Wall clock time and date at job start Tue Mar 31 2020 10:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 110.88653 * 2 1 4 4 C 1.34775 * 120.00088 * 59.30047 * 3 2 1 5 5 O 1.21557 * 119.99982 * 0.02562 * 4 3 2 6 6 C 1.47803 * 120.00005 * 180.02562 * 4 3 2 7 7 N 1.32298 * 120.59149 * 359.97438 * 6 4 3 8 8 C 1.32687 * 121.18676 * 179.97438 * 7 6 4 9 9 C 1.35480 * 122.11731 * 0.02562 * 8 7 6 10 10 N 1.36219 * 120.52120 * 0.02562 * 9 8 7 11 11 C 1.36164 * 133.92846 * 179.97438 * 10 9 8 12 12 C 1.35342 * 107.14253 * 180.02562 * 11 10 9 13 13 N 1.33555 * 108.61525 * 359.97438 * 12 11 10 14 14 C 1.31853 * 109.14488 * 359.74204 * 13 12 11 15 15 C 1.55165 * 111.00426 * 236.07708 * 2 1 3 16 16 C 1.54320 * 102.94006 * 206.42285 * 15 2 1 17 17 N 1.47023 * 107.27576 * 22.19194 * 16 15 2 18 18 C 1.36933 * 125.64851 * 181.02277 * 17 16 15 19 19 H 1.08000 * 119.99877 * 180.02562 * 18 17 16 20 20 C 1.38811 * 120.00137 * 0.04163 * 18 17 16 21 21 N 1.31612 * 120.00209 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99839 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47183 * 60.00184 * 22 20 18 24 24 H 1.48505 * 109.47355 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47235 * 299.99860 * 22 20 18 26 26 C 1.47424 * 108.70235 * 1.05739 * 17 16 15 27 27 H 1.09002 * 109.47153 * 297.57234 * 1 2 3 28 28 H 1.09001 * 109.46832 * 177.57425 * 1 2 3 29 29 H 1.09004 * 109.47261 * 57.57406 * 1 2 3 30 30 H 0.97008 * 119.99808 * 239.30462 * 3 2 1 31 31 H 1.07998 * 118.94032 * 180.02562 * 8 7 6 32 32 H 1.07993 * 119.74015 * 180.02562 * 9 8 7 33 33 H 1.07997 * 126.42489 * 0.02562 * 11 10 9 34 34 H 1.07998 * 125.69102 * 179.97438 * 12 11 10 35 35 H 1.08990 * 110.71702 * 324.78417 * 15 2 1 36 36 H 1.09003 * 110.71788 * 88.06328 * 15 2 1 37 37 H 1.09006 * 109.88205 * 262.77151 * 16 15 2 38 38 H 1.09003 * 110.01235 * 141.68506 * 16 15 2 39 39 H 0.97000 * 120.00659 * 179.97438 * 21 20 18 40 40 H 1.08992 * 110.37079 * 217.03221 * 26 17 16 41 41 H 1.09005 * 110.45662 * 94.75392 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3688 0.0000 4 6 1.7358 2.2108 1.0036 5 8 1.0174 1.8344 1.9090 6 6 2.2623 3.5919 1.0033 7 7 3.0456 4.0136 0.0240 8 6 3.5243 5.2510 0.0116 9 6 3.2412 6.1428 0.9915 10 7 2.4432 5.7907 2.0378 11 6 1.9909 6.4451 3.1429 12 6 1.2206 5.5738 3.8352 13 7 1.1953 4.4116 3.1777 14 6 1.9227 4.5181 2.0831 15 6 2.0861 -0.8084 -1.2020 16 6 3.4674 -1.2744 -0.6956 17 7 3.4272 -1.2427 0.7738 18 6 4.4641 -1.5660 1.6076 19 1 4.3334 -1.5108 2.6783 20 6 5.6833 -1.9644 1.0769 21 7 5.8429 -2.0310 -0.2278 22 14 7.0979 -2.4048 2.2146 23 1 6.6981 -3.5390 3.0856 24 1 8.2809 -2.7943 1.4057 25 1 7.4399 -1.2304 3.0567 26 6 2.0853 -0.8061 1.2006 27 1 -0.3633 0.4757 0.9110 28 1 -0.3633 -1.0268 -0.0435 29 1 -0.3634 0.5511 -0.8675 30 1 2.6259 1.6690 -0.7224 31 1 4.1602 5.5572 -0.8058 32 1 3.6514 7.1406 0.9427 33 1 2.2064 7.4676 3.4157 34 1 0.7114 5.7834 4.7642 35 1 1.4468 -1.6637 -1.4203 36 1 2.1922 -0.1707 -2.0796 37 1 4.2426 -0.6001 -1.0598 38 1 3.6678 -2.2892 -1.0392 39 1 6.6949 -2.3090 -0.5987 40 1 2.1560 -0.1712 2.0837 41 1 1.4509 -1.6688 1.4043 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046632125.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:48 Heat of formation + Delta-G solvation = 86.383238 kcal Electronic energy + Delta-G solvation = -26527.592789 eV Core-core repulsion = 22830.482814 eV Total energy + Delta-G solvation = -3697.109976 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.04609 -41.26292 -39.54263 -38.74431 -35.68042 -35.41113 -33.63203 -32.00895 -31.33735 -30.51740 -30.26503 -27.51996 -26.71422 -25.37866 -24.34619 -23.44794 -22.41924 -21.90151 -20.54125 -19.63466 -19.38511 -18.73316 -17.36940 -17.33001 -17.01619 -16.64975 -16.45114 -16.03896 -15.87800 -15.57166 -15.26467 -14.97962 -14.77639 -14.26755 -14.12345 -13.92522 -13.84814 -13.52535 -13.39981 -13.08713 -12.84225 -12.75146 -12.60897 -12.14208 -12.05144 -11.99750 -11.69711 -11.60031 -11.42393 -11.20776 -10.74086 -10.69548 -10.11199 -9.98478 -9.23853 -8.85676 -7.85148 -5.18850 -1.03475 0.12924 1.25067 1.41571 1.44764 1.51320 1.59018 1.84943 2.00520 2.47887 2.58200 2.85193 2.96375 3.24931 3.32401 3.58260 3.70223 3.75669 4.02162 4.04909 4.18505 4.20096 4.33882 4.36947 4.66142 4.69126 4.73001 4.80609 4.87822 4.94044 5.03666 5.07363 5.09422 5.37413 5.42030 5.44952 5.63110 5.69229 5.71999 5.78217 6.20718 6.31586 6.60597 6.77419 7.12128 7.19048 7.77599 8.42387 9.24471 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013567 B = 0.004298 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.348736 B = 6513.188902 C = 7279.069748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.165 3.835 3 N -0.677 5.677 4 C 0.569 3.431 5 O -0.535 6.535 6 C 0.136 3.864 7 N -0.428 5.428 8 C 0.009 3.991 9 C 0.061 3.939 10 N -0.360 5.360 11 C -0.059 4.059 12 C 0.009 3.991 13 N -0.493 5.493 14 C 0.161 3.839 15 C -0.126 4.126 16 C 0.186 3.814 17 N -0.621 5.621 18 C -0.245 4.245 19 H 0.065 0.935 20 C -0.057 4.057 21 N -0.943 5.943 22 Si 0.973 3.027 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.285 1.285 26 C 0.129 3.871 27 H 0.056 0.944 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.412 0.588 31 H 0.226 0.774 32 H 0.236 0.764 33 H 0.245 0.755 34 H 0.214 0.786 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.016 0.984 38 H 0.012 0.988 39 H 0.248 0.752 40 H 0.024 0.976 41 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.439 22.342 -2.093 23.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.078 3.922 3 N -0.328 5.328 4 C 0.352 3.648 5 O -0.410 6.410 6 C -0.028 4.028 7 N -0.143 5.143 8 C -0.132 4.132 9 C -0.064 4.064 10 N -0.035 5.035 11 C -0.191 4.191 12 C -0.142 4.142 13 N -0.213 5.213 14 C -0.086 4.086 15 C -0.165 4.165 16 C 0.061 3.939 17 N -0.347 5.347 18 C -0.374 4.374 19 H 0.083 0.917 20 C -0.250 4.250 21 N -0.592 5.592 22 Si 0.801 3.199 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.211 1.211 26 C 0.003 3.997 27 H 0.075 0.925 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.249 0.751 31 H 0.242 0.758 32 H 0.253 0.747 33 H 0.261 0.739 34 H 0.231 0.769 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.035 0.965 38 H 0.031 0.969 39 H 0.058 0.942 40 H 0.042 0.958 41 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -7.845 20.888 -1.951 22.398 hybrid contribution 1.544 0.711 0.920 1.932 sum -6.301 21.599 -1.031 22.523 Atomic orbital electron populations 1.21935 0.91606 1.03444 1.02889 1.21480 0.94383 0.80162 0.96161 1.45595 1.50731 1.11412 1.25112 1.17544 0.80967 0.83750 0.82504 1.90796 1.37633 1.76571 1.36027 1.21859 0.97475 0.93739 0.89684 1.68028 1.05728 1.18448 1.22127 1.22935 1.02180 0.87110 1.00990 1.23736 0.92488 1.04658 0.85524 1.43265 1.31126 1.11557 1.17544 1.23621 1.05011 1.02553 0.87918 1.23576 1.00723 0.87901 1.02031 1.70588 1.20046 1.26285 1.04418 1.22426 1.01466 0.86486 0.98262 1.23111 0.96919 0.99995 0.96429 1.20953 0.92892 0.97539 0.82530 1.44678 1.08478 1.78834 1.02740 1.19270 0.90891 1.38039 0.89210 0.91682 1.25503 0.99795 1.02192 0.97544 1.70133 1.24324 1.54372 1.10377 0.85244 0.78860 0.77981 0.77776 1.20470 1.21107 1.21129 1.21974 0.86499 0.95107 0.96101 0.92541 0.89988 0.90575 0.75146 0.75763 0.74733 0.73898 0.76949 0.88406 0.88447 0.96550 0.96937 0.94238 0.95782 0.95160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.40 8.53 71.98 0.61 -3.79 16 2 C 0.16 6.19 0.82 5.00 0.00 6.20 16 3 N -0.68 -25.23 5.17 -419.50 -2.17 -27.40 16 4 C 0.57 22.80 7.19 86.77 0.62 23.42 16 5 O -0.53 -24.55 13.07 -3.89 -0.05 -24.60 16 6 C 0.14 4.71 6.97 43.69 0.30 5.01 16 7 N -0.43 -11.90 9.67 -181.37 -1.75 -13.65 16 8 C 0.01 0.15 11.01 83.93 0.92 1.08 16 9 C 0.06 0.78 11.00 83.37 0.92 1.70 16 10 N -0.36 -7.56 2.95 -347.30 -1.02 -8.58 16 11 C -0.06 -0.90 11.80 83.35 0.98 0.08 16 12 C 0.01 0.19 11.83 83.76 0.99 1.18 16 13 N -0.49 -17.10 10.74 -189.61 -2.04 -19.13 16 14 C 0.16 5.23 7.67 135.58 1.04 6.27 16 15 C -0.13 -4.51 5.98 31.78 0.19 -4.32 16 16 C 0.19 9.23 5.37 86.73 0.47 9.70 16 17 N -0.62 -34.18 3.39 -691.99 -2.35 -36.53 16 18 C -0.24 -14.84 10.28 84.03 0.86 -13.98 16 19 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 20 C -0.06 -3.37 5.49 84.86 0.47 -2.91 16 21 N -0.94 -57.42 10.31 21.65 0.22 -57.20 16 22 Si 0.97 47.97 29.55 68.60 2.03 50.00 16 23 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 24 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 25 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 26 C 0.13 6.16 6.13 86.86 0.53 6.70 16 27 H 0.06 2.02 6.31 -2.39 -0.02 2.01 16 28 H 0.08 2.27 8.11 -2.39 -0.02 2.25 16 29 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 30 H 0.41 14.25 7.87 -92.70 -0.73 13.52 16 31 H 0.23 1.68 8.06 -2.91 -0.02 1.66 16 32 H 0.24 0.05 8.06 -2.91 -0.02 0.02 16 33 H 0.24 0.81 8.06 -2.91 -0.02 0.79 16 34 H 0.21 3.11 8.06 -2.91 -0.02 3.08 16 35 H 0.10 3.09 8.01 -2.39 -0.02 3.07 16 36 H 0.10 2.90 8.07 -2.39 -0.02 2.88 16 37 H 0.02 0.89 7.38 -2.38 -0.02 0.88 16 38 H 0.01 0.69 7.50 -2.39 -0.02 0.67 16 39 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 40 H 0.02 1.27 6.58 -2.39 -0.02 1.26 16 41 H 0.03 1.42 8.03 -2.38 -0.02 1.40 16 Total: -1.00 -88.42 340.62 2.13 -86.29 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 0.34 Total: 14.47 kcal Atomic # 6 Polarization: 27.42 SS G_CDS: 8.92 Total: 36.34 kcal Atomic # 7 Polarization: -153.39 SS G_CDS: -9.11 Total: -162.50 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -0.05 Total: -24.60 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 2.03 Total: 50.00 kcal Total: -88.42 2.13 -86.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046632125.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.675 kcal (2) G-P(sol) polarization free energy of solvation -88.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds