Wall clock time and date at job start Tue Mar 31 2020 10:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 110.88653 * 2 1 4 4 C 1.34775 * 120.00088 * 59.30047 * 3 2 1 5 5 O 1.21557 * 119.99982 * 0.02562 * 4 3 2 6 6 C 1.47803 * 120.00005 * 180.02562 * 4 3 2 7 7 N 1.32298 * 120.59149 * 359.97438 * 6 4 3 8 8 C 1.32687 * 121.18676 * 179.97438 * 7 6 4 9 9 C 1.35480 * 122.11731 * 0.02562 * 8 7 6 10 10 N 1.36219 * 120.52120 * 0.02562 * 9 8 7 11 11 C 1.36164 * 133.92846 * 179.97438 * 10 9 8 12 12 C 1.35342 * 107.14253 * 180.02562 * 11 10 9 13 13 N 1.33555 * 108.61525 * 359.97438 * 12 11 10 14 14 C 1.31853 * 109.14488 * 359.74204 * 13 12 11 15 15 C 1.55165 * 111.00426 * 236.07708 * 2 1 3 16 16 C 1.54320 * 102.94006 * 206.42285 * 15 2 1 17 17 N 1.47023 * 107.27576 * 22.19194 * 16 15 2 18 18 C 1.36933 * 125.64851 * 181.02277 * 17 16 15 19 19 H 1.08000 * 119.99877 * 180.02562 * 18 17 16 20 20 C 1.38811 * 120.00137 * 0.04163 * 18 17 16 21 21 N 1.31612 * 120.00209 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99839 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47183 * 60.00184 * 22 20 18 24 24 H 1.48505 * 109.47355 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47235 * 299.99860 * 22 20 18 26 26 C 1.47424 * 108.70235 * 1.05739 * 17 16 15 27 27 H 1.09002 * 109.47153 * 297.57234 * 1 2 3 28 28 H 1.09001 * 109.46832 * 177.57425 * 1 2 3 29 29 H 1.09004 * 109.47261 * 57.57406 * 1 2 3 30 30 H 0.97008 * 119.99808 * 239.30462 * 3 2 1 31 31 H 1.07998 * 118.94032 * 180.02562 * 8 7 6 32 32 H 1.07993 * 119.74015 * 180.02562 * 9 8 7 33 33 H 1.07997 * 126.42489 * 0.02562 * 11 10 9 34 34 H 1.07998 * 125.69102 * 179.97438 * 12 11 10 35 35 H 1.08990 * 110.71702 * 324.78417 * 15 2 1 36 36 H 1.09003 * 110.71788 * 88.06328 * 15 2 1 37 37 H 1.09006 * 109.88205 * 262.77151 * 16 15 2 38 38 H 1.09003 * 110.01235 * 141.68506 * 16 15 2 39 39 H 0.97000 * 120.00659 * 179.97438 * 21 20 18 40 40 H 1.08992 * 110.37079 * 217.03221 * 26 17 16 41 41 H 1.09005 * 110.45662 * 94.75392 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3688 0.0000 4 6 1.7358 2.2108 1.0036 5 8 1.0174 1.8344 1.9090 6 6 2.2623 3.5919 1.0033 7 7 3.0456 4.0136 0.0240 8 6 3.5243 5.2510 0.0116 9 6 3.2412 6.1428 0.9915 10 7 2.4432 5.7907 2.0378 11 6 1.9909 6.4451 3.1429 12 6 1.2206 5.5738 3.8352 13 7 1.1953 4.4116 3.1777 14 6 1.9227 4.5181 2.0831 15 6 2.0861 -0.8084 -1.2020 16 6 3.4674 -1.2744 -0.6956 17 7 3.4272 -1.2427 0.7738 18 6 4.4641 -1.5660 1.6076 19 1 4.3334 -1.5108 2.6783 20 6 5.6833 -1.9644 1.0769 21 7 5.8429 -2.0310 -0.2278 22 14 7.0979 -2.4048 2.2146 23 1 6.6981 -3.5390 3.0856 24 1 8.2809 -2.7943 1.4057 25 1 7.4399 -1.2304 3.0567 26 6 2.0853 -0.8061 1.2006 27 1 -0.3633 0.4757 0.9110 28 1 -0.3633 -1.0268 -0.0435 29 1 -0.3634 0.5511 -0.8675 30 1 2.6259 1.6690 -0.7224 31 1 4.1602 5.5572 -0.8058 32 1 3.6514 7.1406 0.9427 33 1 2.2064 7.4676 3.4157 34 1 0.7114 5.7834 4.7642 35 1 1.4468 -1.6637 -1.4203 36 1 2.1922 -0.1707 -2.0796 37 1 4.2426 -0.6001 -1.0598 38 1 3.6678 -2.2892 -1.0392 39 1 6.6949 -2.3090 -0.5987 40 1 2.1560 -0.1712 2.0837 41 1 1.4509 -1.6688 1.4043 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046632125.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:49 Heat of formation + Delta-G solvation = 113.144719 kcal Electronic energy + Delta-G solvation = -26526.432324 eV Core-core repulsion = 22830.482814 eV Total energy + Delta-G solvation = -3695.949511 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.15362 -39.83944 -38.52610 -37.16148 -34.43849 -33.86151 -31.87490 -30.75164 -29.97965 -29.48785 -28.59363 -25.76429 -25.51386 -23.60633 -23.43998 -22.37169 -21.15725 -20.13812 -19.09969 -18.66374 -18.12568 -16.82941 -16.38951 -16.16719 -15.75547 -15.45073 -14.83762 -14.59009 -14.53018 -14.24577 -13.94778 -13.69113 -13.40631 -13.14183 -12.92816 -12.69423 -12.02384 -11.82718 -11.78957 -11.59268 -11.54339 -10.84048 -10.81217 -10.48577 -10.38234 -10.28438 -10.21147 -10.05040 -9.92901 -9.58184 -9.34490 -9.17808 -8.59133 -8.48991 -8.36562 -6.72167 -5.63475 -2.94671 -0.08068 1.00493 2.09738 2.60057 2.83037 3.15299 3.46054 3.49572 3.51407 3.71456 3.79517 3.92305 4.09051 4.39645 4.57375 4.82721 4.95125 5.06783 5.12378 5.21290 5.44836 5.52188 5.57301 5.69070 5.80998 5.86057 6.09589 6.21221 6.24629 6.29325 6.43781 6.47517 6.49615 6.61644 6.75917 6.89366 7.16826 7.26971 7.62364 7.64636 7.65426 7.87804 7.96596 8.34018 8.55586 9.31204 9.91218 10.57471 11.48534 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013567 B = 0.004298 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.348736 B = 6513.188902 C = 7279.069748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.156 3.844 3 N -0.677 5.677 4 C 0.572 3.428 5 O -0.497 6.497 6 C 0.192 3.808 7 N -0.427 5.427 8 C 0.035 3.965 9 C 0.025 3.975 10 N -0.357 5.357 11 C -0.085 4.085 12 C 0.031 3.969 13 N -0.431 5.431 14 C 0.192 3.808 15 C -0.145 4.145 16 C 0.177 3.823 17 N -0.603 5.603 18 C -0.220 4.220 19 H 0.075 0.925 20 C -0.009 4.009 21 N -0.924 5.924 22 Si 0.909 3.091 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.287 1.287 26 C 0.131 3.869 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.050 0.950 30 H 0.408 0.592 31 H 0.185 0.815 32 H 0.174 0.826 33 H 0.189 0.811 34 H 0.188 0.812 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.046 0.954 38 H 0.044 0.956 39 H 0.251 0.749 40 H 0.053 0.947 41 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.927 18.983 -1.409 20.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.070 3.930 3 N -0.328 5.328 4 C 0.354 3.646 5 O -0.369 6.369 6 C 0.026 3.974 7 N -0.143 5.143 8 C -0.106 4.106 9 C -0.101 4.101 10 N -0.031 5.031 11 C -0.219 4.219 12 C -0.122 4.122 13 N -0.151 5.151 14 C -0.055 4.055 15 C -0.184 4.184 16 C 0.052 3.948 17 N -0.329 5.329 18 C -0.348 4.348 19 H 0.093 0.907 20 C -0.205 4.205 21 N -0.573 5.573 22 Si 0.740 3.260 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.214 1.214 26 C 0.005 3.995 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.244 0.756 31 H 0.202 0.798 32 H 0.192 0.808 33 H 0.206 0.794 34 H 0.205 0.795 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -8.300 17.529 -1.270 19.437 hybrid contribution 1.632 1.536 0.643 2.331 sum -6.669 19.065 -0.626 20.207 Atomic orbital electron populations 1.22018 0.94062 1.02160 1.02720 1.21576 0.92769 0.80190 0.98514 1.45621 1.50538 1.11767 1.24888 1.17118 0.81722 0.82536 0.83273 1.90844 1.35881 1.75355 1.34824 1.22466 0.93561 0.94288 0.87095 1.68145 1.07045 1.16128 1.22933 1.22131 1.01247 0.88256 0.98920 1.22718 0.96260 1.02838 0.88240 1.42900 1.31133 1.12716 1.16351 1.22763 1.07767 1.01319 0.90024 1.22910 0.99765 0.88643 1.00885 1.70692 1.18144 1.23334 1.02911 1.22565 1.00111 0.84698 0.98174 1.23228 1.00476 0.98836 0.95861 1.21165 0.90042 0.99945 0.83647 1.44434 1.07796 1.78819 1.01842 1.19022 0.89424 1.37411 0.88987 0.90668 1.24738 0.97663 1.02134 0.95971 1.69934 1.24113 1.54092 1.09119 0.86229 0.81969 0.78252 0.79521 1.21195 1.21655 1.21413 1.21891 0.87613 0.94963 0.95082 0.90621 0.91684 0.93067 0.75631 0.79847 0.80836 0.79380 0.79524 0.90704 0.91602 0.93583 0.93766 0.93888 0.92848 0.95411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 8.53 37.16 0.32 -2.09 16 2 C 0.16 2.88 0.82 -129.66 -0.11 2.78 16 3 N -0.68 -12.17 5.17 -46.56 -0.24 -12.41 16 4 C 0.57 10.80 7.19 -12.35 -0.09 10.71 16 5 O -0.50 -10.56 13.07 5.32 0.07 -10.49 16 6 C 0.19 3.20 6.97 -80.53 -0.56 2.64 16 7 N -0.43 -6.03 9.67 -8.68 -0.08 -6.11 16 8 C 0.03 0.35 11.01 -18.17 -0.20 0.15 16 9 C 0.02 0.22 11.00 -16.59 -0.18 0.03 16 10 N -0.36 -4.24 2.95 -61.13 -0.18 -4.42 16 11 C -0.09 -0.82 11.80 -16.66 -0.20 -1.01 16 12 C 0.03 0.36 11.83 -17.84 -0.21 0.15 16 13 N -0.43 -7.23 10.74 -11.28 -0.12 -7.35 16 14 C 0.19 3.09 7.67 -153.98 -1.18 1.91 16 15 C -0.15 -2.64 5.98 -24.89 -0.15 -2.79 16 16 C 0.18 4.26 5.37 -3.07 -0.02 4.24 16 17 N -0.60 -15.86 3.39 -170.07 -0.58 -16.44 16 18 C -0.22 -6.38 10.28 -15.06 -0.15 -6.54 16 19 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 20 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 21 N -0.92 -27.35 10.31 55.49 0.57 -26.78 16 22 Si 0.91 22.84 29.55 -169.99 -5.02 17.82 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 C 0.13 2.98 6.13 -2.53 -0.02 2.97 16 27 H 0.07 1.32 6.31 -51.93 -0.33 0.99 16 28 H 0.06 0.94 8.11 -51.93 -0.42 0.52 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.41 6.87 7.87 -40.82 -0.32 6.55 16 31 H 0.18 1.10 8.06 -52.49 -0.42 0.67 16 32 H 0.17 0.69 8.06 -52.49 -0.42 0.27 16 33 H 0.19 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.19 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.07 1.25 8.01 -51.93 -0.42 0.84 16 36 H 0.07 1.04 8.07 -51.93 -0.42 0.62 16 37 H 0.05 1.21 7.38 -51.93 -0.38 0.83 16 38 H 0.04 1.18 7.50 -51.93 -0.39 0.79 16 39 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.05 1.32 6.58 -51.93 -0.34 0.97 16 41 H 0.03 0.63 8.03 -51.93 -0.42 0.21 16 LS Contribution 340.62 15.07 5.13 5.13 Total: -1.00 -36.44 340.62 -8.39 -44.83 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -5.10 Total: 3.46 kcal Atomic # 6 Polarization: 15.61 SS G_CDS: -2.84 Total: 12.77 kcal Atomic # 7 Polarization: -72.89 SS G_CDS: -0.63 Total: -73.52 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.07 Total: -10.49 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -36.44 -8.39 -44.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046632125.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.976 kcal (2) G-P(sol) polarization free energy of solvation -36.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds