Wall clock time and date at job start Tue Mar 31 2020 10:34:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 N 1.46497 * 110.89183 * 2 1
4 4 C 1.34782 * 119.99822 * 297.57543 * 3 2 1
5 5 O 1.21723 * 119.99841 * 359.97438 * 4 3 2
6 6 C 1.46577 * 119.99861 * 179.97438 * 4 3 2
7 7 C 1.40644 * 126.54385 * 0.02776 * 6 4 3
8 8 N 1.30699 * 108.72833 * 180.02562 * 7 6 4
9 9 N 1.39898 * 109.51876 * 359.97438 * 8 7 6
10 10 C 1.36320 * 132.15478 * 180.02562 * 9 8 7
11 11 C 1.35759 * 119.15297 * 179.97438 * 10 9 8
12 12 C 1.39963 * 119.35395 * 0.02562 * 11 10 9
13 13 N 1.31497 * 120.11203 * 359.97438 * 12 11 10
14 14 C 1.33392 * 120.84903 * 359.73982 * 13 12 11
15 15 C 1.55157 * 111.00515 * 123.92556 * 2 1 3
16 16 C 1.54334 * 103.02095 * 153.37497 * 15 2 1
17 17 N 1.47014 * 107.26782 * 338.14225 * 16 15 2
18 18 C 1.36945 * 125.64902 * 178.84833 * 17 16 15
19 19 H 1.07997 * 119.99756 * 179.68982 * 18 17 16
20 20 C 1.38805 * 119.99878 * 359.68887 * 18 17 16
21 21 N 1.31624 * 120.00257 * 0.02562 * 20 18 17
22 22 Si 1.86803 * 119.99929 * 179.97438 * 20 18 17
23 23 H 1.48496 * 109.47187 * 179.97438 * 22 20 18
24 24 H 1.48494 * 109.47141 * 300.00154 * 22 20 18
25 25 H 1.48498 * 109.47018 * 60.00200 * 22 20 18
26 26 C 1.47428 * 108.70537 * 358.58102 * 17 16 15
27 27 H 1.09002 * 109.47666 * 182.43089 * 1 2 3
28 28 H 1.09008 * 109.47143 * 302.42655 * 1 2 3
29 29 H 1.08999 * 109.47170 * 62.42125 * 1 2 3
30 30 H 0.96991 * 120.00253 * 117.57206 * 3 2 1
31 31 H 1.08008 * 125.63117 * 359.97407 * 7 6 4
32 32 H 1.07996 * 120.42441 * 359.97438 * 10 9 8
33 33 H 1.07997 * 120.32083 * 179.97438 * 11 10 9
34 34 H 1.08000 * 119.94459 * 179.97438 * 12 11 10
35 35 H 1.08998 * 110.71770 * 271.93665 * 15 2 1
36 36 H 1.09002 * 110.71853 * 35.03099 * 15 2 1
37 37 H 1.08998 * 109.99457 * 218.65928 * 16 15 2
38 38 H 1.09007 * 109.77698 * 97.49747 * 16 15 2
39 39 H 0.97001 * 119.99885 * 179.97438 * 21 20 18
40 40 H 1.09003 * 110.36579 * 143.19056 * 26 17 16
41 41 H 1.08993 * 110.36917 * 265.41008 * 26 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 7 2.0523 1.3687 0.0000
4 6 1.7878 2.1909 -1.0347
5 8 1.1153 1.7961 -1.9693
6 6 2.3101 3.5605 -1.0344
7 6 3.0973 4.1564 -0.0328
8 7 3.3672 5.3853 -0.3868
9 7 2.7771 5.6550 -1.6262
10 6 2.7640 6.7703 -2.4099
11 6 2.0938 6.7414 -3.5902
12 6 1.4321 5.5696 -3.9749
13 7 1.4625 4.5093 -3.1978
14 6 2.1238 4.5289 -2.0395
15 6 2.0861 -0.8084 1.2019
16 6 3.4656 -1.2798 0.6953
17 7 3.4270 -1.2429 -0.7738
18 6 4.4639 -1.5663 -1.6079
19 1 4.3330 -1.5113 -2.6785
20 6 5.6830 -1.9647 -1.0772
21 7 5.8424 -2.0322 0.2276
22 14 7.0972 -2.4066 -2.2150
23 1 8.2802 -2.7959 -1.4061
24 1 6.6966 -3.5413 -3.0850
25 1 7.4393 -1.2330 -3.0582
26 6 2.0851 -0.8063 -1.2007
27 1 -0.3634 -1.0267 0.0436
28 1 -0.3634 0.5511 0.8675
29 1 -0.3633 0.4758 -0.9109
30 1 2.5885 1.6831 0.7446
31 1 3.4241 3.6778 0.8786
32 1 3.2802 7.6654 -2.0959
33 1 2.0708 7.6143 -4.2256
34 1 0.8957 5.5362 -4.9117
35 1 2.1921 -0.1708 2.0795
36 1 1.4450 -1.6619 1.4223
37 1 3.6600 -2.2969 1.0357
38 1 4.2424 -0.6090 1.0627
39 1 6.6943 -2.3110 0.5983
40 1 2.1559 -0.1713 -2.0838
41 1 1.4523 -1.6699 -1.4050
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001046533937.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:34:28
Heat of formation + Delta-G solvation = 93.625696 kcal
Electronic energy + Delta-G solvation = -26415.338727 eV
Core-core repulsion = 22718.542808 eV
Total energy + Delta-G solvation = -3696.795919 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.144 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-43.48401 -40.97511 -39.17888 -38.51833 -35.59338 -35.07701 -33.62161 -32.22763
-31.78514 -30.50135 -29.95909 -27.48724 -25.89934 -25.63213 -24.88181 -23.60692
-22.23640 -21.59090 -20.36470 -19.53472 -18.88256 -18.29028 -17.89566 -17.27956
-16.96991 -16.78368 -16.57941 -15.83706 -15.52509 -15.31269 -15.20328 -14.76203
-14.56440 -14.09048 -13.86937 -13.83005 -13.73866 -13.49635 -13.37319 -13.03919
-12.83220 -12.73897 -12.66562 -12.28641 -12.09956 -12.02149 -11.93313 -11.66485
-11.48305 -10.81506 -10.69304 -10.67841 -10.56005 -9.89351 -9.09904 -8.82711
-7.84435 -5.17468 -0.57817 -0.21286 0.91539 1.04823 1.41477 1.44626
1.51158 2.16671 2.35132 2.48478 2.67233 2.84972 3.00615 3.33018
3.52694 3.62846 3.75830 3.86004 3.97232 4.10405 4.10780 4.24816
4.34186 4.50405 4.57436 4.69220 4.74380 4.89852 4.93034 4.98059
5.00442 5.07994 5.10157 5.14986 5.40614 5.42387 5.44027 5.69793
5.76529 5.85063 6.17827 6.22140 6.61864 6.81048 7.13690 7.51322
7.79538 8.44330 9.25134
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.013605 B = 0.004201 C = 0.003699
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2057.582138 B = 6663.327183 C = 7567.864007
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C 0.171 3.829
3 N -0.698 5.698
4 C 0.595 3.405
5 O -0.571 6.571
6 C -0.328 4.328
7 C 0.137 3.863
8 N -0.328 5.328
9 N -0.312 5.312
10 C 0.148 3.852
11 C -0.196 4.196
12 C 0.185 3.815
13 N -0.500 5.500
14 C 0.303 3.697
15 C -0.127 4.127
16 C 0.186 3.814
17 N -0.621 5.621
18 C -0.243 4.243
19 H 0.063 0.937
20 C -0.057 4.057
21 N -0.944 5.944
22 Si 0.972 3.028
23 H -0.286 1.286
24 H -0.279 1.279
25 H -0.285 1.285
26 C 0.129 3.871
27 H 0.076 0.924
28 H 0.076 0.924
29 H 0.051 0.949
30 H 0.405 0.595
31 H 0.229 0.771
32 H 0.222 0.778
33 H 0.228 0.772
34 H 0.220 0.780
35 H 0.100 0.900
36 H 0.092 0.908
37 H 0.009 0.991
38 H 0.019 0.981
39 H 0.248 0.752
40 H 0.026 0.974
41 H 0.023 0.977
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.763 21.913 -1.690 24.050
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C 0.084 3.916
3 N -0.348 5.348
4 C 0.384 3.616
5 O -0.452 6.452
6 C -0.345 4.345
7 C -0.044 4.044
8 N -0.149 5.149
9 N -0.081 5.081
10 C 0.014 3.986
11 C -0.218 4.218
12 C 0.006 3.994
13 N -0.213 5.213
14 C 0.069 3.931
15 C -0.165 4.165
16 C 0.061 3.939
17 N -0.347 5.347
18 C -0.372 4.372
19 H 0.081 0.919
20 C -0.251 4.251
21 N -0.592 5.592
22 Si 0.801 3.199
23 H -0.211 1.211
24 H -0.205 1.205
25 H -0.212 1.212
26 C 0.002 3.998
27 H 0.094 0.906
28 H 0.095 0.905
29 H 0.070 0.930
30 H 0.240 0.760
31 H 0.245 0.755
32 H 0.239 0.761
33 H 0.244 0.756
34 H 0.236 0.764
35 H 0.118 0.882
36 H 0.110 0.890
37 H 0.027 0.973
38 H 0.037 0.963
39 H 0.057 0.943
40 H 0.045 0.955
41 H 0.040 0.960
Dipole moment (debyes) X Y Z Total
from point charges -9.762 21.725 -1.953 23.898
hybrid contribution 1.383 -0.620 -0.356 1.556
sum -8.380 21.106 -2.309 22.826
Atomic orbital electron populations
1.21897 0.92173 1.02948 1.02591 1.21294 0.93947 0.80767 0.95634
1.45450 1.54859 1.11927 1.22600 1.17001 0.79122 0.83730 0.81774
1.90736 1.41384 1.77011 1.36029 1.19550 1.18773 0.96628 0.99500
1.24504 0.90928 0.90265 0.98680 1.77474 1.24190 1.18424 0.94854
1.47281 1.33937 1.11059 1.15780 1.23181 0.96487 0.89575 0.89372
1.22578 0.99770 1.02834 0.96634 1.24528 0.90564 0.86414 0.97913
1.68382 1.19008 1.31303 1.02592 1.20506 0.92384 0.87584 0.92611
1.23104 0.96815 0.99981 0.96628 1.20945 0.93022 0.97367 0.82516
1.44680 1.08487 1.78750 1.02762 1.19261 0.90899 1.37873 0.89175
0.91860 1.25482 0.99738 1.02295 0.97537 1.70136 1.24289 1.54503
1.10317 0.85256 0.78919 0.77958 0.77810 1.21128 1.20520 1.21168
1.21979 0.86283 0.94875 0.96628 0.90554 0.90528 0.93036 0.75980
0.75461 0.76138 0.75555 0.76392 0.88172 0.88960 0.97301 0.96284
0.94284 0.95523 0.95966
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.34 8.58 71.98 0.62 -3.73 16
2 C 0.17 6.38 0.82 5.00 0.00 6.38 16
3 N -0.70 -24.95 5.17 -420.61 -2.17 -27.13 16
4 C 0.59 23.76 7.17 86.42 0.62 24.38 16
5 O -0.57 -26.72 13.54 -4.42 -0.06 -26.78 16
6 C -0.33 -11.43 6.17 -19.89 -0.12 -11.55 16
7 C 0.14 3.82 11.44 85.45 0.98 4.80 16
8 N -0.33 -8.89 12.58 -56.58 -0.71 -9.60 16
9 N -0.31 -7.80 3.86 -191.78 -0.74 -8.54 16
10 C 0.15 1.89 11.29 83.42 0.94 2.84 16
11 C -0.20 -1.47 10.05 22.11 0.22 -1.24 16
12 C 0.19 2.83 11.28 85.16 0.96 3.79 16
13 N -0.50 -14.91 10.26 -191.87 -1.97 -16.88 16
14 C 0.30 9.76 7.74 133.98 1.04 10.79 16
15 C -0.13 -4.48 5.99 31.79 0.19 -4.29 16
16 C 0.19 9.22 5.37 86.73 0.47 9.68 16
17 N -0.62 -34.27 3.39 -691.96 -2.35 -36.62 16
18 C -0.24 -14.78 10.28 84.03 0.86 -13.92 16
19 H 0.06 3.87 7.83 -2.91 -0.02 3.85 16
20 C -0.06 -3.40 5.49 84.86 0.47 -2.93 16
21 N -0.94 -57.47 10.31 21.65 0.22 -57.25 16
22 Si 0.97 48.20 29.55 68.60 2.03 50.22 16
23 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16
24 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16
25 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16
26 C 0.13 6.19 6.10 86.86 0.53 6.72 16
27 H 0.08 2.16 8.11 -2.39 -0.02 2.14 16
28 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16
29 H 0.05 1.87 6.53 -2.39 -0.02 1.85 16
30 H 0.40 12.22 7.41 -92.71 -0.69 11.53 16
31 H 0.23 4.61 7.46 -2.91 -0.02 4.59 16
32 H 0.22 0.86 8.06 -2.91 -0.02 0.84 16
33 H 0.23 -0.94 8.06 -2.91 -0.02 -0.97 16
34 H 0.22 1.40 8.06 -2.91 -0.02 1.38 16
35 H 0.10 2.85 8.05 -2.39 -0.02 2.83 16
36 H 0.09 2.93 8.01 -2.39 -0.02 2.91 16
37 H 0.01 0.49 7.52 -2.39 -0.02 0.47 16
38 H 0.02 1.02 7.37 -2.38 -0.02 1.01 16
39 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16
40 H 0.03 1.44 6.31 -2.39 -0.02 1.42 16
41 H 0.02 1.07 8.04 -2.39 -0.02 1.05 16
Total: -1.00 -91.60 341.03 2.41 -89.19
By element:
Atomic # 1 Polarization: 11.28 SS G_CDS: 0.39 Total: 11.67 kcal
Atomic # 6 Polarization: 23.94 SS G_CDS: 7.77 Total: 31.71 kcal
Atomic # 7 Polarization: -148.30 SS G_CDS: -7.72 Total: -156.02 kcal
Atomic # 8 Polarization: -26.72 SS G_CDS: -0.06 Total: -26.78 kcal
Atomic # 14 Polarization: 48.20 SS G_CDS: 2.03 Total: 50.22 kcal
Total: -91.60 2.41 -89.19 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001046533937.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 182.821 kcal
(2) G-P(sol) polarization free energy of solvation -91.603 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.218 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.408 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.195 kcal
(6) G-S(sol) free energy of system = (1) + (5) 93.626 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds