Wall clock time and date at job start Tue Mar 31 2020 10:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 110.88899 * 2 1 4 4 C 1.34777 * 119.99868 * 62.42854 * 3 2 1 5 5 O 1.21712 * 119.99952 * 0.02562 * 4 3 2 6 6 C 1.46580 * 120.00055 * 180.02562 * 4 3 2 7 7 C 1.40652 * 126.53876 * 359.97251 * 6 4 3 8 8 N 1.30694 * 108.72640 * 180.02562 * 7 6 4 9 9 N 1.39902 * 109.51787 * 0.02562 * 8 7 6 10 10 C 1.36321 * 132.15802 * 180.02562 * 9 8 7 11 11 C 1.35755 * 119.15763 * 179.97438 * 10 9 8 12 12 C 1.39965 * 119.35203 * 0.02562 * 11 10 9 13 13 N 1.31493 * 120.10827 * 359.97438 * 12 11 10 14 14 C 1.33376 * 120.85669 * 0.02562 * 13 12 11 15 15 C 1.55163 * 111.03346 * 236.09560 * 2 1 3 16 16 C 1.54323 * 102.93815 * 206.40878 * 15 2 1 17 17 N 1.47028 * 107.27475 * 22.19658 * 16 15 2 18 18 C 1.36935 * 125.64836 * 181.02016 * 17 16 15 19 19 H 1.07997 * 119.99658 * 180.02562 * 18 17 16 20 20 C 1.38811 * 120.00273 * 0.04338 * 18 17 16 21 21 N 1.31626 * 119.99796 * 359.97438 * 20 18 17 22 22 Si 1.86791 * 120.00037 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47308 * 59.99921 * 22 20 18 24 24 H 1.48499 * 109.47150 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47147 * 299.99585 * 22 20 18 26 26 C 1.47424 * 108.69920 * 1.05900 * 17 16 15 27 27 H 1.09007 * 109.47185 * 60.70088 * 1 2 3 28 28 H 1.08994 * 109.47310 * 180.69889 * 1 2 3 29 29 H 1.08999 * 109.47281 * 300.70048 * 1 2 3 30 30 H 0.96997 * 120.00320 * 242.43000 * 3 2 1 31 31 H 1.07996 * 125.63549 * 0.02562 * 7 6 4 32 32 H 1.08008 * 120.42042 * 0.26465 * 10 9 8 33 33 H 1.07998 * 120.32409 * 179.97438 * 11 10 9 34 34 H 1.08003 * 119.94430 * 180.02562 * 12 11 10 35 35 H 1.08989 * 110.72292 * 324.77274 * 15 2 1 36 36 H 1.09000 * 110.71737 * 88.05213 * 15 2 1 37 37 H 1.08999 * 109.88663 * 262.77326 * 16 15 2 38 38 H 1.09005 * 109.87860 * 141.61253 * 16 15 2 39 39 H 0.96995 * 119.99801 * 180.02562 * 21 20 18 40 40 H 1.09003 * 110.36353 * 217.03273 * 26 17 16 41 41 H 1.08996 * 110.46259 * 94.75712 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.7879 2.1909 1.0347 5 8 1.1155 1.7961 1.9692 6 6 2.3100 3.5605 1.0344 7 6 3.0973 4.1565 0.0327 8 7 3.3680 5.3849 0.3871 9 7 2.7786 5.6544 1.6270 10 6 2.7658 6.7696 2.4109 11 6 2.0955 6.7407 3.5911 12 6 1.4342 5.5687 3.9761 13 7 1.4644 4.5086 3.1988 14 6 2.1210 4.5300 2.0380 15 6 2.0869 -0.8078 -1.2020 16 6 3.4682 -1.2733 -0.6952 17 7 3.4275 -1.2421 0.7741 18 6 4.4642 -1.5651 1.6083 19 1 4.3331 -1.5102 2.6789 20 6 5.6838 -1.9628 1.0780 21 7 5.8436 -2.0298 -0.2268 22 14 7.0978 -2.4041 2.2159 23 1 6.6976 -3.5394 3.0856 24 1 8.2808 -2.7938 1.4074 25 1 7.4391 -1.2306 3.0596 26 6 2.0852 -0.8063 1.2006 27 1 -0.3634 0.5029 -0.8963 28 1 -0.3633 -1.0275 0.0125 29 1 -0.3634 0.5247 0.8836 30 1 2.5885 1.6832 -0.7446 31 1 3.4240 3.6779 -0.8786 32 1 3.2784 7.6662 2.0949 33 1 2.0733 7.6133 4.2271 34 1 0.8977 5.5354 4.9128 35 1 1.4481 -1.6634 -1.4208 36 1 2.1929 -0.1699 -2.0794 37 1 4.2432 -0.5986 -1.0590 38 1 3.6664 -2.2885 -1.0391 39 1 6.6957 -2.3080 -0.5974 40 1 2.1553 -0.1715 2.0839 41 1 1.4511 -1.6692 1.4038 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046533936.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:26 Heat of formation + Delta-G solvation = 122.405175 kcal Electronic energy + Delta-G solvation = -26415.868055 eV Core-core repulsion = 22720.320107 eV Total energy + Delta-G solvation = -3695.547947 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.57393 -39.51424 -38.22465 -36.92965 -34.19752 -33.76496 -31.92608 -31.26901 -30.16053 -29.10092 -28.49660 -25.55421 -25.11989 -24.27087 -23.38367 -22.57270 -20.64036 -20.03630 -18.91435 -18.46083 -17.46035 -17.13553 -16.57000 -16.32385 -15.91383 -15.30958 -14.54796 -14.50808 -14.26594 -13.87721 -13.74114 -13.58653 -13.22200 -13.05479 -12.82743 -12.60887 -11.96352 -11.79183 -11.72933 -11.64840 -11.52633 -11.34137 -10.81103 -10.79088 -10.25937 -10.23702 -10.02318 -9.98117 -9.87051 -9.84189 -9.55171 -9.08458 -8.52157 -8.39142 -8.05732 -6.68905 -5.61594 -2.92329 0.20468 0.57552 1.74141 2.11113 3.05704 3.47064 3.50585 3.52443 3.56337 3.64305 3.91096 4.00191 4.07936 4.55460 4.59396 4.75116 4.97685 5.01189 5.16732 5.20897 5.50210 5.54802 5.62864 5.69991 5.75010 5.84324 6.03484 6.13801 6.21556 6.27130 6.29069 6.48458 6.52051 6.68332 6.83800 6.99202 7.12914 7.33380 7.44926 7.64526 7.66897 7.89483 8.14420 8.36470 8.88260 9.33748 9.93912 10.60647 11.50587 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013599 B = 0.004203 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.470027 B = 6659.765654 C = 7564.776189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.161 3.839 3 N -0.701 5.701 4 C 0.598 3.402 5 O -0.529 6.529 6 C -0.274 4.274 7 C 0.130 3.870 8 N -0.313 5.313 9 N -0.309 5.309 10 C 0.164 3.836 11 C -0.225 4.225 12 C 0.179 3.821 13 N -0.435 5.435 14 C 0.313 3.687 15 C -0.146 4.146 16 C 0.178 3.822 17 N -0.603 5.603 18 C -0.217 4.217 19 H 0.075 0.925 20 C -0.011 4.011 21 N -0.926 5.926 22 Si 0.909 3.091 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.287 1.287 26 C 0.131 3.869 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.393 0.607 31 H 0.205 0.795 32 H 0.181 0.819 33 H 0.169 0.831 34 H 0.183 0.817 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.045 0.955 38 H 0.042 0.958 39 H 0.250 0.750 40 H 0.057 0.943 41 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.450 19.175 1.400 21.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.074 3.926 3 N -0.351 5.351 4 C 0.384 3.616 5 O -0.406 6.406 6 C -0.290 4.290 7 C -0.051 4.051 8 N -0.135 5.135 9 N -0.078 5.078 10 C 0.028 3.972 11 C -0.249 4.249 12 C -0.005 4.005 13 N -0.146 5.146 14 C 0.082 3.918 15 C -0.185 4.185 16 C 0.054 3.946 17 N -0.329 5.329 18 C -0.346 4.346 19 H 0.093 0.907 20 C -0.206 4.206 21 N -0.574 5.574 22 Si 0.740 3.260 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.214 1.214 26 C 0.004 3.996 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.227 0.773 31 H 0.222 0.778 32 H 0.199 0.801 33 H 0.187 0.813 34 H 0.200 0.800 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -9.434 18.927 1.665 21.213 hybrid contribution 1.311 0.041 0.206 1.327 sum -8.124 18.968 1.871 20.719 Atomic orbital electron populations 1.21989 0.94531 1.01959 1.02257 1.21416 0.92404 0.80676 0.98059 1.45510 1.54756 1.12587 1.22278 1.16613 0.79851 0.82744 0.82373 1.90780 1.39299 1.75944 1.34547 1.19646 1.15299 0.96974 0.97088 1.24192 0.92006 0.90416 0.98517 1.77578 1.23438 1.18506 0.93991 1.47048 1.34420 1.10494 1.15874 1.22113 0.96136 0.89694 0.89295 1.21916 1.03119 1.02457 0.97426 1.23621 0.92016 0.86839 0.97974 1.68341 1.16619 1.28088 1.01513 1.20390 0.92250 0.86863 0.92325 1.23223 1.00480 0.98874 0.95932 1.21138 0.89987 0.99775 0.83743 1.44430 1.07838 1.78833 1.01784 1.19025 0.89403 1.37167 0.88984 0.90737 1.24730 0.97645 1.02273 0.95966 1.69939 1.24063 1.54334 1.09105 0.86233 0.82001 0.78238 0.79536 1.21246 1.21678 1.21429 1.21901 0.87357 0.94831 0.95529 0.93253 0.91996 0.90957 0.77342 0.77815 0.80139 0.81309 0.80023 0.90951 0.91822 0.93717 0.93959 0.93948 0.92463 0.95865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 8.62 37.16 0.32 -2.10 16 2 C 0.16 3.01 0.82 -129.67 -0.11 2.90 16 3 N -0.70 -12.31 5.16 -46.93 -0.24 -12.55 16 4 C 0.60 11.39 7.17 -12.90 -0.09 11.29 16 5 O -0.53 -11.64 13.50 5.18 0.07 -11.57 16 6 C -0.27 -4.59 6.17 -104.65 -0.65 -5.23 16 7 C 0.13 1.78 11.44 -17.13 -0.20 1.58 16 8 N -0.31 -4.33 12.58 30.76 0.39 -3.94 16 9 N -0.31 -4.03 3.86 -11.97 -0.05 -4.07 16 10 C 0.16 1.32 11.29 -16.45 -0.19 1.13 16 11 C -0.23 -1.35 10.05 -39.82 -0.40 -1.75 16 12 C 0.18 1.59 11.28 -17.05 -0.19 1.40 16 13 N -0.44 -6.46 10.26 -12.00 -0.12 -6.59 16 14 C 0.31 4.96 7.74 -155.84 -1.21 3.75 16 15 C -0.15 -2.67 5.99 -24.89 -0.15 -2.82 16 16 C 0.18 4.31 5.36 -3.06 -0.02 4.29 16 17 N -0.60 -16.01 3.39 -170.07 -0.58 -16.59 16 18 C -0.22 -6.36 10.28 -15.06 -0.15 -6.51 16 19 H 0.07 2.17 7.83 -52.49 -0.41 1.76 16 20 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 21 N -0.93 -27.52 10.31 55.49 0.57 -26.95 16 22 Si 0.91 23.00 29.55 -169.99 -5.02 17.98 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 C 0.13 3.02 6.11 -2.53 -0.02 3.00 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.93 8.13 -51.93 -0.42 0.51 16 29 H 0.07 1.30 6.45 -51.93 -0.33 0.96 16 30 H 0.39 5.92 7.41 -40.82 -0.30 5.62 16 31 H 0.21 2.07 7.46 -52.49 -0.39 1.68 16 32 H 0.18 0.77 8.06 -52.48 -0.42 0.35 16 33 H 0.17 0.25 8.06 -52.49 -0.42 -0.17 16 34 H 0.18 0.90 8.06 -52.48 -0.42 0.48 16 35 H 0.07 1.23 8.04 -51.94 -0.42 0.82 16 36 H 0.06 0.99 8.05 -51.93 -0.42 0.57 16 37 H 0.04 1.17 7.38 -51.93 -0.38 0.79 16 38 H 0.04 1.13 7.51 -51.93 -0.39 0.75 16 39 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.06 1.45 6.31 -51.93 -0.33 1.13 16 41 H 0.02 0.54 8.03 -51.93 -0.42 0.12 16 LS Contribution 340.98 15.07 5.14 5.14 Total: -1.00 -38.55 340.98 -8.02 -46.57 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -5.04 Total: 2.04 kcal Atomic # 6 Polarization: 13.67 SS G_CDS: -3.14 Total: 10.53 kcal Atomic # 7 Polarization: -70.66 SS G_CDS: -0.03 Total: -70.69 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.07 Total: -11.57 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.98 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -38.55 -8.02 -46.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046533936.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.976 kcal (2) G-P(sol) polarization free energy of solvation -38.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds