Wall clock time and date at job start Tue Mar 31 2020 10:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 N 1.46504 * 110.88987 * 2 1 4 4 C 1.34773 * 119.99861 * 62.42607 * 3 2 1 5 5 O 1.21546 * 120.00023 * 0.02562 * 4 3 2 6 6 C 1.47886 * 119.99925 * 180.02562 * 4 3 2 7 7 C 1.39898 * 125.69443 * 180.02562 * 6 4 3 8 8 C 1.38581 * 107.58980 * 180.28533 * 7 6 4 9 9 N 1.34119 * 132.33432 * 180.48349 * 8 7 6 10 10 C 1.31128 * 120.83924 * 179.64187 * 9 8 7 11 11 C 1.40349 * 120.29797 * 359.64384 * 10 9 8 12 12 C 1.35451 * 119.46490 * 0.03204 * 11 10 9 13 13 N 1.36675 * 119.14042 * 359.97438 * 12 11 10 14 14 N 1.32377 * 125.69134 * 0.02562 * 6 4 3 15 15 C 1.55157 * 111.03729 * 236.09538 * 2 1 3 16 16 C 1.54328 * 102.94319 * 206.41019 * 15 2 1 17 17 N 1.47020 * 107.27050 * 22.19505 * 16 15 2 18 18 C 1.36936 * 125.64897 * 181.02703 * 17 16 15 19 19 H 1.07996 * 120.00244 * 180.02562 * 18 17 16 20 20 C 1.38814 * 119.99619 * 0.03558 * 18 17 16 21 21 N 1.31618 * 120.00586 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99753 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47083 * 59.99797 * 22 20 18 24 24 H 1.48502 * 109.47294 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47143 * 299.99776 * 22 20 18 26 26 C 1.47419 * 108.70402 * 1.05626 * 17 16 15 27 27 H 1.09001 * 109.47280 * 60.69824 * 1 2 3 28 28 H 1.08993 * 109.47712 * 180.70487 * 1 2 3 29 29 H 1.09004 * 109.46965 * 300.70251 * 1 2 3 30 30 H 0.97006 * 119.99795 * 242.42519 * 3 2 1 31 31 H 1.08002 * 126.20106 * 0.02562 * 7 6 4 32 32 H 1.07998 * 119.85018 * 179.67833 * 10 9 8 33 33 H 1.07997 * 120.26369 * 180.02562 * 11 10 9 34 34 H 1.08001 * 120.42894 * 179.97438 * 12 11 10 35 35 H 1.09007 * 110.71806 * 324.77013 * 15 2 1 36 36 H 1.08993 * 110.72425 * 88.04631 * 15 2 1 37 37 H 1.08999 * 109.88196 * 262.77353 * 16 15 2 38 38 H 1.09000 * 109.88045 * 141.60854 * 16 15 2 39 39 H 0.96995 * 120.00020 * 180.02562 * 21 20 18 40 40 H 1.09004 * 110.36847 * 217.04069 * 26 17 16 41 41 H 1.08993 * 110.46230 * 94.76253 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.7878 2.1909 1.0346 5 8 1.1163 1.7967 1.9679 6 6 2.3146 3.5728 1.0344 7 6 2.1147 4.5227 2.0417 8 6 2.7645 5.6846 1.6566 9 7 2.8989 6.8820 2.2456 10 6 3.5835 7.8411 1.6703 11 6 4.1956 7.6257 0.4258 12 6 4.0731 6.4190 -0.1770 13 7 3.3544 5.4354 0.4426 14 7 3.0541 4.1172 0.0809 15 6 2.0869 -0.8078 -1.2019 16 6 3.4683 -1.2733 -0.6952 17 7 3.4274 -1.2421 0.7741 18 6 4.4641 -1.5650 1.6084 19 1 4.3330 -1.5102 2.6790 20 6 5.6837 -1.9627 1.0780 21 7 5.8435 -2.0299 -0.2268 22 14 7.0979 -2.4040 2.2160 23 1 6.6976 -3.5391 3.0858 24 1 8.2813 -2.7925 1.4074 25 1 7.4391 -1.2304 3.0595 26 6 2.0852 -0.8062 1.2006 27 1 -0.3634 0.5029 -0.8962 28 1 -0.3634 -1.0275 0.0126 29 1 -0.3633 0.5247 0.8837 30 1 2.5886 1.6832 -0.7447 31 1 1.5521 4.3782 2.9522 32 1 3.6772 8.8008 2.1566 33 1 4.7596 8.4159 -0.0473 34 1 4.5373 6.2364 -1.1349 35 1 1.4480 -1.6635 -1.4207 36 1 2.1929 -0.1700 -2.0794 37 1 4.2432 -0.5986 -1.0589 38 1 3.6664 -2.2885 -1.0390 39 1 6.6957 -2.3081 -0.5973 40 1 2.1553 -0.1713 2.0839 41 1 1.4511 -1.6691 1.4039 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046721932.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:06 Heat of formation + Delta-G solvation = 121.873613 kcal Electronic energy + Delta-G solvation = -26107.425544 eV Core-core repulsion = 22411.854547 eV Total energy + Delta-G solvation = -3695.570997 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.47656 -39.87995 -38.19374 -37.07373 -34.26224 -33.96167 -32.15306 -31.15581 -29.89182 -29.30004 -28.65119 -25.72673 -25.44345 -24.19477 -23.58123 -22.60535 -20.58133 -20.02153 -19.10166 -18.48824 -17.84480 -17.03194 -16.60851 -16.29182 -15.62642 -15.50166 -14.73284 -14.63511 -14.57567 -14.10109 -13.73042 -13.63912 -13.33493 -13.16340 -12.80822 -12.72318 -12.05316 -11.91528 -11.80288 -11.64284 -11.45800 -11.44541 -10.87431 -10.83777 -10.46940 -10.34345 -10.17374 -10.08489 -9.99508 -9.72560 -9.61246 -9.51545 -8.64923 -8.51904 -8.15624 -6.75564 -5.66206 -2.97859 0.23384 0.52859 1.74452 1.82256 3.12453 3.20323 3.44488 3.48010 3.49771 3.54621 3.66000 3.91683 4.09131 4.54882 4.56115 4.70644 5.00433 5.06630 5.18598 5.26007 5.39609 5.50348 5.56787 5.64539 5.73991 5.75820 6.02039 6.08598 6.14651 6.16991 6.23265 6.36123 6.42082 6.55086 6.69157 6.83729 7.03469 7.12939 7.33227 7.58893 7.61106 7.83209 7.87497 8.30828 8.44219 9.28231 9.88318 10.54245 11.45849 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.012856 B = 0.003997 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.507170 B = 7004.277238 C = 8187.342154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.154 3.846 3 N -0.681 5.681 4 C 0.600 3.400 5 O -0.518 6.518 6 C 0.083 3.917 7 C -0.199 4.199 8 C 0.245 3.755 9 N -0.456 5.456 10 C 0.176 3.824 11 C -0.226 4.226 12 C 0.165 3.835 13 N -0.308 5.308 14 N -0.273 5.273 15 C -0.146 4.146 16 C 0.177 3.823 17 N -0.603 5.603 18 C -0.222 4.222 19 H 0.076 0.924 20 C -0.009 4.009 21 N -0.925 5.925 22 Si 0.910 3.090 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.287 1.287 26 C 0.130 3.870 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.405 0.595 31 H 0.173 0.827 32 H 0.180 0.820 33 H 0.168 0.832 34 H 0.181 0.819 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.045 0.955 38 H 0.044 0.956 39 H 0.251 0.749 40 H 0.056 0.944 41 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.347 19.631 -3.668 20.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.067 3.933 3 N -0.331 5.331 4 C 0.382 3.618 5 O -0.392 6.392 6 C -0.077 4.077 7 C -0.230 4.230 8 C 0.019 3.981 9 N -0.167 5.167 10 C -0.010 4.010 11 C -0.250 4.250 12 C 0.031 3.969 13 N -0.081 5.081 14 N -0.103 5.103 15 C -0.184 4.184 16 C 0.052 3.948 17 N -0.329 5.329 18 C -0.350 4.350 19 H 0.094 0.906 20 C -0.205 4.205 21 N -0.573 5.573 22 Si 0.741 3.259 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.213 1.213 26 C 0.004 3.996 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.240 0.760 31 H 0.190 0.810 32 H 0.197 0.803 33 H 0.186 0.814 34 H 0.198 0.802 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -6.596 18.776 -3.321 20.176 hybrid contribution 1.389 0.111 0.061 1.395 sum -5.207 18.887 -3.260 19.861 Atomic orbital electron populations 1.21998 0.94073 1.02398 1.02380 1.21602 0.92728 0.80185 0.98743 1.45696 1.52990 1.12548 1.21847 1.16739 0.80278 0.81759 0.82997 1.90771 1.38954 1.74634 1.34802 1.22323 0.96331 0.96045 0.92986 1.20993 1.09722 0.88841 1.03411 1.20535 0.98155 0.94183 0.85233 1.68243 1.17936 0.98245 1.32254 1.23420 0.88703 0.97634 0.91263 1.21838 1.06855 0.97492 0.98851 1.22110 0.90898 0.85356 0.98564 1.47187 1.34291 1.10450 1.16172 1.78181 1.22318 0.87174 1.22613 1.23235 1.00546 0.98865 0.95794 1.21160 0.89970 0.99920 0.83702 1.44428 1.07767 1.78896 1.01804 1.19027 0.89403 1.37575 0.88996 0.90604 1.24750 0.97690 1.02057 0.95988 1.69936 1.24132 1.54050 1.09173 0.86221 0.81910 0.78280 0.79518 1.21147 1.21650 1.21348 1.21905 0.87637 0.94963 0.95135 0.92996 0.91535 0.90951 0.75983 0.80965 0.80263 0.81445 0.80190 0.90641 0.91685 0.93643 0.93751 0.93875 0.92556 0.95410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 8.62 37.15 0.32 -2.00 16 2 C 0.15 2.81 0.82 -129.67 -0.11 2.71 16 3 N -0.68 -12.19 5.17 -46.54 -0.24 -12.43 16 4 C 0.60 11.16 7.22 -12.31 -0.09 11.07 16 5 O -0.52 -10.56 13.65 5.33 0.07 -10.49 16 6 C 0.08 1.42 7.05 -83.06 -0.59 0.83 16 7 C -0.20 -3.15 10.65 -38.83 -0.41 -3.57 16 8 C 0.24 3.50 7.90 -155.42 -1.23 2.27 16 9 N -0.46 -5.45 10.48 -12.22 -0.13 -5.57 16 10 C 0.18 1.27 11.27 -17.06 -0.19 1.07 16 11 C -0.23 -1.27 10.05 -39.78 -0.40 -1.67 16 12 C 0.16 1.39 11.30 -16.39 -0.19 1.21 16 13 N -0.31 -4.12 3.90 -12.20 -0.05 -4.17 16 14 N -0.27 -4.35 12.34 33.23 0.41 -3.94 16 15 C -0.15 -2.64 5.99 -24.89 -0.15 -2.79 16 16 C 0.18 4.28 5.36 -3.06 -0.02 4.26 16 17 N -0.60 -15.83 3.39 -170.08 -0.58 -16.40 16 18 C -0.22 -6.42 10.28 -15.06 -0.15 -6.58 16 19 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 20 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 21 N -0.92 -27.44 10.31 55.49 0.57 -26.87 16 22 Si 0.91 22.85 29.55 -169.99 -5.02 17.83 16 23 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 C 0.13 2.93 6.11 -2.53 -0.02 2.91 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.94 8.13 -51.93 -0.42 0.52 16 29 H 0.07 1.20 6.45 -51.93 -0.34 0.87 16 30 H 0.41 6.85 8.17 -40.82 -0.33 6.52 16 31 H 0.17 2.57 8.06 -52.49 -0.42 2.15 16 32 H 0.18 0.53 8.06 -52.49 -0.42 0.11 16 33 H 0.17 0.24 8.06 -52.49 -0.42 -0.19 16 34 H 0.18 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.07 1.26 8.04 -51.93 -0.42 0.84 16 36 H 0.06 1.03 8.05 -51.93 -0.42 0.61 16 37 H 0.05 1.21 7.38 -51.93 -0.38 0.82 16 38 H 0.04 1.18 7.51 -51.93 -0.39 0.79 16 39 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.06 1.36 6.31 -51.93 -0.33 1.04 16 41 H 0.03 0.62 8.03 -51.93 -0.42 0.20 16 LS Contribution 342.82 15.07 5.17 5.17 Total: -1.00 -35.82 342.82 -8.21 -44.03 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -5.10 Total: 3.48 kcal Atomic # 6 Polarization: 12.68 SS G_CDS: -3.31 Total: 9.36 kcal Atomic # 7 Polarization: -69.37 SS G_CDS: -0.01 Total: -69.39 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.07 Total: -10.49 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.82 -8.21 -44.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046721932.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.903 kcal (2) G-P(sol) polarization free energy of solvation -35.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds