Wall clock time and date at job start Tue Mar 31 2020 10:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 110.88734 * 2 1 4 4 C 1.34773 * 119.99738 * 62.42700 * 3 2 1 5 5 O 1.21587 * 120.00212 * 359.97438 * 4 3 2 6 6 C 1.47574 * 119.99752 * 180.02562 * 4 3 2 7 7 C 1.36476 * 125.92111 * 180.02562 * 6 4 3 8 8 N 1.36196 * 107.01407 * 179.97438 * 7 6 4 9 9 C 1.36671 * 132.44759 * 179.97438 * 8 7 6 10 10 C 1.35470 * 119.10639 * 179.97438 * 9 8 7 11 11 C 1.40314 * 119.35658 * 0.02562 * 10 9 8 12 12 N 1.31137 * 120.40883 * 359.97438 * 11 10 9 13 13 C 1.34284 * 120.94970 * 0.02562 * 12 11 10 14 14 N 1.32205 * 131.65965 * 180.02562 * 13 12 11 15 15 C 1.55163 * 111.03762 * 236.09356 * 2 1 3 16 16 C 1.54330 * 102.93885 * 206.41104 * 15 2 1 17 17 N 1.47016 * 107.27409 * 22.19609 * 16 15 2 18 18 C 1.36940 * 125.65019 * 181.02491 * 17 16 15 19 19 H 1.08002 * 120.00212 * 173.94104 * 18 17 16 20 20 C 1.38812 * 119.99559 * 353.93831 * 18 17 16 21 21 N 1.31612 * 120.00351 * 6.83211 * 20 18 17 22 22 Si 1.86807 * 119.99592 * 186.83281 * 20 18 17 23 23 H 1.48493 * 109.47034 * 94.98646 * 22 20 18 24 24 H 1.48500 * 109.46571 * 214.98617 * 22 20 18 25 25 H 1.48498 * 109.47083 * 334.98475 * 22 20 18 26 26 C 1.47433 * 108.70501 * 1.05669 * 17 16 15 27 27 H 1.09002 * 109.46935 * 60.70581 * 1 2 3 28 28 H 1.09000 * 109.46895 * 180.70071 * 1 2 3 29 29 H 1.08995 * 109.47240 * 300.70020 * 1 2 3 30 30 H 0.97001 * 119.99496 * 242.42114 * 3 2 1 31 31 H 1.08001 * 126.49225 * 359.69409 * 7 6 4 32 32 H 1.08002 * 120.44774 * 359.97438 * 9 8 7 33 33 H 1.08003 * 120.32518 * 179.97438 * 10 9 8 34 34 H 1.07997 * 119.79206 * 179.97438 * 11 10 9 35 35 H 1.09002 * 110.71682 * 324.77286 * 15 2 1 36 36 H 1.08990 * 110.71871 * 88.04920 * 15 2 1 37 37 H 1.08991 * 109.88161 * 262.77119 * 16 15 2 38 38 H 1.08997 * 109.87707 * 141.61126 * 16 15 2 39 39 H 0.96999 * 120.00274 * 180.02562 * 21 20 18 40 40 H 1.08998 * 110.36516 * 217.03386 * 26 17 16 41 41 H 1.08998 * 110.45813 * 94.75534 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.7878 2.1909 1.0346 5 8 1.1153 1.7968 1.9678 6 6 2.3135 3.5698 1.0344 7 6 2.1213 4.5001 2.0143 8 7 2.7714 5.6312 1.6230 9 6 2.9155 6.8600 2.2036 10 6 3.6369 7.8110 1.5631 11 6 4.2177 7.5136 0.3209 12 7 4.0652 6.3270 -0.2161 13 6 3.3532 5.3736 0.4063 14 7 3.0677 4.1280 0.0677 15 6 2.0870 -0.8079 -1.2019 16 6 3.4684 -1.2733 -0.6950 17 7 3.4275 -1.2421 0.7742 18 6 4.4643 -1.5650 1.6086 19 1 4.3664 -1.4168 2.6739 20 6 5.6409 -2.0830 1.0850 21 7 5.8127 -2.1386 -0.2187 22 14 6.9805 -2.7011 2.2309 23 1 6.8345 -4.1670 2.4177 24 1 8.3111 -2.4073 1.6407 25 1 6.8606 -2.0203 3.5452 26 6 2.0852 -0.8062 1.2007 27 1 -0.3633 0.5028 -0.8963 28 1 -0.3633 -1.0276 0.0126 29 1 -0.3633 0.5246 0.8836 30 1 2.5886 1.6831 -0.7446 31 1 1.5566 4.3664 2.9251 32 1 2.4604 7.0700 3.1603 33 1 3.7631 8.7889 2.0038 34 1 4.7939 8.2667 -0.1961 35 1 1.4481 -1.6635 -1.4207 36 1 2.1930 -0.1700 -2.0793 37 1 4.2433 -0.5986 -1.0588 38 1 3.6666 -2.2885 -1.0389 39 1 6.6348 -2.5009 -0.5845 40 1 2.1553 -0.1715 2.0840 41 1 1.4511 -1.6692 1.4039 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046443991.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:51 Heat of formation + Delta-G solvation = 84.001716 kcal Electronic energy + Delta-G solvation = -26139.333793 eV Core-core repulsion = 22442.120547 eV Total energy + Delta-G solvation = -3697.213246 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.12017 -41.21996 -39.38448 -38.53930 -35.79717 -35.61564 -33.69267 -32.25730 -31.47898 -30.56462 -30.25022 -27.53098 -26.50189 -25.41697 -24.41599 -24.13223 -22.29738 -21.58570 -20.49256 -19.64453 -18.93043 -18.62261 -17.88558 -17.52118 -17.08377 -16.81335 -16.65171 -16.01817 -15.61680 -15.52387 -15.21127 -15.15067 -14.82972 -14.20095 -13.91357 -13.86549 -13.56162 -13.52157 -13.39130 -13.12707 -12.93936 -12.82311 -12.75992 -12.18253 -12.06335 -12.01069 -11.78993 -11.71860 -11.58736 -10.96741 -10.84611 -10.70700 -10.26743 -9.99289 -9.39599 -8.86878 -7.87929 -5.21153 -0.52083 -0.03158 0.90434 1.23526 1.40476 1.43268 1.51908 2.08083 2.27481 2.46770 2.50018 2.58789 3.28652 3.31899 3.47868 3.57579 3.66232 3.72646 3.98086 4.03834 4.12015 4.17394 4.31829 4.57812 4.61414 4.68340 4.69364 4.78738 4.87233 4.92475 5.03319 5.06278 5.09366 5.19468 5.35136 5.41064 5.50672 5.61846 5.67078 5.74086 6.18353 6.31154 6.53085 6.80286 7.09214 7.16912 7.76035 8.41368 9.22806 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013207 B = 0.003937 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.546431 B = 7110.528294 C = 8223.798072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.162 3.838 3 N -0.685 5.685 4 C 0.600 3.400 5 O -0.556 6.556 6 C -0.013 4.013 7 C -0.002 4.002 8 N -0.405 5.405 9 C 0.100 3.900 10 C -0.185 4.185 11 C 0.187 3.813 12 N -0.489 5.489 13 C 0.362 3.638 14 N -0.493 5.493 15 C -0.129 4.129 16 C 0.186 3.814 17 N -0.622 5.622 18 C -0.244 4.244 19 H 0.070 0.930 20 C -0.061 4.061 21 N -0.946 5.946 22 Si 0.976 3.024 23 H -0.282 1.282 24 H -0.292 1.292 25 H -0.273 1.273 26 C 0.129 3.871 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.406 0.594 31 H 0.227 0.773 32 H 0.222 0.778 33 H 0.222 0.778 34 H 0.226 0.774 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.005 0.995 38 H 0.015 0.985 39 H 0.247 0.753 40 H 0.034 0.966 41 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.485 24.610 3.183 26.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.075 3.925 3 N -0.334 5.334 4 C 0.386 3.614 5 O -0.435 6.435 6 C -0.145 4.145 7 C -0.138 4.138 8 N -0.082 5.082 9 C -0.028 4.028 10 C -0.207 4.207 11 C 0.000 4.000 12 N -0.202 5.202 13 C 0.011 3.989 14 N -0.218 5.218 15 C -0.167 4.167 16 C 0.061 3.939 17 N -0.348 5.348 18 C -0.373 4.373 19 H 0.088 0.912 20 C -0.254 4.254 21 N -0.594 5.594 22 Si 0.804 3.196 23 H -0.209 1.209 24 H -0.219 1.219 25 H -0.198 1.198 26 C 0.003 3.997 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.080 0.920 30 H 0.242 0.758 31 H 0.243 0.757 32 H 0.239 0.761 33 H 0.239 0.761 34 H 0.242 0.758 35 H 0.118 0.882 36 H 0.108 0.892 37 H 0.023 0.977 38 H 0.034 0.966 39 H 0.057 0.943 40 H 0.052 0.948 41 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -9.260 23.335 2.312 25.211 hybrid contribution 0.929 -0.123 1.387 1.674 sum -8.331 23.212 3.699 24.938 Atomic orbital electron populations 1.21914 0.91227 1.03538 1.02939 1.21541 0.94614 0.80178 0.96165 1.45691 1.53110 1.12199 1.22374 1.17003 0.79307 0.82940 0.82143 1.90711 1.40974 1.76202 1.35657 1.20717 1.03335 0.96083 0.94368 1.22877 1.03809 0.84134 1.02985 1.44007 1.34592 1.11565 1.17990 1.23308 0.97991 0.80550 1.00972 1.22513 0.98948 1.02875 0.96370 1.24391 0.91885 0.91044 0.92690 1.68064 1.16514 1.02110 1.33537 1.22025 0.99236 0.93605 0.84022 1.70637 1.18159 1.04586 1.28376 1.23108 0.97005 1.00072 0.96543 1.20917 0.92684 0.97336 0.82968 1.44697 1.08501 1.79110 1.02477 1.19355 0.93329 1.34851 0.89795 0.91180 1.25606 1.00341 1.01926 0.97575 1.70180 1.26607 1.51690 1.10956 0.85105 0.78176 0.78329 0.78014 1.20876 1.21862 1.19839 1.22009 0.86226 0.95228 0.96187 0.90783 0.89958 0.92024 0.75839 0.75688 0.76106 0.76099 0.75785 0.88211 0.89234 0.97705 0.96647 0.94345 0.94809 0.94808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.21 8.62 71.98 0.62 -3.59 16 2 C 0.16 6.18 0.82 5.00 0.00 6.19 16 3 N -0.69 -26.87 5.17 -419.70 -2.17 -29.04 16 4 C 0.60 23.56 7.21 86.71 0.63 24.19 16 5 O -0.56 -22.97 13.64 -3.99 -0.05 -23.02 16 6 C -0.01 -0.45 6.94 40.75 0.28 -0.17 16 7 C 0.00 -0.05 11.47 83.60 0.96 0.91 16 8 N -0.40 -9.06 2.93 -356.82 -1.05 -10.11 16 9 C 0.10 0.95 11.05 83.30 0.92 1.87 16 10 C -0.19 -0.86 10.06 22.13 0.22 -0.64 16 11 C 0.19 2.10 11.27 85.30 0.96 3.06 16 12 N -0.49 -12.45 10.48 -197.17 -2.07 -14.51 16 13 C 0.36 11.13 8.90 261.35 2.33 13.45 16 14 N -0.49 -18.56 11.01 -188.82 -2.08 -20.64 16 15 C -0.13 -4.89 5.99 31.79 0.19 -4.70 16 16 C 0.19 9.69 5.37 86.73 0.47 10.16 16 17 N -0.62 -34.80 3.39 -691.97 -2.35 -37.15 16 18 C -0.24 -14.94 10.26 84.03 0.86 -14.08 16 19 H 0.07 4.23 7.84 -2.91 -0.02 4.21 16 20 C -0.06 -3.71 5.48 84.86 0.47 -3.24 16 21 N -0.95 -59.64 10.36 21.65 0.22 -59.41 16 22 Si 0.98 48.71 29.56 68.60 2.03 50.73 16 23 H -0.28 -13.68 7.11 99.48 0.71 -12.98 16 24 H -0.29 -14.48 7.11 99.48 0.71 -13.78 16 25 H -0.27 -13.12 7.11 99.48 0.71 -12.42 16 26 C 0.13 6.10 6.11 86.86 0.53 6.63 16 27 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.08 2.22 8.13 -2.39 -0.02 2.21 16 29 H 0.06 2.04 6.45 -2.39 -0.02 2.02 16 30 H 0.41 16.05 8.19 -92.71 -0.76 15.29 16 31 H 0.23 4.37 8.06 -2.91 -0.02 4.35 16 32 H 0.22 -0.06 8.06 -2.91 -0.02 -0.08 16 33 H 0.22 -1.42 8.06 -2.91 -0.02 -1.44 16 34 H 0.23 0.35 8.06 -2.91 -0.02 0.33 16 35 H 0.10 3.31 8.04 -2.39 -0.02 3.29 16 36 H 0.09 2.99 8.05 -2.39 -0.02 2.97 16 37 H 0.00 0.28 7.55 -2.39 -0.02 0.26 16 38 H 0.02 0.88 7.37 -2.39 -0.02 0.87 16 39 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 40 H 0.03 1.72 6.31 -2.39 -0.02 1.71 16 41 H 0.03 1.55 8.03 -2.39 -0.02 1.53 16 Total: -1.00 -90.79 342.06 2.24 -88.55 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 0.31 Total: 14.57 kcal Atomic # 6 Polarization: 30.59 SS G_CDS: 9.44 Total: 40.03 kcal Atomic # 7 Polarization: -161.38 SS G_CDS: -9.49 Total: -170.87 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.05 Total: -23.02 kcal Atomic # 14 Polarization: 48.71 SS G_CDS: 2.03 Total: 50.73 kcal Total: -90.79 2.24 -88.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046443991.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.555 kcal (2) G-P(sol) polarization free energy of solvation -90.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds