Wall clock time and date at job start Tue Mar 31 2020 10:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46497 * 110.88669 * 2 1 4 4 C 1.34771 * 120.00029 * 62.42742 * 3 2 1 5 5 O 1.21626 * 120.00218 * 359.97438 * 4 3 2 6 6 C 1.47209 * 120.00089 * 179.97438 * 4 3 2 7 7 C 1.37754 * 119.94233 * 180.26157 * 6 4 3 8 8 C 1.39860 * 119.93007 * 180.25597 * 7 6 4 9 9 C 1.36304 * 119.81656 * 359.45980 * 8 7 6 10 10 C 1.40771 * 119.71314 * 0.28226 * 9 8 7 11 11 N 1.32813 * 132.74020 * 179.97438 * 10 9 8 12 12 C 1.32377 * 109.73977 * 180.02562 * 11 10 9 13 13 N 1.31388 * 109.61938 * 359.97438 * 12 11 10 14 14 N 1.36554 * 119.87554 * 359.97438 * 10 9 8 15 15 C 1.55152 * 111.03548 * 236.09318 * 2 1 3 16 16 C 1.54329 * 102.94282 * 206.41414 * 15 2 1 17 17 N 1.47013 * 107.26984 * 22.18920 * 16 15 2 18 18 C 1.36944 * 125.64755 * 181.02669 * 17 16 15 19 19 H 1.08001 * 119.99960 * 180.02562 * 18 17 16 20 20 C 1.38809 * 119.99709 * 0.04277 * 18 17 16 21 21 N 1.31618 * 120.00190 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99593 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47189 * 90.00379 * 22 20 18 24 24 H 1.48502 * 109.47236 * 210.00078 * 22 20 18 25 25 H 1.48496 * 109.47649 * 330.00245 * 22 20 18 26 26 C 1.47423 * 108.70699 * 1.06718 * 17 16 15 27 27 H 1.08992 * 109.46831 * 60.70038 * 1 2 3 28 28 H 1.08990 * 109.46993 * 180.70364 * 1 2 3 29 29 H 1.08996 * 109.46626 * 300.70248 * 1 2 3 30 30 H 0.96997 * 119.99942 * 242.42762 * 3 2 1 31 31 H 1.08000 * 120.03382 * 0.02562 * 7 6 4 32 32 H 1.08002 * 120.09355 * 179.74249 * 8 7 6 33 33 H 1.08006 * 120.14116 * 180.25451 * 9 8 7 34 34 H 1.07999 * 125.19041 * 179.97438 * 12 11 10 35 35 H 1.09003 * 110.72090 * 324.77248 * 15 2 1 36 36 H 1.08997 * 110.72105 * 88.04742 * 15 2 1 37 37 H 1.09003 * 109.87739 * 262.77853 * 16 15 2 38 38 H 1.08991 * 110.01085 * 141.68706 * 16 15 2 39 39 H 0.96996 * 119.99635 * 179.97438 * 21 20 18 40 40 H 1.09000 * 110.36622 * 217.03502 * 26 17 16 41 41 H 1.08995 * 110.46482 * 94.75313 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0524 1.3687 0.0000 4 6 1.7879 2.1909 1.0346 5 8 1.1152 1.7967 1.9681 6 6 2.3132 3.5661 1.0349 7 6 2.0466 4.4037 2.0955 8 6 2.5413 5.7119 2.0930 9 6 3.2952 6.1494 1.0451 10 6 3.5652 5.2821 -0.0303 11 7 4.2521 5.4304 -1.1573 12 6 4.2128 4.3067 -1.8560 13 7 3.5069 3.4083 -1.2072 14 7 3.0717 4.0089 -0.0178 15 6 2.0870 -0.8078 -1.2019 16 6 3.4684 -1.2734 -0.6951 17 7 3.4275 -1.2420 0.7742 18 6 4.4643 -1.5650 1.6085 19 1 4.3332 -1.5100 2.6791 20 6 5.6839 -1.9627 1.0781 21 7 5.8439 -2.0289 -0.2267 22 14 7.0979 -2.4040 2.2162 23 1 7.0445 -3.8539 2.5328 24 1 8.3869 -2.0902 1.5488 25 1 6.9865 -1.6188 3.4716 26 6 2.0853 -0.8063 1.2007 27 1 -0.3633 0.5029 -0.8961 28 1 -0.3633 -1.0275 0.0126 29 1 -0.3632 0.5247 0.8836 30 1 2.5886 1.6832 -0.7446 31 1 1.4531 4.0518 2.9263 32 1 2.3304 6.3722 2.9213 33 1 3.6833 7.1573 1.0397 34 1 4.6884 4.1520 -2.8132 35 1 1.4481 -1.6635 -1.4207 36 1 2.1930 -0.1700 -2.0793 37 1 4.2433 -0.5986 -1.0588 38 1 3.6692 -2.2880 -1.0389 39 1 6.6962 -2.3065 -0.5972 40 1 2.1554 -0.1714 2.0839 41 1 1.4512 -1.6691 1.4039 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046450885.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:34 Heat of formation + Delta-G solvation = 103.117256 kcal Electronic energy + Delta-G solvation = -26972.407630 eV Core-core repulsion = 23276.023296 eV Total energy + Delta-G solvation = -3696.384334 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.82278 -41.38691 -39.38148 -38.29979 -35.83385 -34.93227 -33.50240 -32.07251 -31.77635 -30.99453 -30.37899 -27.58142 -26.24097 -25.37109 -24.56828 -23.92344 -22.45254 -21.77218 -20.70018 -19.26107 -18.98166 -18.50136 -17.73113 -17.46730 -17.12582 -16.74849 -16.69427 -16.10814 -15.77623 -15.61044 -15.21126 -15.03409 -14.30122 -13.97937 -13.94962 -13.62808 -13.61606 -13.54528 -13.26440 -13.11048 -12.86071 -12.83229 -12.76639 -12.29978 -12.21721 -12.11473 -12.05119 -11.77062 -11.65477 -11.38674 -10.93831 -10.76123 -10.72883 -10.12956 -9.43531 -8.92096 -7.90207 -5.24709 -0.85882 -0.14031 0.85463 1.30003 1.38341 1.40775 1.49028 1.81403 1.96852 2.37683 2.43451 2.84680 3.00998 3.27852 3.46744 3.58084 3.67151 3.79500 3.91569 3.96966 4.06309 4.10513 4.37417 4.54649 4.61491 4.70895 4.78556 4.80046 4.85322 4.94301 4.97149 4.99099 5.07435 5.21531 5.27687 5.29076 5.36871 5.47675 5.55600 5.60424 5.69638 6.14306 6.42848 6.77246 7.01038 7.05847 7.71943 8.36771 9.19928 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.012317 B = 0.004979 C = 0.004438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.813265 B = 5622.807440 C = 6307.160396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.158 3.842 3 N -0.689 5.689 4 C 0.554 3.446 5 O -0.546 6.546 6 C 0.048 3.952 7 C -0.060 4.060 8 C -0.048 4.048 9 C -0.077 4.077 10 C 0.257 3.743 11 N -0.561 5.561 12 C 0.242 3.758 13 N -0.384 5.384 14 N -0.283 5.283 15 C -0.130 4.130 16 C 0.189 3.811 17 N -0.621 5.621 18 C -0.243 4.243 19 H 0.072 0.928 20 C -0.063 4.063 21 N -0.947 5.947 22 Si 0.976 3.024 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.274 1.274 26 C 0.129 3.871 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.413 0.587 31 H 0.190 0.810 32 H 0.216 0.784 33 H 0.197 0.803 34 H 0.258 0.742 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.008 0.992 38 H 0.012 0.988 39 H 0.247 0.753 40 H 0.035 0.965 41 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.298 18.214 0.565 20.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.071 3.929 3 N -0.343 5.343 4 C 0.340 3.660 5 O -0.425 6.425 6 C -0.063 4.063 7 C -0.083 4.083 8 C -0.073 4.073 9 C -0.098 4.098 10 C 0.004 3.996 11 N -0.291 5.291 12 C -0.057 4.057 13 N -0.217 5.217 14 N -0.060 5.060 15 C -0.168 4.168 16 C 0.064 3.936 17 N -0.347 5.347 18 C -0.372 4.372 19 H 0.090 0.910 20 C -0.256 4.256 21 N -0.596 5.596 22 Si 0.804 3.196 23 H -0.208 1.208 24 H -0.218 1.218 25 H -0.199 1.199 26 C 0.003 3.997 27 H 0.090 0.910 28 H 0.102 0.898 29 H 0.082 0.918 30 H 0.255 0.745 31 H 0.207 0.793 32 H 0.232 0.768 33 H 0.215 0.785 34 H 0.274 0.726 35 H 0.118 0.882 36 H 0.103 0.897 37 H 0.026 0.974 38 H 0.031 0.969 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -10.434 17.357 0.630 20.261 hybrid contribution 1.530 -0.695 -0.065 1.682 sum -8.904 16.662 0.565 18.901 Atomic orbital electron populations 1.21918 0.91169 1.03684 1.02897 1.21563 0.94678 0.80357 0.96254 1.46263 1.52842 1.12413 1.22802 1.17842 0.80765 0.84460 0.82975 1.90762 1.40519 1.75974 1.35245 1.20775 0.99736 0.96220 0.89558 1.22008 0.97770 0.93343 0.95214 1.21851 0.92431 0.94153 0.98893 1.21142 0.98873 1.00799 0.89009 1.22649 0.94753 0.85298 0.96888 1.70828 1.26322 1.26875 1.05107 1.26795 0.93267 0.85077 1.00600 1.77967 1.25937 1.22552 0.95206 1.47850 1.32555 1.11600 1.13994 1.23100 0.97256 1.00003 0.96476 1.20871 0.92521 0.97230 0.82995 1.44679 1.08703 1.78862 1.02435 1.19353 0.90678 1.37780 0.89361 0.90987 1.25595 1.00113 1.02304 0.97558 1.70171 1.24247 1.54492 1.10667 0.85126 0.78512 0.78146 0.77856 1.20755 1.21819 1.19931 1.22007 0.86313 0.95265 0.96094 0.91028 0.89845 0.91779 0.74533 0.79332 0.76761 0.78545 0.72634 0.88193 0.89727 0.97416 0.96933 0.94362 0.94621 0.94751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.10 8.62 71.99 0.62 -3.48 16 2 C 0.16 5.93 0.82 5.00 0.00 5.93 16 3 N -0.69 -26.08 5.16 -420.06 -2.17 -28.25 16 4 C 0.55 19.98 7.16 86.60 0.62 20.60 16 5 O -0.55 -20.74 13.06 -4.11 -0.05 -20.79 16 6 C 0.05 1.41 6.80 40.56 0.28 1.68 16 7 C -0.06 -1.14 9.58 22.55 0.22 -0.93 16 8 C -0.05 -0.51 10.04 22.21 0.22 -0.29 16 9 C -0.08 -1.15 10.09 22.44 0.23 -0.92 16 10 C 0.26 6.65 7.88 134.16 1.06 7.70 16 11 N -0.56 -15.66 11.24 -198.18 -2.23 -17.88 16 12 C 0.24 6.68 12.98 180.83 2.35 9.03 16 13 N -0.38 -12.70 9.99 -61.38 -0.61 -13.31 16 14 N -0.28 -8.71 3.93 -181.80 -0.71 -9.42 16 15 C -0.13 -4.90 5.99 31.78 0.19 -4.71 16 16 C 0.19 9.70 5.37 86.73 0.47 10.16 16 17 N -0.62 -33.97 3.39 -692.00 -2.35 -36.32 16 18 C -0.24 -14.52 10.28 84.03 0.86 -13.65 16 19 H 0.07 4.23 7.83 -2.91 -0.02 4.21 16 20 C -0.06 -3.73 5.49 84.86 0.47 -3.26 16 21 N -0.95 -58.74 10.31 21.65 0.22 -58.51 16 22 Si 0.98 47.90 29.55 68.60 2.03 49.93 16 23 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 24 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 25 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 26 C 0.13 5.93 6.11 86.86 0.53 6.46 16 27 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.08 2.19 8.13 -2.39 -0.02 2.17 16 29 H 0.06 2.02 6.45 -2.39 -0.02 2.01 16 30 H 0.41 15.89 5.43 -92.71 -0.50 15.38 16 31 H 0.19 2.97 7.59 -2.91 -0.02 2.95 16 32 H 0.22 -0.06 8.06 -2.91 -0.02 -0.08 16 33 H 0.20 1.46 8.06 -2.91 -0.02 1.44 16 34 H 0.26 4.81 8.06 -2.91 -0.02 4.78 16 35 H 0.10 3.28 8.04 -2.39 -0.02 3.26 16 36 H 0.08 2.86 8.05 -2.39 -0.02 2.84 16 37 H 0.01 0.44 7.38 -2.39 -0.02 0.42 16 38 H 0.01 0.71 7.50 -2.39 -0.02 0.69 16 39 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 40 H 0.04 1.76 6.31 -2.39 -0.02 1.74 16 41 H 0.03 1.53 8.03 -2.39 -0.02 1.51 16 Total: -1.00 -82.28 336.52 2.80 -79.48 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: 0.57 Total: 20.74 kcal Atomic # 6 Polarization: 26.22 SS G_CDS: 8.11 Total: 34.33 kcal Atomic # 7 Polarization: -155.85 SS G_CDS: -7.85 Total: -163.70 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.05 Total: -20.79 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 2.03 Total: 49.93 kcal Total: -82.28 2.80 -79.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046450885.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.602 kcal (2) G-P(sol) polarization free energy of solvation -82.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds