Wall clock time and date at job start Tue Mar 31 2020 10:34:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 N 1.46497 * 110.89183 * 2 1
4 4 C 1.34782 * 119.99822 * 297.57543 * 3 2 1
5 5 O 1.21723 * 119.99841 * 359.97438 * 4 3 2
6 6 C 1.46577 * 119.99861 * 179.97438 * 4 3 2
7 7 C 1.40644 * 126.54385 * 0.02776 * 6 4 3
8 8 N 1.30699 * 108.72833 * 180.02562 * 7 6 4
9 9 N 1.39898 * 109.51876 * 359.97438 * 8 7 6
10 10 C 1.36320 * 132.15478 * 180.02562 * 9 8 7
11 11 C 1.35759 * 119.15297 * 179.97438 * 10 9 8
12 12 C 1.39963 * 119.35395 * 0.02562 * 11 10 9
13 13 N 1.31497 * 120.11203 * 359.97438 * 12 11 10
14 14 C 1.33392 * 120.84903 * 359.73982 * 13 12 11
15 15 C 1.55157 * 111.00515 * 123.92556 * 2 1 3
16 16 C 1.54334 * 103.02095 * 153.37497 * 15 2 1
17 17 N 1.47014 * 107.26782 * 338.14225 * 16 15 2
18 18 C 1.36945 * 125.64902 * 178.84833 * 17 16 15
19 19 H 1.07997 * 119.99756 * 179.68982 * 18 17 16
20 20 C 1.38805 * 119.99878 * 359.68887 * 18 17 16
21 21 N 1.31624 * 120.00257 * 0.02562 * 20 18 17
22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17
23 23 H 1.48496 * 109.47187 * 179.97438 * 22 20 18
24 24 H 1.48494 * 109.47141 * 300.00154 * 22 20 18
25 25 H 1.48498 * 109.47018 * 60.00200 * 22 20 18
26 26 C 1.47428 * 108.70537 * 358.58102 * 17 16 15
27 27 H 1.09002 * 109.47666 * 182.43089 * 1 2 3
28 28 H 1.09008 * 109.47143 * 302.42655 * 1 2 3
29 29 H 1.08999 * 109.47170 * 62.42125 * 1 2 3
30 30 H 0.96991 * 120.00253 * 117.57206 * 3 2 1
31 31 H 1.08008 * 125.63117 * 359.97407 * 7 6 4
32 32 H 1.07996 * 120.42441 * 359.97438 * 10 9 8
33 33 H 1.07997 * 120.32083 * 179.97438 * 11 10 9
34 34 H 1.08000 * 119.94459 * 179.97438 * 12 11 10
35 35 H 1.08998 * 110.71770 * 271.93665 * 15 2 1
36 36 H 1.09002 * 110.71853 * 35.03099 * 15 2 1
37 37 H 1.08998 * 109.99457 * 218.65928 * 16 15 2
38 38 H 1.09007 * 109.77698 * 97.49747 * 16 15 2
39 39 H 0.97001 * 119.99885 * 179.97438 * 21 20 18
40 40 H 1.09003 * 110.36579 * 143.19056 * 26 17 16
41 41 H 1.08993 * 110.36917 * 265.41008 * 26 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 7 2.0523 1.3687 0.0000
4 6 1.7878 2.1909 -1.0347
5 8 1.1153 1.7961 -1.9693
6 6 2.3101 3.5605 -1.0344
7 6 3.0973 4.1564 -0.0328
8 7 3.3672 5.3853 -0.3868
9 7 2.7771 5.6550 -1.6262
10 6 2.7640 6.7703 -2.4099
11 6 2.0938 6.7414 -3.5902
12 6 1.4321 5.5696 -3.9749
13 7 1.4625 4.5093 -3.1978
14 6 2.1238 4.5289 -2.0395
15 6 2.0861 -0.8084 1.2019
16 6 3.4656 -1.2798 0.6953
17 7 3.4270 -1.2429 -0.7738
18 6 4.4639 -1.5663 -1.6079
19 1 4.3330 -1.5113 -2.6785
20 6 5.6830 -1.9647 -1.0772
21 7 5.8424 -2.0322 0.2276
22 14 7.0972 -2.4066 -2.2150
23 1 8.2802 -2.7959 -1.4061
24 1 6.6966 -3.5413 -3.0850
25 1 7.4393 -1.2330 -3.0582
26 6 2.0851 -0.8063 -1.2007
27 1 -0.3634 -1.0267 0.0436
28 1 -0.3634 0.5511 0.8675
29 1 -0.3633 0.4758 -0.9109
30 1 2.5885 1.6831 0.7446
31 1 3.4241 3.6778 0.8786
32 1 3.2802 7.6654 -2.0959
33 1 2.0708 7.6143 -4.2256
34 1 0.8957 5.5362 -4.9117
35 1 2.1921 -0.1708 2.0795
36 1 1.4450 -1.6619 1.4223
37 1 3.6600 -2.2969 1.0357
38 1 4.2424 -0.6090 1.0627
39 1 6.6943 -2.3110 0.5983
40 1 2.1559 -0.1713 -2.0838
41 1 1.4523 -1.6699 -1.4050
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001046533937.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:34:29
Heat of formation + Delta-G solvation = 122.317118 kcal
Electronic energy + Delta-G solvation = -26414.094573 eV
Core-core repulsion = 22718.542808 eV
Total energy + Delta-G solvation = -3695.551766 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.144 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-42.57383 -39.50936 -38.22361 -36.92734 -34.19689 -33.76634 -31.92583 -31.26847
-30.16048 -29.10175 -28.49267 -25.55474 -25.11969 -24.27108 -23.38422 -22.57232
-20.64049 -20.03700 -18.91471 -18.45992 -17.46051 -17.13469 -16.56906 -16.32399
-15.91211 -15.30899 -14.54806 -14.50845 -14.26607 -13.87670 -13.74121 -13.58367
-13.22101 -13.05524 -12.82747 -12.60311 -11.97556 -11.78420 -11.72383 -11.64758
-11.52941 -11.34392 -10.81014 -10.79239 -10.26110 -10.23680 -10.02369 -9.98121
-9.86491 -9.84156 -9.55182 -9.08693 -8.52163 -8.39220 -8.05751 -6.68874
-5.61570 -2.92367 0.20462 0.57553 1.74156 2.11151 3.05677 3.47068
3.50590 3.52449 3.56401 3.64332 3.90978 4.00279 4.07968 4.55455
4.59369 4.75102 4.97707 5.01227 5.16729 5.20948 5.50206 5.54850
5.62936 5.70017 5.74824 5.84223 6.03499 6.13706 6.21616 6.26934
6.29398 6.48516 6.52102 6.68299 6.83650 6.99225 7.12942 7.33333
7.44868 7.64551 7.66932 7.89493 8.14509 8.36514 8.88362 9.33766
9.93934 10.60612 11.50568
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.013605 B = 0.004201 C = 0.003699
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2057.582138 B = 6663.327183 C = 7567.864007
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C 0.161 3.839
3 N -0.701 5.701
4 C 0.598 3.402
5 O -0.529 6.529
6 C -0.274 4.274
7 C 0.130 3.870
8 N -0.313 5.313
9 N -0.309 5.309
10 C 0.164 3.836
11 C -0.225 4.225
12 C 0.179 3.821
13 N -0.435 5.435
14 C 0.313 3.687
15 C -0.146 4.146
16 C 0.179 3.821
17 N -0.603 5.603
18 C -0.217 4.217
19 H 0.075 0.925
20 C -0.011 4.011
21 N -0.926 5.926
22 Si 0.909 3.091
23 H -0.291 1.291
24 H -0.286 1.286
25 H -0.287 1.287
26 C 0.131 3.869
27 H 0.061 0.939
28 H 0.048 0.952
29 H 0.071 0.929
30 H 0.393 0.607
31 H 0.205 0.795
32 H 0.181 0.819
33 H 0.169 0.831
34 H 0.183 0.817
35 H 0.063 0.937
36 H 0.071 0.929
37 H 0.042 0.958
38 H 0.045 0.955
39 H 0.250 0.750
40 H 0.057 0.943
41 H 0.024 0.976
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.443 19.169 -1.406 21.415
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C 0.075 3.925
3 N -0.351 5.351
4 C 0.384 3.616
5 O -0.406 6.406
6 C -0.290 4.290
7 C -0.051 4.051
8 N -0.135 5.135
9 N -0.078 5.078
10 C 0.028 3.972
11 C -0.249 4.249
12 C -0.005 4.005
13 N -0.146 5.146
14 C 0.082 3.918
15 C -0.185 4.185
16 C 0.054 3.946
17 N -0.329 5.329
18 C -0.346 4.346
19 H 0.093 0.907
20 C -0.206 4.206
21 N -0.574 5.574
22 Si 0.740 3.260
23 H -0.217 1.217
24 H -0.212 1.212
25 H -0.214 1.214
26 C 0.004 3.996
27 H 0.080 0.920
28 H 0.068 0.932
29 H 0.090 0.910
30 H 0.227 0.773
31 H 0.222 0.778
32 H 0.199 0.801
33 H 0.187 0.813
34 H 0.200 0.800
35 H 0.082 0.918
36 H 0.090 0.910
37 H 0.060 0.940
38 H 0.063 0.937
39 H 0.061 0.939
40 H 0.076 0.924
41 H 0.041 0.959
Dipole moment (debyes) X Y Z Total
from point charges -9.431 18.925 -1.668 21.211
hybrid contribution 1.312 0.036 -0.207 1.329
sum -8.120 18.961 -1.876 20.712
Atomic orbital electron populations
1.21989 0.94524 1.01782 1.02400 1.21407 0.92400 0.80681 0.98046
1.45510 1.54762 1.12573 1.22283 1.16617 0.79851 0.82739 0.82377
1.90784 1.39296 1.75943 1.34549 1.19643 1.15347 0.97039 0.96970
1.24193 0.91991 0.90421 0.98527 1.77578 1.23424 1.18488 0.94032
1.47044 1.34544 1.10406 1.15835 1.22112 0.96143 0.89710 0.89274
1.21916 1.03149 1.02445 0.97405 1.23621 0.92039 0.86860 0.97936
1.68352 1.16500 1.28099 1.01603 1.20396 0.92273 0.86847 0.92315
1.23225 1.00495 0.98858 0.95932 1.21135 0.90027 0.99720 0.83750
1.44432 1.07886 1.78789 1.01790 1.19025 0.89403 1.37167 0.88986
0.90736 1.24729 0.97642 1.02269 0.95962 1.69940 1.24081 1.54320
1.09099 0.86234 0.82007 0.78240 0.79538 1.21677 1.21243 1.21431
1.21902 0.87359 0.94838 0.95525 0.92019 0.93245 0.90975 0.77342
0.77813 0.80139 0.81309 0.80024 0.91830 0.90989 0.93992 0.93681
0.93948 0.92448 0.95867
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.41 8.58 37.15 0.32 -2.09 16
2 C 0.16 3.01 0.82 -129.67 -0.11 2.90 16
3 N -0.70 -12.31 5.17 -46.94 -0.24 -12.55 16
4 C 0.60 11.39 7.17 -12.90 -0.09 11.29 16
5 O -0.53 -11.64 13.54 5.17 0.07 -11.57 16
6 C -0.27 -4.59 6.17 -104.66 -0.65 -5.23 16
7 C 0.13 1.78 11.44 -17.13 -0.20 1.58 16
8 N -0.31 -4.33 12.58 30.77 0.39 -3.94 16
9 N -0.31 -4.03 3.86 -11.97 -0.05 -4.07 16
10 C 0.16 1.32 11.29 -16.44 -0.19 1.13 16
11 C -0.23 -1.35 10.05 -39.82 -0.40 -1.75 16
12 C 0.18 1.59 11.28 -17.05 -0.19 1.40 16
13 N -0.44 -6.46 10.26 -12.00 -0.12 -6.59 16
14 C 0.31 4.96 7.74 -155.83 -1.21 3.75 16
15 C -0.15 -2.67 5.99 -24.89 -0.15 -2.82 16
16 C 0.18 4.31 5.37 -3.06 -0.02 4.30 16
17 N -0.60 -16.01 3.39 -170.06 -0.58 -16.59 16
18 C -0.22 -6.36 10.28 -15.06 -0.15 -6.51 16
19 H 0.07 2.17 7.83 -52.49 -0.41 1.76 16
20 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16
21 N -0.93 -27.52 10.31 55.49 0.57 -26.95 16
22 Si 0.91 23.00 29.55 -169.99 -5.02 17.97 16
23 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16
24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16
25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16
26 C 0.13 3.02 6.10 -2.52 -0.02 3.00 16
27 H 0.06 0.93 8.11 -51.93 -0.42 0.50 16
28 H 0.05 0.71 8.14 -51.92 -0.42 0.28 16
29 H 0.07 1.29 6.53 -51.93 -0.34 0.95 16
30 H 0.39 5.92 7.41 -40.82 -0.30 5.62 16
31 H 0.21 2.07 7.46 -52.48 -0.39 1.68 16
32 H 0.18 0.77 8.06 -52.49 -0.42 0.35 16
33 H 0.17 0.25 8.06 -52.49 -0.42 -0.17 16
34 H 0.18 0.90 8.06 -52.49 -0.42 0.48 16
35 H 0.06 0.99 8.05 -51.93 -0.42 0.57 16
36 H 0.07 1.23 8.01 -51.93 -0.42 0.81 16
37 H 0.04 1.13 7.52 -51.93 -0.39 0.74 16
38 H 0.05 1.18 7.37 -51.93 -0.38 0.80 16
39 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16
40 H 0.06 1.46 6.31 -51.93 -0.33 1.13 16
41 H 0.02 0.54 8.04 -51.93 -0.42 0.12 16
LS Contribution 341.03 15.07 5.14 5.14
Total: -1.00 -38.54 341.03 -8.03 -46.57
By element:
Atomic # 1 Polarization: 7.07 SS G_CDS: -5.04 Total: 2.03 kcal
Atomic # 6 Polarization: 13.69 SS G_CDS: -3.14 Total: 10.55 kcal
Atomic # 7 Polarization: -70.66 SS G_CDS: -0.03 Total: -70.69 kcal
Atomic # 8 Polarization: -11.64 SS G_CDS: 0.07 Total: -11.57 kcal
Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.97 kcal
Total LS contribution 5.14 Total: 5.14 kcal
Total: -38.54 -8.03 -46.57 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001046533937.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 168.886 kcal
(2) G-P(sol) polarization free energy of solvation -38.544 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.342 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.569 kcal
(6) G-S(sol) free energy of system = (1) + (5) 122.317 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds