Wall clock time and date at job start Tue Mar 31 2020 10:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 N 1.46504 * 110.88987 * 2 1 4 4 C 1.34773 * 119.99861 * 62.42607 * 3 2 1 5 5 O 1.21546 * 120.00023 * 0.02562 * 4 3 2 6 6 C 1.47886 * 119.99925 * 180.02562 * 4 3 2 7 7 C 1.39898 * 125.69443 * 180.02562 * 6 4 3 8 8 C 1.38581 * 107.58980 * 180.28533 * 7 6 4 9 9 N 1.34119 * 132.33432 * 180.48349 * 8 7 6 10 10 C 1.31128 * 120.83924 * 179.64187 * 9 8 7 11 11 C 1.40349 * 120.29797 * 359.64384 * 10 9 8 12 12 C 1.35451 * 119.46490 * 0.03204 * 11 10 9 13 13 N 1.36675 * 119.14042 * 359.97438 * 12 11 10 14 14 N 1.32377 * 125.69134 * 0.02562 * 6 4 3 15 15 C 1.55157 * 111.03729 * 236.09538 * 2 1 3 16 16 C 1.54328 * 102.94319 * 206.41019 * 15 2 1 17 17 N 1.47020 * 107.27050 * 22.19505 * 16 15 2 18 18 C 1.36936 * 125.64897 * 181.02703 * 17 16 15 19 19 H 1.07996 * 120.00244 * 180.02562 * 18 17 16 20 20 C 1.38814 * 119.99619 * 0.03558 * 18 17 16 21 21 N 1.31618 * 120.00586 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99753 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47083 * 59.99797 * 22 20 18 24 24 H 1.48502 * 109.47294 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47143 * 299.99776 * 22 20 18 26 26 C 1.47419 * 108.70402 * 1.05626 * 17 16 15 27 27 H 1.09001 * 109.47280 * 60.69824 * 1 2 3 28 28 H 1.08993 * 109.47712 * 180.70487 * 1 2 3 29 29 H 1.09004 * 109.46965 * 300.70251 * 1 2 3 30 30 H 0.97006 * 119.99795 * 242.42519 * 3 2 1 31 31 H 1.08002 * 126.20106 * 0.02562 * 7 6 4 32 32 H 1.07998 * 119.85018 * 179.67833 * 10 9 8 33 33 H 1.07997 * 120.26369 * 180.02562 * 11 10 9 34 34 H 1.08001 * 120.42894 * 179.97438 * 12 11 10 35 35 H 1.09007 * 110.71806 * 324.77013 * 15 2 1 36 36 H 1.08993 * 110.72425 * 88.04631 * 15 2 1 37 37 H 1.08999 * 109.88196 * 262.77353 * 16 15 2 38 38 H 1.09000 * 109.88045 * 141.60854 * 16 15 2 39 39 H 0.96995 * 120.00020 * 180.02562 * 21 20 18 40 40 H 1.09004 * 110.36847 * 217.04069 * 26 17 16 41 41 H 1.08993 * 110.46230 * 94.76253 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.7878 2.1909 1.0346 5 8 1.1163 1.7967 1.9679 6 6 2.3146 3.5728 1.0344 7 6 2.1147 4.5227 2.0417 8 6 2.7645 5.6846 1.6566 9 7 2.8989 6.8820 2.2456 10 6 3.5835 7.8411 1.6703 11 6 4.1956 7.6257 0.4258 12 6 4.0731 6.4190 -0.1770 13 7 3.3544 5.4354 0.4426 14 7 3.0541 4.1172 0.0809 15 6 2.0869 -0.8078 -1.2019 16 6 3.4683 -1.2733 -0.6952 17 7 3.4274 -1.2421 0.7741 18 6 4.4641 -1.5650 1.6084 19 1 4.3330 -1.5102 2.6790 20 6 5.6837 -1.9627 1.0780 21 7 5.8435 -2.0299 -0.2268 22 14 7.0979 -2.4040 2.2160 23 1 6.6976 -3.5391 3.0858 24 1 8.2813 -2.7925 1.4074 25 1 7.4391 -1.2304 3.0595 26 6 2.0852 -0.8062 1.2006 27 1 -0.3634 0.5029 -0.8962 28 1 -0.3634 -1.0275 0.0126 29 1 -0.3633 0.5247 0.8837 30 1 2.5886 1.6832 -0.7447 31 1 1.5521 4.3782 2.9522 32 1 3.6772 8.8008 2.1566 33 1 4.7596 8.4159 -0.0473 34 1 4.5373 6.2364 -1.1349 35 1 1.4480 -1.6635 -1.4207 36 1 2.1929 -0.1700 -2.0794 37 1 4.2432 -0.5986 -1.0589 38 1 3.6664 -2.2885 -1.0390 39 1 6.6957 -2.3081 -0.5973 40 1 2.1553 -0.1713 2.0839 41 1 1.4511 -1.6691 1.4039 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046721932.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:05 Heat of formation + Delta-G solvation = 95.841318 kcal Electronic energy + Delta-G solvation = -26108.554389 eV Core-core repulsion = 22411.854547 eV Total energy + Delta-G solvation = -3696.699842 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.144 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.42007 -41.31848 -39.31705 -38.51945 -35.76097 -35.10317 -33.81766 -32.40139 -31.45908 -30.36543 -30.25970 -27.54053 -26.54828 -25.42369 -24.98425 -23.68119 -22.27657 -21.49891 -20.57519 -19.51747 -18.97800 -18.71687 -17.60802 -17.28987 -17.10732 -16.69788 -16.59333 -16.09279 -15.68156 -15.58598 -15.30142 -14.97669 -14.55264 -14.22534 -13.91217 -13.85291 -13.70442 -13.56698 -13.40577 -13.12210 -12.85688 -12.77016 -12.50614 -12.35935 -12.19067 -12.08071 -12.03510 -11.73352 -11.62558 -11.05016 -10.93803 -10.72366 -10.65182 -10.11223 -9.14103 -8.88183 -7.87325 -5.21061 -0.52373 -0.33950 0.69942 0.86710 1.40507 1.43760 1.50128 1.92167 2.17977 2.39669 2.46415 2.82159 2.87760 3.30544 3.51041 3.56498 3.67554 3.78210 4.00947 4.01733 4.16141 4.21126 4.36048 4.49933 4.61322 4.62236 4.67691 4.74248 4.86007 4.91944 5.01819 5.04587 5.06589 5.07823 5.32029 5.37864 5.40667 5.56351 5.65274 5.74536 6.01700 6.18385 6.46119 6.55567 7.03216 7.10065 7.75726 8.40025 9.22392 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.012856 B = 0.003997 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.507170 B = 7004.277238 C = 8187.342154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.162 3.838 3 N -0.680 5.680 4 C 0.599 3.401 5 O -0.545 6.545 6 C 0.061 3.939 7 C -0.236 4.236 8 C 0.247 3.753 9 N -0.493 5.493 10 C 0.189 3.811 11 C -0.187 4.187 12 C 0.132 3.868 13 N -0.308 5.308 14 N -0.297 5.297 15 C -0.127 4.127 16 C 0.185 3.815 17 N -0.621 5.621 18 C -0.245 4.245 19 H 0.068 0.932 20 C -0.058 4.058 21 N -0.945 5.945 22 Si 0.974 3.026 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.285 1.285 26 C 0.127 3.873 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.057 0.943 30 H 0.409 0.591 31 H 0.164 0.836 32 H 0.230 0.770 33 H 0.226 0.774 34 H 0.210 0.790 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.013 0.987 38 H 0.012 0.988 39 H 0.248 0.752 40 H 0.031 0.969 41 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.789 22.731 -4.812 23.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.076 3.924 3 N -0.330 5.330 4 C 0.382 3.618 5 O -0.422 6.422 6 C -0.097 4.097 7 C -0.268 4.268 8 C 0.019 3.981 9 N -0.206 5.206 10 C 0.006 3.994 11 C -0.210 4.210 12 C 0.000 4.000 13 N -0.081 5.081 14 N -0.128 5.128 15 C -0.165 4.165 16 C 0.060 3.940 17 N -0.348 5.348 18 C -0.374 4.374 19 H 0.086 0.914 20 C -0.252 4.252 21 N -0.594 5.594 22 Si 0.802 3.198 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.211 1.211 26 C 0.001 3.999 27 H 0.096 0.904 28 H 0.101 0.899 29 H 0.076 0.924 30 H 0.245 0.755 31 H 0.182 0.818 32 H 0.246 0.754 33 H 0.242 0.758 34 H 0.227 0.773 35 H 0.118 0.882 36 H 0.113 0.887 37 H 0.031 0.969 38 H 0.031 0.969 39 H 0.057 0.943 40 H 0.049 0.951 41 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -6.042 21.905 -4.493 23.163 hybrid contribution 1.348 -0.518 0.440 1.509 sum -4.695 21.387 -4.053 22.268 Atomic orbital electron populations 1.21933 0.91241 1.03666 1.03006 1.21554 0.94595 0.79879 0.96411 1.45695 1.53036 1.12281 1.21958 1.17003 0.79749 0.82539 0.82530 1.90734 1.40237 1.75530 1.35668 1.21991 0.97968 0.95478 0.94254 1.20979 1.11981 0.90130 1.03713 1.20572 0.97392 0.94637 0.85480 1.68371 1.20656 0.98223 1.33358 1.24498 0.85464 0.97960 0.91496 1.22579 1.04000 0.97158 0.97279 1.23071 0.91288 0.85349 1.00283 1.47399 1.34302 1.10222 1.16220 1.78018 1.23175 0.88858 1.22729 1.23118 0.96941 1.00077 0.96383 1.20944 0.92847 0.97471 0.82695 1.44679 1.08561 1.78884 1.02645 1.19310 0.90833 1.37951 0.89334 0.91378 1.25526 0.99884 1.02229 0.97540 1.70141 1.24297 1.54456 1.10473 0.85235 0.78786 0.78035 0.77764 1.20281 1.21251 1.21125 1.22023 0.86410 0.95274 0.96233 0.90365 0.89852 0.92385 0.75481 0.81798 0.75384 0.75784 0.77315 0.88197 0.88661 0.96852 0.96933 0.94300 0.95070 0.94833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.14 8.62 71.98 0.62 -3.52 16 2 C 0.16 5.93 0.82 4.99 0.00 5.93 16 3 N -0.68 -25.02 5.17 -419.45 -2.17 -27.19 16 4 C 0.60 23.54 7.22 86.80 0.63 24.16 16 5 O -0.55 -23.72 13.65 -3.86 -0.05 -23.77 16 6 C 0.06 2.22 7.05 42.02 0.30 2.51 16 7 C -0.24 -8.05 10.65 22.75 0.24 -7.81 16 8 C 0.25 7.11 7.90 133.00 1.05 8.16 16 9 N -0.49 -10.97 10.48 -192.58 -2.02 -12.99 16 10 C 0.19 1.87 11.27 85.31 0.96 2.83 16 11 C -0.19 -1.09 10.05 22.14 0.22 -0.87 16 12 C 0.13 1.81 11.30 83.29 0.94 2.75 16 13 N -0.31 -8.06 3.90 -192.50 -0.75 -8.81 16 14 N -0.30 -9.74 12.34 -48.78 -0.60 -10.35 16 15 C -0.13 -4.48 5.99 31.78 0.19 -4.29 16 16 C 0.19 9.20 5.36 86.73 0.47 9.66 16 17 N -0.62 -33.89 3.39 -692.00 -2.35 -36.24 16 18 C -0.25 -14.76 10.28 84.03 0.86 -13.90 16 19 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 20 C -0.06 -3.47 5.49 84.86 0.47 -3.00 16 21 N -0.94 -57.73 10.31 21.65 0.22 -57.50 16 22 Si 0.97 47.98 29.55 68.60 2.03 50.01 16 23 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 24 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 25 H -0.28 -13.84 7.11 99.48 0.71 -13.14 16 26 C 0.13 5.88 6.11 86.86 0.53 6.41 16 27 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.08 2.18 8.13 -2.39 -0.02 2.16 16 29 H 0.06 1.92 6.45 -2.38 -0.02 1.90 16 30 H 0.41 14.18 8.17 -92.70 -0.76 13.42 16 31 H 0.16 5.49 8.06 -2.91 -0.02 5.47 16 32 H 0.23 -0.10 8.06 -2.91 -0.02 -0.13 16 33 H 0.23 -1.18 8.06 -2.91 -0.02 -1.21 16 34 H 0.21 1.49 8.06 -2.91 -0.02 1.46 16 35 H 0.10 3.09 8.04 -2.38 -0.02 3.07 16 36 H 0.09 2.82 8.05 -2.39 -0.02 2.80 16 37 H 0.01 0.73 7.38 -2.39 -0.02 0.72 16 38 H 0.01 0.69 7.51 -2.39 -0.02 0.67 16 39 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 40 H 0.03 1.59 6.31 -2.38 -0.02 1.58 16 41 H 0.03 1.52 8.03 -2.39 -0.02 1.50 16 Total: -1.00 -85.39 342.82 2.10 -83.29 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.31 Total: 14.52 kcal Atomic # 6 Polarization: 21.55 SS G_CDS: 7.48 Total: 29.03 kcal Atomic # 7 Polarization: -145.41 SS G_CDS: -7.67 Total: -153.08 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.05 Total: -23.77 kcal Atomic # 14 Polarization: 47.98 SS G_CDS: 2.03 Total: 50.01 kcal Total: -85.39 2.10 -83.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046721932.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.128 kcal (2) G-P(sol) polarization free energy of solvation -85.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds