Wall clock time and date at job start Tue Mar 31 2020 10:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47336 * 2 1 4 4 C 1.50702 * 109.46988 * 179.97438 * 3 2 1 5 5 C 1.33392 * 125.20412 * 89.71731 * 4 3 2 6 6 C 1.38421 * 114.92285 * 179.86042 * 5 4 3 7 7 C 1.33395 * 114.91865 * 0.42393 * 6 5 4 8 8 C 1.50697 * 125.20084 * 179.79279 * 7 6 5 9 9 N 1.46499 * 109.47341 * 85.71859 * 8 7 6 10 10 C 1.36935 * 119.99800 * 93.89629 * 9 8 7 11 11 H 1.08003 * 120.00189 * 32.94473 * 10 9 8 12 12 C 1.38818 * 119.99903 * 212.93569 * 10 9 8 13 13 N 1.31620 * 120.00012 * 23.77313 * 12 10 9 14 14 Si 1.86798 * 120.00046 * 203.77677 * 12 10 9 15 15 H 1.48505 * 109.46913 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47593 * 119.99906 * 14 12 10 17 17 H 1.48498 * 109.46926 * 240.00287 * 14 12 10 18 18 C 1.46499 * 119.99904 * 273.90384 * 9 8 7 19 19 C 1.50697 * 109.47038 * 275.58407 * 18 9 8 20 20 C 1.38235 * 120.00197 * 274.52132 * 19 18 9 21 21 C 1.38230 * 120.00210 * 179.76670 * 20 19 18 22 22 C 1.38240 * 119.99788 * 0.48542 * 21 20 19 23 23 C 1.38237 * 120.00010 * 359.78684 * 22 21 20 24 24 C 1.38233 * 119.99660 * 359.96248 * 23 22 21 25 25 S 1.75877 * 125.20364 * 270.01947 * 4 3 2 26 26 H 1.09002 * 109.47099 * 300.00717 * 1 2 3 27 27 H 1.08993 * 109.47125 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46968 * 59.99733 * 1 2 3 29 29 H 1.09001 * 109.46970 * 119.99478 * 2 1 3 30 30 H 1.08993 * 109.47301 * 239.99141 * 2 1 3 31 31 H 1.08999 * 109.46918 * 299.99197 * 3 2 1 32 32 H 1.08993 * 109.47627 * 59.99341 * 3 2 1 33 33 H 1.08006 * 122.53793 * 0.02562 * 5 4 3 34 34 H 1.07996 * 122.54137 * 180.20030 * 6 5 4 35 35 H 1.08998 * 109.47038 * 205.71712 * 8 7 6 36 36 H 1.08999 * 109.47475 * 325.71314 * 8 7 6 37 37 H 0.97000 * 119.99957 * 180.02562 * 13 12 10 38 38 H 1.09006 * 109.47186 * 35.58400 * 18 9 8 39 39 H 1.08994 * 109.47305 * 155.58421 * 18 9 8 40 40 H 1.08001 * 119.99490 * 359.97438 * 20 19 18 41 41 H 1.07997 * 120.00159 * 180.25668 * 21 20 19 42 42 H 1.07997 * 119.99598 * 179.77031 * 22 21 20 43 43 H 1.08003 * 119.99882 * 179.97438 * 23 22 21 44 44 H 1.08011 * 119.99518 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4424 0.0006 5 6 4.3165 1.4368 -1.0890 6 6 5.6784 1.4410 -0.8414 7 6 6.0150 1.4411 0.4494 8 6 7.4257 1.4408 0.9793 9 7 7.9195 2.8180 1.0543 10 6 7.8058 3.5234 2.2225 11 1 7.8734 3.0116 3.1712 12 6 7.6039 4.8964 2.1874 13 7 7.0660 5.4555 1.1242 14 14 8.0957 5.9504 3.6491 15 1 8.6734 5.0868 4.7101 16 1 9.1055 6.9512 3.2204 17 1 6.8985 6.6510 4.1792 18 6 8.5347 3.4406 -0.1204 19 6 9.9918 3.0615 -0.1847 20 6 10.9287 3.7954 0.5185 21 6 12.2646 3.4447 0.4635 22 6 12.6650 2.3661 -0.3029 23 6 11.7289 1.6355 -1.0106 24 6 10.3923 1.9832 -0.9513 25 16 4.5604 1.4420 1.4382 26 1 -0.3633 0.5140 0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5139 -0.8898 31 1 1.6768 1.9562 -0.8901 32 1 1.6767 1.9564 0.8898 33 1 3.9079 1.4321 -2.0887 34 1 6.4128 1.4405 -1.6332 35 1 7.4402 0.9950 1.9738 36 1 8.0643 0.8617 0.3123 37 1 6.9252 6.4149 1.0996 38 1 8.0291 3.0943 -1.0219 39 1 8.4442 4.5243 -0.0467 40 1 10.6164 4.6408 1.1137 41 1 12.9960 4.0156 1.0162 42 1 13.7093 2.0944 -0.3488 43 1 12.0418 0.7931 -1.6097 44 1 9.6609 1.4126 -1.5047 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138525954.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:01 Heat of formation + Delta-G solvation = 59.744997 kcal Electronic energy + Delta-G solvation = -23366.261604 eV Core-core repulsion = 20181.996971 eV Total energy + Delta-G solvation = -3184.264633 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.135 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -38.64299 -37.55746 -35.82021 -34.52038 -31.79683 -31.17204 -30.26389 -29.49616 -27.21805 -25.63897 -24.35315 -22.64457 -21.91095 -21.54541 -21.16687 -20.15782 -18.19917 -16.90843 -16.29262 -15.95706 -15.10937 -14.74708 -14.61089 -14.49223 -14.29443 -13.89918 -13.55207 -13.54189 -13.13256 -12.81810 -12.65501 -12.40074 -12.16378 -11.88545 -11.80001 -11.65555 -11.26001 -11.20429 -11.07375 -10.87758 -10.71663 -10.67364 -10.57604 -10.47297 -10.19056 -10.05774 -9.92981 -9.90410 -8.62302 -8.32516 -8.06655 -7.71688 -7.65774 -6.80929 -5.93222 -3.40776 1.74434 1.99658 2.04147 2.41123 2.84309 3.28854 3.39041 3.41082 3.49257 4.35997 4.46856 4.97316 5.04479 5.14807 5.21248 5.42639 5.46727 5.55674 5.57290 5.63673 5.65078 5.75113 5.81002 5.85776 5.87971 5.99342 6.06858 6.13967 6.18024 6.19940 6.31897 6.32439 6.37865 6.47747 6.51823 6.69742 6.77002 6.90457 7.03861 7.06811 7.12617 7.30773 7.40384 7.57092 7.69247 7.71059 8.34686 9.02312 9.64921 10.20933 11.08077 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013513 B = 0.004114 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.591824 B = 6804.531109 C = 8368.775738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.041 4.041 4 C -0.209 4.209 5 C -0.126 4.126 6 C -0.166 4.166 7 C -0.139 4.139 8 C 0.202 3.798 9 N -0.558 5.558 10 C -0.256 4.256 11 H 0.066 0.934 12 C 0.015 3.985 13 N -0.874 5.874 14 Si 0.892 3.108 15 H -0.274 1.274 16 H -0.286 1.286 17 H -0.288 1.288 18 C 0.174 3.826 19 C -0.072 4.072 20 C -0.097 4.097 21 C -0.128 4.128 22 C -0.143 4.143 23 C -0.129 4.129 24 C -0.125 4.125 25 S 0.093 5.907 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.256 0.744 38 H 0.034 0.966 39 H 0.109 0.891 40 H 0.119 0.881 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.429 -8.368 -4.175 9.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.080 4.080 4 C -0.327 4.327 5 C -0.157 4.157 6 C -0.196 4.196 7 C -0.260 4.260 8 C 0.074 3.926 9 N -0.275 5.275 10 C -0.386 4.386 11 H 0.083 0.917 12 C -0.186 4.186 13 N -0.515 5.515 14 Si 0.721 3.279 15 H -0.199 1.199 16 H -0.212 1.212 17 H -0.215 1.215 18 C 0.048 3.952 19 C -0.074 4.074 20 C -0.116 4.116 21 C -0.146 4.146 22 C -0.162 4.162 23 C -0.147 4.147 24 C -0.143 4.143 25 S 0.357 5.643 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.052 0.948 39 H 0.127 0.873 40 H 0.137 0.863 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.127 0.873 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.756 -8.174 -2.623 9.016 hybrid contribution 0.511 0.819 -0.888 1.312 sum -2.245 -7.355 -3.511 8.453 Atomic orbital electron populations 1.21789 0.96006 1.01398 1.01740 1.21544 0.95165 0.96531 1.02388 1.20028 0.88699 0.96853 1.02418 1.24204 0.98627 1.13285 0.96549 1.19864 0.93229 1.04458 0.98185 1.19780 0.95448 1.08406 0.95948 1.25956 1.00037 1.03896 0.96158 1.19697 0.85641 0.88854 0.98433 1.43965 1.62602 1.10403 1.10484 1.19150 1.44429 0.89838 0.85142 0.91656 1.25081 0.98115 0.98338 0.97085 1.70037 1.41126 1.10791 1.29570 0.86398 0.78283 0.80558 0.82708 1.19881 1.21212 1.21509 1.20070 0.84389 1.02345 0.88404 1.21203 0.98994 0.93719 0.93525 1.21115 0.92179 0.99983 0.98339 1.21095 0.96206 0.97653 0.99629 1.20903 0.98620 0.97141 0.99487 1.20985 0.93647 0.99761 1.00338 1.21062 0.95311 0.97693 1.00280 1.84064 0.97411 1.72853 1.09964 0.92776 0.92873 0.92810 0.91909 0.91889 0.90963 0.91437 0.86010 0.85796 0.92515 0.92504 0.93349 0.94752 0.87329 0.86254 0.87154 0.87346 0.87276 0.87112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.91 37.16 0.37 -1.06 16 2 C -0.12 -1.36 5.92 -26.73 -0.16 -1.52 16 3 C -0.04 -0.55 5.71 -27.88 -0.16 -0.71 16 4 C -0.21 -3.55 5.76 -36.00 -0.21 -3.76 16 5 C -0.13 -2.18 10.05 -41.21 -0.41 -2.60 16 6 C -0.17 -3.12 9.96 -41.21 -0.41 -3.53 16 7 C -0.14 -2.79 6.09 -36.00 -0.22 -3.01 16 8 C 0.20 4.15 6.18 -5.20 -0.03 4.12 16 9 N -0.56 -13.01 2.43 -175.99 -0.43 -13.44 16 10 C -0.26 -6.57 9.47 -15.06 -0.14 -6.72 16 11 H 0.07 1.71 7.93 -52.48 -0.42 1.29 16 12 C 0.02 0.40 4.89 -17.43 -0.09 0.31 16 13 N -0.87 -23.93 11.37 55.49 0.63 -23.30 16 14 Si 0.89 20.74 29.62 -169.99 -5.03 15.70 16 15 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 16 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 C 0.17 3.90 5.39 -5.20 -0.03 3.87 16 19 C -0.07 -1.43 5.45 -104.63 -0.57 -2.00 16 20 C -0.10 -1.91 9.72 -39.59 -0.38 -2.30 16 21 C -0.13 -2.15 10.05 -39.58 -0.40 -2.55 16 22 C -0.14 -2.21 10.05 -39.58 -0.40 -2.60 16 23 C -0.13 -2.02 10.05 -39.58 -0.40 -2.41 16 24 C -0.12 -2.18 9.58 -39.59 -0.38 -2.55 16 25 S 0.09 1.77 23.31 -107.50 -2.51 -0.74 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.12 1.83 8.06 -52.48 -0.42 1.40 16 34 H 0.12 2.19 8.03 -52.49 -0.42 1.77 16 35 H 0.06 1.16 8.01 -51.93 -0.42 0.74 16 36 H 0.06 1.07 8.00 -51.93 -0.42 0.66 16 37 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 38 H 0.03 0.75 7.90 -51.93 -0.41 0.34 16 39 H 0.11 2.77 5.31 -51.93 -0.28 2.50 16 40 H 0.12 2.50 8.06 -52.49 -0.42 2.07 16 41 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 42 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 43 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 44 H 0.11 1.78 8.06 -52.48 -0.42 1.35 16 LS Contribution 381.10 15.07 5.74 5.74 Total: -1.00 -27.55 381.10 -12.60 -40.15 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -6.99 Total: 4.91 kcal Atomic # 6 Polarization: -25.00 SS G_CDS: -4.02 Total: -29.02 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: 0.20 Total: -36.74 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.70 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -2.51 Total: -0.74 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -27.55 -12.60 -40.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138525954.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.892 kcal (2) G-P(sol) polarization free energy of solvation -27.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds