Wall clock time and date at job start Tue Mar 31 2020 10:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 110.88734 * 2 1 4 4 C 1.34773 * 119.99738 * 62.42700 * 3 2 1 5 5 O 1.21587 * 120.00212 * 359.97438 * 4 3 2 6 6 C 1.47574 * 119.99752 * 180.02562 * 4 3 2 7 7 C 1.36476 * 125.92111 * 180.02562 * 6 4 3 8 8 N 1.36196 * 107.01407 * 179.97438 * 7 6 4 9 9 C 1.36671 * 132.44759 * 179.97438 * 8 7 6 10 10 C 1.35470 * 119.10639 * 179.97438 * 9 8 7 11 11 C 1.40314 * 119.35658 * 0.02562 * 10 9 8 12 12 N 1.31137 * 120.40883 * 359.97438 * 11 10 9 13 13 C 1.34284 * 120.94970 * 0.02562 * 12 11 10 14 14 N 1.32205 * 131.65965 * 180.02562 * 13 12 11 15 15 C 1.55163 * 111.03762 * 236.09356 * 2 1 3 16 16 C 1.54330 * 102.93885 * 206.41104 * 15 2 1 17 17 N 1.47016 * 107.27409 * 22.19609 * 16 15 2 18 18 C 1.36940 * 125.65019 * 181.02491 * 17 16 15 19 19 H 1.08002 * 120.00212 * 173.94104 * 18 17 16 20 20 C 1.38812 * 119.99559 * 353.93831 * 18 17 16 21 21 N 1.31612 * 120.00351 * 6.83211 * 20 18 17 22 22 Si 1.86807 * 119.99592 * 186.83281 * 20 18 17 23 23 H 1.48493 * 109.47034 * 94.98646 * 22 20 18 24 24 H 1.48500 * 109.46571 * 214.98617 * 22 20 18 25 25 H 1.48498 * 109.47083 * 334.98475 * 22 20 18 26 26 C 1.47433 * 108.70501 * 1.05669 * 17 16 15 27 27 H 1.09002 * 109.46935 * 60.70581 * 1 2 3 28 28 H 1.09000 * 109.46895 * 180.70071 * 1 2 3 29 29 H 1.08995 * 109.47240 * 300.70020 * 1 2 3 30 30 H 0.97001 * 119.99496 * 242.42114 * 3 2 1 31 31 H 1.08001 * 126.49225 * 359.69409 * 7 6 4 32 32 H 1.08002 * 120.44774 * 359.97438 * 9 8 7 33 33 H 1.08003 * 120.32518 * 179.97438 * 10 9 8 34 34 H 1.07997 * 119.79206 * 179.97438 * 11 10 9 35 35 H 1.09002 * 110.71682 * 324.77286 * 15 2 1 36 36 H 1.08990 * 110.71871 * 88.04920 * 15 2 1 37 37 H 1.08991 * 109.88161 * 262.77119 * 16 15 2 38 38 H 1.08997 * 109.87707 * 141.61126 * 16 15 2 39 39 H 0.96999 * 120.00274 * 180.02562 * 21 20 18 40 40 H 1.08998 * 110.36516 * 217.03386 * 26 17 16 41 41 H 1.08998 * 110.45813 * 94.75534 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.7878 2.1909 1.0346 5 8 1.1153 1.7968 1.9678 6 6 2.3135 3.5698 1.0344 7 6 2.1213 4.5001 2.0143 8 7 2.7714 5.6312 1.6230 9 6 2.9155 6.8600 2.2036 10 6 3.6369 7.8110 1.5631 11 6 4.2177 7.5136 0.3209 12 7 4.0652 6.3270 -0.2161 13 6 3.3532 5.3736 0.4063 14 7 3.0677 4.1280 0.0677 15 6 2.0870 -0.8079 -1.2019 16 6 3.4684 -1.2733 -0.6950 17 7 3.4275 -1.2421 0.7742 18 6 4.4643 -1.5650 1.6086 19 1 4.3664 -1.4168 2.6739 20 6 5.6409 -2.0830 1.0850 21 7 5.8127 -2.1386 -0.2187 22 14 6.9805 -2.7011 2.2309 23 1 6.8345 -4.1670 2.4177 24 1 8.3111 -2.4073 1.6407 25 1 6.8606 -2.0203 3.5452 26 6 2.0852 -0.8062 1.2007 27 1 -0.3633 0.5028 -0.8963 28 1 -0.3633 -1.0276 0.0126 29 1 -0.3633 0.5246 0.8836 30 1 2.5886 1.6831 -0.7446 31 1 1.5566 4.3664 2.9251 32 1 2.4604 7.0700 3.1603 33 1 3.7631 8.7889 2.0038 34 1 4.7939 8.2667 -0.1961 35 1 1.4481 -1.6635 -1.4207 36 1 2.1930 -0.1700 -2.0793 37 1 4.2433 -0.5986 -1.0588 38 1 3.6666 -2.2885 -1.0389 39 1 6.6348 -2.5009 -0.5845 40 1 2.1553 -0.1715 2.0840 41 1 1.4511 -1.6692 1.4039 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046443991.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:52 Heat of formation + Delta-G solvation = 109.920815 kcal Electronic energy + Delta-G solvation = -26138.209857 eV Core-core repulsion = 22442.120547 eV Total energy + Delta-G solvation = -3696.089310 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.23795 -39.78443 -38.37952 -37.02135 -34.89582 -33.85244 -31.99950 -31.16146 -29.93530 -29.48325 -28.57291 -25.70783 -25.46498 -23.83313 -23.47723 -23.03370 -20.63195 -20.01788 -19.06476 -18.60874 -17.79042 -17.20200 -16.61516 -16.59157 -15.94415 -15.43955 -14.70223 -14.60276 -14.51414 -14.32121 -13.91276 -13.65693 -13.39351 -13.15243 -12.73142 -12.64608 -12.18086 -11.91819 -11.84920 -11.67865 -11.57302 -10.86473 -10.80807 -10.79638 -10.39672 -10.27982 -10.13978 -10.00670 -9.92773 -9.57203 -9.41548 -9.41190 -8.56324 -8.48252 -8.39508 -6.69361 -5.62607 -2.93242 0.14013 0.73678 1.94912 2.02682 3.18578 3.19250 3.46471 3.51459 3.52002 3.53573 3.72451 3.97577 4.13340 4.37801 4.58840 4.67447 4.90529 5.04997 5.19599 5.23373 5.26320 5.47179 5.55397 5.69675 5.78308 5.83184 6.05446 6.12885 6.19104 6.23236 6.24549 6.42617 6.49407 6.62965 6.75959 6.89805 7.18028 7.22613 7.58499 7.64217 7.69575 7.90228 8.01945 8.36025 8.58344 9.32527 9.93079 10.59978 11.49907 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013207 B = 0.003937 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.546431 B = 7110.528294 C = 8223.798072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.154 3.846 3 N -0.679 5.679 4 C 0.602 3.398 5 O -0.535 6.535 6 C 0.033 3.967 7 C -0.018 4.018 8 N -0.403 5.403 9 C 0.113 3.887 10 C -0.206 4.206 11 C 0.170 3.830 12 N -0.429 5.429 13 C 0.375 3.625 14 N -0.437 5.437 15 C -0.146 4.146 16 C 0.177 3.823 17 N -0.603 5.603 18 C -0.222 4.222 19 H 0.076 0.924 20 C -0.008 4.008 21 N -0.921 5.921 22 Si 0.908 3.092 23 H -0.289 1.289 24 H -0.292 1.292 25 H -0.282 1.282 26 C 0.132 3.868 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.408 0.592 31 H 0.201 0.799 32 H 0.177 0.823 33 H 0.166 0.834 34 H 0.184 0.816 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.043 0.957 38 H 0.047 0.953 39 H 0.251 0.749 40 H 0.055 0.945 41 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.875 21.425 1.941 23.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.067 3.933 3 N -0.328 5.328 4 C 0.386 3.614 5 O -0.413 6.413 6 C -0.101 4.101 7 C -0.153 4.153 8 N -0.081 5.081 9 C -0.018 4.018 10 C -0.229 4.229 11 C -0.020 4.020 12 N -0.140 5.140 13 C 0.026 3.974 14 N -0.161 5.161 15 C -0.185 4.185 16 C 0.052 3.948 17 N -0.329 5.329 18 C -0.351 4.351 19 H 0.094 0.906 20 C -0.204 4.204 21 N -0.569 5.569 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.219 1.219 25 H -0.208 1.208 26 C 0.005 3.995 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.244 0.756 31 H 0.218 0.782 32 H 0.194 0.806 33 H 0.183 0.817 34 H 0.201 0.799 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -8.619 20.111 1.047 21.905 hybrid contribution 0.637 0.553 1.720 1.916 sum -7.982 20.664 2.766 22.325 Atomic orbital electron populations 1.21991 0.94231 1.02243 1.02285 1.21583 0.92638 0.80457 0.98601 1.45633 1.52825 1.12261 1.22072 1.16685 0.79867 0.82064 0.82756 1.90754 1.39938 1.75386 1.35184 1.20942 1.00668 0.96209 0.92312 1.22609 1.04790 0.84416 1.03460 1.43905 1.35200 1.10328 1.18636 1.22247 0.97833 0.82453 0.99303 1.21836 1.01762 1.01292 0.98038 1.23366 0.94151 0.92414 0.92026 1.67967 1.14049 1.00322 1.31692 1.21898 0.98941 0.93766 0.82798 1.70838 1.16076 1.02412 1.26730 1.23226 1.00476 0.98838 0.95919 1.21167 0.90034 0.99930 0.83692 1.44435 1.07538 1.79118 1.01800 1.19054 0.92043 1.34533 0.89430 0.90649 1.24774 0.98084 1.01599 0.95956 1.69962 1.26299 1.51203 1.09411 0.86147 0.81403 0.78839 0.79736 1.21673 1.21874 1.20775 1.21888 0.87609 0.94894 0.95113 0.93046 0.91676 0.91038 0.75628 0.78234 0.80589 0.81663 0.79942 0.90740 0.91615 0.93917 0.93509 0.93899 0.92695 0.95551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 8.62 37.16 0.32 -2.05 16 2 C 0.15 2.91 0.82 -129.66 -0.11 2.81 16 3 N -0.68 -12.77 5.17 -46.63 -0.24 -13.01 16 4 C 0.60 11.29 7.21 -12.45 -0.09 11.20 16 5 O -0.54 -10.68 13.64 5.29 0.07 -10.61 16 6 C 0.03 0.56 6.94 -83.43 -0.58 -0.02 16 7 C -0.02 -0.24 11.47 -16.25 -0.19 -0.42 16 8 N -0.40 -4.78 2.93 -64.13 -0.19 -4.96 16 9 C 0.11 0.76 11.05 -16.38 -0.18 0.58 16 10 C -0.21 -1.02 10.06 -39.79 -0.40 -1.42 16 11 C 0.17 1.25 11.27 -17.07 -0.19 1.06 16 12 N -0.43 -5.61 10.48 -13.67 -0.14 -5.75 16 13 C 0.38 5.70 8.90 -322.42 -2.87 2.83 16 14 N -0.44 -7.77 11.01 -11.03 -0.12 -7.89 16 15 C -0.15 -2.77 5.99 -24.89 -0.15 -2.92 16 16 C 0.18 4.40 5.37 -3.06 -0.02 4.39 16 17 N -0.60 -16.17 3.39 -170.07 -0.58 -16.75 16 18 C -0.22 -6.54 10.26 -15.06 -0.15 -6.69 16 19 H 0.08 2.19 7.84 -52.49 -0.41 1.78 16 20 C -0.01 -0.24 5.48 -17.43 -0.10 -0.34 16 21 N -0.92 -27.92 10.36 55.49 0.58 -27.35 16 22 Si 0.91 23.11 29.56 -169.99 -5.02 18.08 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 24 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 25 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 26 C 0.13 3.02 6.11 -2.52 -0.02 3.00 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.95 8.13 -51.93 -0.42 0.53 16 29 H 0.07 1.20 6.45 -51.93 -0.33 0.87 16 30 H 0.41 7.58 8.19 -40.82 -0.33 7.24 16 31 H 0.20 2.04 8.06 -52.49 -0.42 1.62 16 32 H 0.18 0.47 8.06 -52.49 -0.42 0.05 16 33 H 0.17 0.12 8.06 -52.48 -0.42 -0.31 16 34 H 0.18 0.59 8.06 -52.49 -0.42 0.16 16 35 H 0.07 1.29 8.04 -51.93 -0.42 0.88 16 36 H 0.07 1.11 8.05 -51.93 -0.42 0.70 16 37 H 0.04 1.18 7.55 -51.93 -0.39 0.79 16 38 H 0.05 1.28 7.37 -51.93 -0.38 0.90 16 39 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.05 1.34 6.31 -51.93 -0.33 1.02 16 41 H 0.03 0.60 8.03 -51.93 -0.42 0.18 16 LS Contribution 342.06 15.07 5.15 5.15 Total: -1.00 -37.64 342.06 -10.32 -47.96 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -5.11 Total: 3.14 kcal Atomic # 6 Polarization: 16.70 SS G_CDS: -4.72 Total: 11.99 kcal Atomic # 7 Polarization: -75.02 SS G_CDS: -0.70 Total: -75.72 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.07 Total: -10.61 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.08 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -37.64 -10.32 -47.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046443991.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.879 kcal (2) G-P(sol) polarization free energy of solvation -37.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds