Wall clock time and date at job start Tue Mar 31 2020 10:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46497 * 110.88669 * 2 1 4 4 C 1.34771 * 120.00029 * 62.42742 * 3 2 1 5 5 O 1.21626 * 120.00218 * 359.97438 * 4 3 2 6 6 C 1.47209 * 120.00089 * 179.97438 * 4 3 2 7 7 C 1.37754 * 119.94233 * 180.26157 * 6 4 3 8 8 C 1.39860 * 119.93007 * 180.25597 * 7 6 4 9 9 C 1.36304 * 119.81656 * 359.45980 * 8 7 6 10 10 C 1.40771 * 119.71314 * 0.28226 * 9 8 7 11 11 N 1.32813 * 132.74020 * 179.97438 * 10 9 8 12 12 C 1.32377 * 109.73977 * 180.02562 * 11 10 9 13 13 N 1.31388 * 109.61938 * 359.97438 * 12 11 10 14 14 N 1.36554 * 119.87554 * 359.97438 * 10 9 8 15 15 C 1.55152 * 111.03548 * 236.09318 * 2 1 3 16 16 C 1.54329 * 102.94282 * 206.41414 * 15 2 1 17 17 N 1.47013 * 107.26984 * 22.18920 * 16 15 2 18 18 C 1.36944 * 125.64755 * 181.02669 * 17 16 15 19 19 H 1.08001 * 119.99960 * 180.02562 * 18 17 16 20 20 C 1.38809 * 119.99709 * 0.04277 * 18 17 16 21 21 N 1.31618 * 120.00190 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99593 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47189 * 90.00379 * 22 20 18 24 24 H 1.48502 * 109.47236 * 210.00078 * 22 20 18 25 25 H 1.48496 * 109.47649 * 330.00245 * 22 20 18 26 26 C 1.47423 * 108.70699 * 1.06718 * 17 16 15 27 27 H 1.08992 * 109.46831 * 60.70038 * 1 2 3 28 28 H 1.08990 * 109.46993 * 180.70364 * 1 2 3 29 29 H 1.08996 * 109.46626 * 300.70248 * 1 2 3 30 30 H 0.96997 * 119.99942 * 242.42762 * 3 2 1 31 31 H 1.08000 * 120.03382 * 0.02562 * 7 6 4 32 32 H 1.08002 * 120.09355 * 179.74249 * 8 7 6 33 33 H 1.08006 * 120.14116 * 180.25451 * 9 8 7 34 34 H 1.07999 * 125.19041 * 179.97438 * 12 11 10 35 35 H 1.09003 * 110.72090 * 324.77248 * 15 2 1 36 36 H 1.08997 * 110.72105 * 88.04742 * 15 2 1 37 37 H 1.09003 * 109.87739 * 262.77853 * 16 15 2 38 38 H 1.08991 * 110.01085 * 141.68706 * 16 15 2 39 39 H 0.96996 * 119.99635 * 179.97438 * 21 20 18 40 40 H 1.09000 * 110.36622 * 217.03502 * 26 17 16 41 41 H 1.08995 * 110.46482 * 94.75313 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0524 1.3687 0.0000 4 6 1.7879 2.1909 1.0346 5 8 1.1152 1.7967 1.9681 6 6 2.3132 3.5661 1.0349 7 6 2.0466 4.4037 2.0955 8 6 2.5413 5.7119 2.0930 9 6 3.2952 6.1494 1.0451 10 6 3.5652 5.2821 -0.0303 11 7 4.2521 5.4304 -1.1573 12 6 4.2128 4.3067 -1.8560 13 7 3.5069 3.4083 -1.2072 14 7 3.0717 4.0089 -0.0178 15 6 2.0870 -0.8078 -1.2019 16 6 3.4684 -1.2734 -0.6951 17 7 3.4275 -1.2420 0.7742 18 6 4.4643 -1.5650 1.6085 19 1 4.3332 -1.5100 2.6791 20 6 5.6839 -1.9627 1.0781 21 7 5.8439 -2.0289 -0.2267 22 14 7.0979 -2.4040 2.2162 23 1 7.0445 -3.8539 2.5328 24 1 8.3869 -2.0902 1.5488 25 1 6.9865 -1.6188 3.4716 26 6 2.0853 -0.8063 1.2007 27 1 -0.3633 0.5029 -0.8961 28 1 -0.3633 -1.0275 0.0126 29 1 -0.3632 0.5247 0.8836 30 1 2.5886 1.6832 -0.7446 31 1 1.4531 4.0518 2.9263 32 1 2.3304 6.3722 2.9213 33 1 3.6833 7.1573 1.0397 34 1 4.6884 4.1520 -2.8132 35 1 1.4481 -1.6635 -1.4207 36 1 2.1930 -0.1700 -2.0793 37 1 4.2433 -0.5986 -1.0588 38 1 3.6692 -2.2880 -1.0389 39 1 6.6962 -2.3065 -0.5972 40 1 2.1554 -0.1714 2.0839 41 1 1.4512 -1.6691 1.4039 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046450885.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:34 Heat of formation + Delta-G solvation = 126.334543 kcal Electronic energy + Delta-G solvation = -26971.400853 eV Core-core repulsion = 23276.023296 eV Total energy + Delta-G solvation = -3695.377557 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.84723 -40.00621 -38.10589 -37.01057 -34.27373 -33.67951 -31.75258 -31.12076 -30.25484 -29.80515 -28.66556 -25.71105 -25.13044 -23.69255 -23.61184 -22.82260 -20.95321 -20.10099 -19.25453 -18.08191 -17.68160 -16.98596 -16.56786 -16.42542 -15.89412 -15.53775 -14.70662 -14.64280 -14.40067 -14.25817 -13.74016 -13.32863 -13.16668 -12.89408 -12.78317 -12.39172 -12.06181 -12.01964 -11.81770 -11.72899 -11.67183 -11.36783 -10.89774 -10.88204 -10.53004 -10.39934 -10.25196 -10.08053 -10.01042 -9.76782 -9.64722 -9.53647 -8.70998 -8.56831 -8.43837 -6.77937 -5.68490 -3.00405 0.05736 0.74114 1.80904 2.32476 2.93020 3.16052 3.39861 3.41349 3.46147 3.47981 3.75205 3.97040 4.52004 4.54257 4.58313 4.65687 4.97359 5.09214 5.16040 5.36114 5.48310 5.51417 5.61421 5.69185 5.73954 5.91564 5.97019 6.02443 6.10827 6.13689 6.24822 6.32719 6.39799 6.42375 6.54176 6.65240 6.79858 7.06088 7.56809 7.60586 7.71677 7.82702 7.86557 8.28452 8.37195 9.25496 9.85662 10.51779 11.43498 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.012317 B = 0.004979 C = 0.004438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.813265 B = 5622.807440 C = 6307.160396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.151 3.849 3 N -0.678 5.678 4 C 0.559 3.441 5 O -0.524 6.524 6 C 0.100 3.900 7 C -0.088 4.088 8 C -0.068 4.068 9 C -0.087 4.087 10 C 0.276 3.724 11 N -0.543 5.543 12 C 0.247 3.753 13 N -0.341 5.341 14 N -0.273 5.273 15 C -0.146 4.146 16 C 0.178 3.822 17 N -0.602 5.602 18 C -0.222 4.222 19 H 0.076 0.924 20 C -0.009 4.009 21 N -0.923 5.923 22 Si 0.910 3.090 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.132 3.868 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.414 0.586 31 H 0.174 0.826 32 H 0.159 0.841 33 H 0.161 0.839 34 H 0.230 0.770 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.046 0.954 38 H 0.045 0.955 39 H 0.251 0.749 40 H 0.055 0.945 41 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.352 15.915 -0.680 18.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.065 3.935 3 N -0.332 5.332 4 C 0.342 3.658 5 O -0.402 6.402 6 C -0.011 4.011 7 C -0.112 4.112 8 C -0.094 4.094 9 C -0.109 4.109 10 C 0.023 3.977 11 N -0.273 5.273 12 C -0.053 4.053 13 N -0.173 5.173 14 N -0.050 5.050 15 C -0.184 4.184 16 C 0.053 3.947 17 N -0.329 5.329 18 C -0.351 4.351 19 H 0.094 0.906 20 C -0.205 4.205 21 N -0.571 5.571 22 Si 0.741 3.259 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.208 1.208 26 C 0.005 3.995 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.256 0.744 31 H 0.192 0.808 32 H 0.176 0.824 33 H 0.178 0.822 34 H 0.246 0.754 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -9.454 15.038 -0.630 17.774 hybrid contribution 1.244 -0.095 0.215 1.266 sum -8.210 14.943 -0.415 17.055 Atomic orbital electron populations 1.21992 0.94121 1.02419 1.02249 1.21619 0.92711 0.80396 0.98796 1.46155 1.52353 1.12480 1.22233 1.17404 0.81332 0.83318 0.83711 1.90799 1.39515 1.75039 1.34844 1.20838 0.96291 0.96595 0.87395 1.21490 1.00094 0.92682 0.96917 1.21262 0.94676 0.95299 0.98161 1.20494 0.99874 1.00028 0.90491 1.21844 0.94762 0.85184 0.95909 1.70834 1.25481 1.26582 1.04446 1.26181 0.93806 0.85507 0.99804 1.78090 1.24316 1.20840 0.94017 1.47899 1.32056 1.10997 1.14085 1.23223 1.00551 0.98792 0.95862 1.21151 0.90004 0.99914 0.83639 1.44435 1.07731 1.78850 1.01836 1.19050 0.89416 1.37670 0.88951 0.90608 1.24768 0.97723 1.02026 0.96009 1.69951 1.24076 1.53872 1.09165 0.86142 0.82008 0.78236 0.79556 1.21558 1.21741 1.20817 1.21888 0.87727 0.94913 0.95008 0.93094 0.91480 0.91015 0.74369 0.80822 0.82359 0.82155 0.75434 0.90655 0.91708 0.93625 0.93698 0.93866 0.92720 0.95420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 8.62 37.16 0.32 -2.01 16 2 C 0.15 2.84 0.82 -129.67 -0.11 2.73 16 3 N -0.68 -12.58 5.16 -46.75 -0.24 -12.82 16 4 C 0.56 9.94 7.16 -12.62 -0.09 9.85 16 5 O -0.52 -9.89 13.06 5.25 0.07 -9.83 16 6 C 0.10 1.50 6.80 -82.05 -0.56 0.94 16 7 C -0.09 -0.95 9.58 -39.15 -0.38 -1.33 16 8 C -0.07 -0.53 10.04 -39.67 -0.40 -0.92 16 9 C -0.09 -0.81 10.09 -39.32 -0.40 -1.21 16 10 C 0.28 3.75 7.88 -156.38 -1.23 2.52 16 11 N -0.54 -7.72 11.24 -13.99 -0.16 -7.88 16 12 C 0.25 3.35 12.98 -92.00 -1.19 2.16 16 13 N -0.34 -5.46 9.99 29.25 0.29 -5.17 16 14 N -0.27 -4.20 3.93 -8.82 -0.03 -4.23 16 15 C -0.15 -2.75 5.99 -24.90 -0.15 -2.90 16 16 C 0.18 4.38 5.37 -3.07 -0.02 4.36 16 17 N -0.60 -15.91 3.39 -170.08 -0.58 -16.49 16 18 C -0.22 -6.44 10.28 -15.06 -0.15 -6.60 16 19 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 20 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 21 N -0.92 -27.58 10.31 55.49 0.57 -27.01 16 22 Si 0.91 22.84 29.55 -169.99 -5.02 17.82 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 25 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 26 C 0.13 2.96 6.11 -2.53 -0.02 2.94 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.96 8.13 -51.93 -0.42 0.53 16 29 H 0.07 1.17 6.45 -51.93 -0.33 0.84 16 30 H 0.41 7.70 5.43 -40.82 -0.22 7.48 16 31 H 0.17 1.62 7.59 -52.49 -0.40 1.22 16 32 H 0.16 0.55 8.06 -52.49 -0.42 0.13 16 33 H 0.16 1.00 8.06 -52.48 -0.42 0.58 16 34 H 0.23 2.11 8.06 -52.49 -0.42 1.68 16 35 H 0.07 1.29 8.04 -51.93 -0.42 0.87 16 36 H 0.06 1.11 8.05 -51.93 -0.42 0.69 16 37 H 0.05 1.25 7.38 -51.93 -0.38 0.87 16 38 H 0.04 1.21 7.50 -51.93 -0.39 0.82 16 39 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.05 1.31 6.31 -51.93 -0.33 0.98 16 41 H 0.03 0.62 8.03 -51.93 -0.42 0.20 16 LS Contribution 336.52 15.07 5.07 5.07 Total: -1.00 -35.28 336.52 -9.46 -44.74 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -4.97 Total: 5.62 kcal Atomic # 6 Polarization: 14.64 SS G_CDS: -4.46 Total: 10.17 kcal Atomic # 7 Polarization: -73.45 SS G_CDS: -0.15 Total: -73.60 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.07 Total: -9.83 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.28 -9.46 -44.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046450885.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.080 kcal (2) G-P(sol) polarization free energy of solvation -35.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds