Wall clock time and date at job start Tue Mar 31 2020 10:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 110.64009 * 2 1 4 4 C 1.34777 * 119.99828 * 298.03298 * 3 2 1 5 5 O 1.21763 * 120.00058 * 0.28022 * 4 3 2 6 6 C 1.46190 * 120.00164 * 180.27701 * 4 3 2 7 7 C 1.38719 * 126.76493 * 179.68600 * 6 4 3 8 8 N 1.32284 * 108.18068 * 179.88583 * 7 6 4 9 9 C 1.33133 * 109.71155 * 0.39154 * 8 7 6 10 10 C 1.40626 * 132.29031 * 179.79573 * 9 8 7 11 11 C 1.36305 * 119.22672 * 179.97438 * 10 9 8 12 12 C 1.39874 * 120.11970 * 0.02562 * 11 10 9 13 13 N 1.30801 * 120.77839 * 359.97438 * 12 11 10 14 14 N 1.36657 * 108.63012 * 359.75320 * 9 8 7 15 15 C 1.55163 * 110.87343 * 123.24719 * 2 1 3 16 16 C 1.54902 * 101.58084 * 153.93840 * 15 2 1 17 17 N 1.47431 * 104.83256 * 322.98525 * 16 15 2 18 18 C 1.36938 * 125.64690 * 204.09499 * 17 16 15 19 19 H 1.08003 * 119.99327 * 180.02562 * 18 17 16 20 20 C 1.38801 * 120.00396 * 0.04469 * 18 17 16 21 21 N 1.31621 * 120.00080 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00259 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46938 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47126 * 119.99885 * 22 20 18 25 25 H 1.48501 * 109.47349 * 240.00256 * 22 20 18 26 26 C 1.47022 * 108.69949 * 24.13420 * 17 16 15 27 27 H 1.09002 * 109.47025 * 59.30017 * 1 2 3 28 28 H 1.09000 * 109.47080 * 179.30561 * 1 2 3 29 29 H 1.09003 * 109.47001 * 299.30069 * 1 2 3 30 30 H 0.97001 * 120.00384 * 118.31745 * 3 2 1 31 31 H 1.07999 * 125.91190 * 0.04269 * 7 6 4 32 32 H 1.07999 * 120.38918 * 359.93209 * 10 9 8 33 33 H 1.07996 * 119.94340 * 179.97438 * 11 10 9 34 34 H 1.07997 * 119.61370 * 180.02562 * 12 11 10 35 35 H 1.08999 * 110.99880 * 272.01138 * 15 2 1 36 36 H 1.09000 * 110.99961 * 35.85987 * 15 2 1 37 37 H 1.09003 * 110.36598 * 204.15399 * 16 15 2 38 38 H 1.08991 * 110.37105 * 81.82648 * 16 15 2 39 39 H 0.97001 * 119.99944 * 179.97438 * 21 20 18 40 40 H 1.09000 * 109.88158 * 239.51445 * 26 17 16 41 41 H 1.08997 * 110.01069 * 118.42874 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3709 0.0000 4 6 1.7706 2.1949 -1.0303 5 8 1.0879 1.8015 -1.9586 6 6 2.2909 3.5611 -1.0332 7 6 2.1005 4.5199 -2.0174 8 7 2.7290 5.6231 -1.6460 9 6 3.3262 5.4262 -0.4725 10 6 4.1116 6.2618 0.3415 11 6 4.5998 5.7767 1.5181 12 6 4.3198 4.4622 1.9055 13 7 3.5896 3.6829 1.1502 14 7 3.0719 4.1477 -0.0623 15 6 2.0829 -0.7949 1.2125 16 6 3.4674 -1.2454 0.6838 17 7 3.2471 -1.5462 -0.7426 18 6 4.0077 -2.3901 -1.5070 19 1 3.7632 -2.5440 -2.5477 20 6 5.0926 -3.0482 -0.9444 21 7 5.3900 -2.8614 0.3241 22 14 6.1298 -4.2000 -1.9870 23 1 5.5902 -4.2367 -3.3700 24 1 7.5324 -3.7132 -2.0162 25 1 6.0916 -5.5652 -1.4038 26 6 2.0760 -0.7892 -1.2085 27 1 -0.3633 0.5247 -0.8837 28 1 -0.3633 -1.0276 -0.0125 29 1 -0.3633 0.5029 0.8962 30 1 2.5903 1.6844 0.7395 31 1 1.5346 4.3894 -2.9280 32 1 4.3260 7.2757 0.0377 33 1 5.2045 6.4082 2.1519 34 1 4.7104 4.0864 2.8396 35 1 2.1887 -0.1514 2.0859 36 1 1.4515 -1.6546 1.4367 37 1 3.8032 -2.1378 1.2121 38 1 4.1954 -0.4419 0.7939 39 1 6.1480 -3.3215 0.7174 40 1 1.3140 -1.4754 -1.5781 41 1 2.3686 -0.0994 -2.0001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046682720.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:00 Heat of formation + Delta-G solvation = 97.624407 kcal Electronic energy + Delta-G solvation = -26563.773726 eV Core-core repulsion = 22867.151204 eV Total energy + Delta-G solvation = -3696.622522 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.68521 -41.20575 -39.24991 -38.65574 -35.82117 -34.89290 -33.59576 -32.35194 -31.85396 -30.63712 -30.21952 -27.59176 -26.06450 -25.52849 -24.90057 -23.56942 -22.35855 -21.81320 -20.61709 -19.80029 -18.92885 -18.52306 -17.52278 -17.40217 -17.20611 -16.85924 -16.69975 -15.92237 -15.61495 -15.54164 -15.00537 -14.89692 -14.66084 -14.31620 -14.09769 -13.83300 -13.79927 -13.62115 -13.35286 -13.18933 -12.87131 -12.82008 -12.38559 -12.19419 -12.13158 -12.06412 -11.99043 -11.73416 -11.64243 -11.22845 -10.93057 -10.78978 -10.64580 -10.15520 -9.40023 -8.92335 -7.81859 -5.25766 -0.62997 -0.27965 0.61132 1.16285 1.43008 1.43778 1.54745 2.01443 2.17021 2.23231 2.45792 2.87013 3.00101 3.27652 3.54135 3.62119 3.65849 3.85542 3.89344 3.96391 4.12012 4.16136 4.24101 4.43655 4.58705 4.61539 4.73649 4.79175 4.82345 4.85230 4.86382 4.97807 5.03213 5.14890 5.28589 5.33459 5.39675 5.54507 5.59770 5.75051 6.26607 6.31411 6.34801 6.54782 7.06054 7.10335 7.72897 8.37368 9.20189 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.014590 B = 0.004071 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.647013 B = 6876.301159 C = 7442.059819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.165 3.835 3 N -0.696 5.696 4 C 0.593 3.407 5 O -0.557 6.557 6 C -0.098 4.098 7 C 0.104 3.896 8 N -0.491 5.491 9 C 0.179 3.821 10 C -0.027 4.027 11 C -0.136 4.136 12 C 0.147 3.853 13 N -0.310 5.310 14 N -0.263 5.263 15 C -0.127 4.127 16 C 0.160 3.840 17 N -0.623 5.623 18 C -0.244 4.244 19 H 0.070 0.930 20 C -0.060 4.060 21 N -0.944 5.944 22 Si 0.980 3.020 23 H -0.273 1.273 24 H -0.290 1.290 25 H -0.283 1.283 26 C 0.135 3.865 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.409 0.591 31 H 0.212 0.788 32 H 0.196 0.804 33 H 0.216 0.784 34 H 0.250 0.750 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.081 0.919 38 H -0.016 1.016 39 H 0.249 0.751 40 H 0.029 0.971 41 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.029 20.262 9.383 22.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.079 3.921 3 N -0.348 5.348 4 C 0.381 3.619 5 O -0.436 6.436 6 C -0.217 4.217 7 C -0.058 4.058 8 N -0.211 5.211 9 C -0.067 4.067 10 C -0.054 4.054 11 C -0.161 4.161 12 C -0.043 4.043 13 N -0.123 5.123 14 N -0.033 5.033 15 C -0.165 4.165 16 C 0.035 3.965 17 N -0.349 5.349 18 C -0.373 4.373 19 H 0.088 0.912 20 C -0.253 4.253 21 N -0.594 5.594 22 Si 0.808 3.192 23 H -0.198 1.198 24 H -0.217 1.217 25 H -0.210 1.210 26 C 0.009 3.991 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.247 0.753 31 H 0.228 0.772 32 H 0.213 0.787 33 H 0.233 0.767 34 H 0.265 0.735 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.099 0.901 38 H 0.002 0.998 39 H 0.059 0.941 40 H 0.047 0.953 41 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -3.687 19.510 8.378 21.551 hybrid contribution 1.205 -0.620 -0.286 1.385 sum -2.482 18.890 8.093 20.699 Atomic orbital electron populations 1.21964 0.91686 1.03249 1.02912 1.21309 0.94696 0.80134 0.95938 1.45961 1.53498 1.12182 1.23160 1.16775 0.79791 0.82958 0.82413 1.90799 1.40636 1.76074 1.36122 1.21309 1.09201 0.97272 0.93927 1.23405 0.97761 0.86328 0.98305 1.70480 1.14086 1.26450 1.10121 1.22143 1.03599 0.85698 0.95302 1.21220 0.91479 1.00988 0.91702 1.22231 1.00959 0.95984 0.96927 1.25261 0.88267 0.92305 0.98455 1.75666 1.16265 1.27749 0.92578 1.46951 1.31816 1.11113 1.13396 1.23209 0.97775 0.99704 0.95851 1.21712 0.92022 0.98454 0.84331 1.44797 1.31168 1.50494 1.08440 1.19437 1.07045 1.17499 0.93300 0.91174 1.25557 0.99719 1.02202 0.97783 1.70014 1.30145 1.47115 1.12125 0.84996 0.77969 0.78299 0.77970 1.19818 1.21734 1.20996 1.21681 0.89320 0.92770 0.95304 0.92217 0.90473 0.90589 0.75295 0.77150 0.78687 0.76707 0.73474 0.88687 0.89036 0.90149 0.99794 0.94090 0.95261 0.97504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.49 8.46 71.98 0.61 -3.88 16 2 C 0.17 6.35 0.81 4.79 0.00 6.36 16 3 N -0.70 -25.84 5.14 -421.88 -2.17 -28.00 16 4 C 0.59 22.99 6.99 86.31 0.60 23.59 16 5 O -0.56 -23.95 13.82 -4.55 -0.06 -24.01 16 6 C -0.10 -3.35 7.10 40.40 0.29 -3.06 16 7 C 0.10 3.18 11.69 84.74 0.99 4.17 16 8 N -0.49 -14.14 11.25 -192.62 -2.17 -16.31 16 9 C 0.18 4.45 7.85 133.99 1.05 5.50 16 10 C -0.03 -0.34 10.11 22.40 0.23 -0.12 16 11 C -0.14 -0.85 10.03 22.22 0.22 -0.63 16 12 C 0.15 1.64 11.30 85.24 0.96 2.60 16 13 N -0.31 -7.31 10.04 -57.04 -0.57 -7.88 16 14 N -0.26 -7.59 4.05 -181.38 -0.74 -8.32 16 15 C -0.13 -4.72 6.09 31.99 0.19 -4.52 16 16 C 0.16 8.00 5.87 86.85 0.51 8.51 16 17 N -0.62 -34.49 3.39 -692.01 -2.35 -36.84 16 18 C -0.24 -14.62 10.27 84.03 0.86 -13.76 16 19 H 0.07 4.17 7.83 -2.91 -0.02 4.14 16 20 C -0.06 -3.50 5.49 84.86 0.47 -3.03 16 21 N -0.94 -56.52 10.09 21.65 0.22 -56.31 16 22 Si 0.98 47.14 29.55 68.60 2.03 49.17 16 23 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 24 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 25 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 26 C 0.14 6.56 6.13 86.73 0.53 7.10 16 27 H 0.06 2.10 6.38 -2.39 -0.02 2.08 16 28 H 0.08 2.30 8.12 -2.39 -0.02 2.28 16 29 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.41 14.18 6.46 -92.71 -0.60 13.58 16 31 H 0.21 5.60 8.06 -2.91 -0.02 5.57 16 32 H 0.20 1.18 8.06 -2.91 -0.02 1.16 16 33 H 0.22 -0.96 8.06 -2.91 -0.02 -0.98 16 34 H 0.25 0.30 8.06 -2.91 -0.02 0.28 16 35 H 0.09 2.91 8.04 -2.39 -0.02 2.89 16 36 H 0.09 3.20 8.05 -2.39 -0.02 3.18 16 37 H 0.08 4.50 5.87 -2.39 -0.01 4.48 16 38 H -0.02 -0.86 8.14 -2.39 -0.02 -0.88 16 39 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 40 H 0.03 1.42 7.80 -2.39 -0.02 1.40 16 41 H 0.01 0.37 6.45 -2.39 -0.02 0.36 16 Total: -1.00 -84.52 338.68 2.19 -82.33 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 0.47 Total: 17.36 kcal Atomic # 6 Polarization: 21.30 SS G_CDS: 7.52 Total: 28.82 kcal Atomic # 7 Polarization: -145.89 SS G_CDS: -7.77 Total: -153.67 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.06 Total: -24.01 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -84.52 2.19 -82.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046682720.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.956 kcal (2) G-P(sol) polarization free energy of solvation -84.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds