0.928 21 C -0.062 4.062 22 N -0.945 5.945 23 Si 0.979 3.021 24 H -0.272 1.272 25 H -0.285 1.285 26 H -0.292 1.292 27 C 0.136 3.864 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.411 0.589 32 H 0.164 0.836 33 H 0.174 0.826 34 H 0.284 0.716 35 H 0.089 0.911 36 H 0.096 0.904 37 H -0.014 1.014 38 H 0.079 0.921 39 H 0.248 0.752 40 H 0.029 0.971 41 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.202 21.198 -5.224 22.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.079 3.921 3 N -0.335 5.335 4 C 0.357 3.643 5 O -0.429 6.429 6 C -0.049 4.049 7 C -0.148 4.148 8 C -0.057 4.057 9 C -0.108 4.108 10 N -0.249 5.249 11 C 0.029 3.971 12 N -0.194 5.194 13 H 0.289 0.711 14 C -0.028 4.028 15 N -0.179 5.179 16 C -0.165 4.165 17 C 0.030 3.970 18 N -0.350 5.350 19 C -0.370 4.370 20 H 0.090 0.910 21 C -0.255 4.255 22 N -0.595 5.595 23 Si 0.807 3.193 24 H -0.197 1.197 25 H -0.212 1.212 26 H -0.219 1.219 27 C 0.010 3.990 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.248 0.752 32 H 0.181 0.819 33 H 0.192 0.808 34 H 0.299 0.701 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.004 0.996 38 H 0.097 0.903 39 H 0.058 0.942 40 H 0.047 0.953 41 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -5.369 20.918 -4.753 22.113 hybrid contribution 1.224 -0.986 0.042 1.572 sum -4.146 19.933 -4.711 20.897 Atomic orbital electron populations 1.21958 0.91585 1.03191 1.03030 1.21309 0.94704 0.80284 0.95816 1.45803 1.52734 1.11798 1.23157 1.17969 0.79893 0.84214 0.82241 1.90741 1.40026 1.76269 1.35907 1.20805 0.97488 0.94535 0.92083 1.21662 1.00799 0.93203 0.99111 1.20726 0.93093 0.95191 0.96653 1.20214 1.01608 0.92193 0.96770 1.70493 1.15563 1.23263 1.15604 1.26768 0.94898 0.85836 0.89596 1.43009 1.42953 1.12150 1.21292 0.71110 1.19207 0.99207 0.91105 0.93271 1.66096 1.10055 1.14946 1.26771 1.23241 0.97581 0.99731 0.95979 1.21803 0.92207 0.98521 0.84428 1.44807 1.31371 1.50271 1.08530 1.19439 1.07192 1.17083 0.93262 0.91043 1.25560 0.99933 1.02264 0.97710 1.70014 1.30470 1.47021 1.11965 0.85002 0.77973 0.78272 0.78039 1.19662 1.21204 1.21870 1.21688 0.89221 0.92775 0.95339 0.92079 0.90487 0.90652 0.75187 0.81875 0.80830 0.70108 0.89233 0.88551 0.99577 0.90279 0.94220 0.95319 0.97177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.20 8.41 71.98 0.61 -3.59 16 2 C 0.17 6.00 0.80 4.79 0.00 6.00 16 3 N -0.68 -23.50 5.13 -420.25 -2.16 -25.66 16 4 C 0.57 20.11 7.03 86.82 0.61 20.72 16 5 O -0.55 -21.67 13.25 -3.83 -0.05 -21.72 16 6 C 0.10 3.00 6.74 41.96 0.28 3.28 16 7 C -0.12 -3.18 9.55 22.34 0.21 -2.97 16 8 C -0.03 -0.65 10.16 22.38 0.23 -0.42 16 9 C 0.01 0.32 7.25 39.69 0.29 0.61 16 10 N -0.53 -10.30 11.27 -191.66 -2.16 -12.46 16 11 C 0.32 3.25 12.96 180.04 2.33 5.59 16 12 N -0.58 -7.94 6.22 -195.69 -1.22 -9.16 16 13 H 0.45 3.40 8.96 -92.71 -0.83 2.57 16 14 C 0.21 5.07 8.46 134.06 1.13 6.21 16 15 N -0.46 -13.21 9.54 -181.83 -1.73 -14.95 16 16 C -0.13 -4.56 6.10 32.06 0.20 -4.37 16 17 C 0.16 7.67 5.90 86.93 0.51 8.18 16 18 N -0.62 -33.85 3.39 -691.57 -2.35 -36.20 16 19 C -0.24 -14.23 10.27 84.03 0.86 -13.37 16 20 H 0.07 4.17 7.83 -2.91 -0.02 4.15 16 21 C -0.06 -3.61 5.49 84.86 0.47 -3.14 16 22 N -0.94 -56.56 10.08 21.65 0.22 -56.34 16 23 Si 0.98 46.95 29.55 68.60 2.03 48.98 16 24 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 25 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 26 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 27 C 0.14 6.33 6.13 86.73 0.53 6.86 16 28 H 0.06 2.00 6.46 -2.39 -0.02 1.99 16 29 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.07 2.12 8.13 -2.39 -0.02 2.10 16 31 H 0.41 13.15 7.78 -92.71 -0.72 12.43 16 32 H 0.16 3.87 7.61 -2.91 -0.02 3.85 16 33 H 0.17 2.77 8.06 -2.91 -0.02 2.74 16 34 H 0.28 -0.80 8.06 -2.91 -0.02 -0.82 16 35 H 0.09 3.05 8.04 -2.38 -0.02 3.04 16 36 H 0.10 2.84 8.04 -2.39 -0.02 2.82 16 37 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 38 H 0.08 4.41 5.84 -2.39 -0.01 4.39 16 39 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 40 H 0.03 1.34 7.82 -2.39 -0.02 1.32 16 41 H 0.01 0.52 6.48 -2.39 -0.02 0.51 16 Total: -1.00 -80.28 338.69 0.39 -79.89 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -0.45 Total: 18.03 kcal Atomic # 6 Polarization: 21.32 SS G_CDS: 8.27 Total: 29.58 kcal Atomic # 7 Polarization: -145.37 SS G_CDS: -9.40 Total: -154.76 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.05 Total: -21.72 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Total: -80.28 0.39 -79.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046416587.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.300 kcal (2) G-P(sol) polarization free energy of solvation -80.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds