Wall clock time and date at job start Tue Mar 31 2020 10:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47336 * 2 1 4 4 C 1.50702 * 109.46988 * 179.97438 * 3 2 1 5 5 C 1.33392 * 125.20412 * 89.71731 * 4 3 2 6 6 C 1.38421 * 114.92285 * 179.86042 * 5 4 3 7 7 C 1.33395 * 114.91865 * 0.42393 * 6 5 4 8 8 C 1.50697 * 125.20084 * 179.79279 * 7 6 5 9 9 N 1.46499 * 109.47341 * 85.71859 * 8 7 6 10 10 C 1.36935 * 119.99800 * 93.89629 * 9 8 7 11 11 H 1.08003 * 120.00189 * 32.94473 * 10 9 8 12 12 C 1.38818 * 119.99903 * 212.93569 * 10 9 8 13 13 N 1.31620 * 120.00012 * 23.77313 * 12 10 9 14 14 Si 1.86798 * 120.00046 * 203.77677 * 12 10 9 15 15 H 1.48505 * 109.46913 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47593 * 119.99906 * 14 12 10 17 17 H 1.48498 * 109.46926 * 240.00287 * 14 12 10 18 18 C 1.46499 * 119.99904 * 273.90384 * 9 8 7 19 19 C 1.50697 * 109.47038 * 275.58407 * 18 9 8 20 20 C 1.38235 * 120.00197 * 274.52132 * 19 18 9 21 21 C 1.38230 * 120.00210 * 179.76670 * 20 19 18 22 22 C 1.38240 * 119.99788 * 0.48542 * 21 20 19 23 23 C 1.38237 * 120.00010 * 359.78684 * 22 21 20 24 24 C 1.38233 * 119.99660 * 359.96248 * 23 22 21 25 25 S 1.75877 * 125.20364 * 270.01947 * 4 3 2 26 26 H 1.09002 * 109.47099 * 300.00717 * 1 2 3 27 27 H 1.08993 * 109.47125 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46968 * 59.99733 * 1 2 3 29 29 H 1.09001 * 109.46970 * 119.99478 * 2 1 3 30 30 H 1.08993 * 109.47301 * 239.99141 * 2 1 3 31 31 H 1.08999 * 109.46918 * 299.99197 * 3 2 1 32 32 H 1.08993 * 109.47627 * 59.99341 * 3 2 1 33 33 H 1.08006 * 122.53793 * 0.02562 * 5 4 3 34 34 H 1.07996 * 122.54137 * 180.20030 * 6 5 4 35 35 H 1.08998 * 109.47038 * 205.71712 * 8 7 6 36 36 H 1.08999 * 109.47475 * 325.71314 * 8 7 6 37 37 H 0.97000 * 119.99957 * 180.02562 * 13 12 10 38 38 H 1.09006 * 109.47186 * 35.58400 * 18 9 8 39 39 H 1.08994 * 109.47305 * 155.58421 * 18 9 8 40 40 H 1.08001 * 119.99490 * 359.97438 * 20 19 18 41 41 H 1.07997 * 120.00159 * 180.25668 * 21 20 19 42 42 H 1.07997 * 119.99598 * 179.77031 * 22 21 20 43 43 H 1.08003 * 119.99882 * 179.97438 * 23 22 21 44 44 H 1.08011 * 119.99518 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4424 0.0006 5 6 4.3165 1.4368 -1.0890 6 6 5.6784 1.4410 -0.8414 7 6 6.0150 1.4411 0.4494 8 6 7.4257 1.4408 0.9793 9 7 7.9195 2.8180 1.0543 10 6 7.8058 3.5234 2.2225 11 1 7.8734 3.0116 3.1712 12 6 7.6039 4.8964 2.1874 13 7 7.0660 5.4555 1.1242 14 14 8.0957 5.9504 3.6491 15 1 8.6734 5.0868 4.7101 16 1 9.1055 6.9512 3.2204 17 1 6.8985 6.6510 4.1792 18 6 8.5347 3.4406 -0.1204 19 6 9.9918 3.0615 -0.1847 20 6 10.9287 3.7954 0.5185 21 6 12.2646 3.4447 0.4635 22 6 12.6650 2.3661 -0.3029 23 6 11.7289 1.6355 -1.0106 24 6 10.3923 1.9832 -0.9513 25 16 4.5604 1.4420 1.4382 26 1 -0.3633 0.5140 0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5139 -0.8898 31 1 1.6768 1.9562 -0.8901 32 1 1.6767 1.9564 0.8898 33 1 3.9079 1.4321 -2.0887 34 1 6.4128 1.4405 -1.6332 35 1 7.4402 0.9950 1.9738 36 1 8.0643 0.8617 0.3123 37 1 6.9252 6.4149 1.0996 38 1 8.0291 3.0943 -1.0219 39 1 8.4442 4.5243 -0.0467 40 1 10.6164 4.6408 1.1137 41 1 12.9960 4.0156 1.0162 42 1 13.7093 2.0944 -0.3488 43 1 12.0418 0.7931 -1.6097 44 1 9.6609 1.4126 -1.5047 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138525954.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:00 Heat of formation + Delta-G solvation = 50.382513 kcal Electronic energy + Delta-G solvation = -23366.667592 eV Core-core repulsion = 20181.996971 eV Total energy + Delta-G solvation = -3184.670621 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.135 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.06033 -38.96809 -37.40374 -35.70621 -33.63091 -32.59202 -31.60989 -30.88322 -28.60976 -27.37494 -25.80909 -24.06687 -23.30225 -23.00453 -22.23922 -21.71233 -19.66243 -18.69886 -17.75179 -17.31796 -16.81458 -16.14356 -15.98053 -15.82936 -15.72823 -15.54107 -15.24527 -14.57499 -14.45333 -14.14371 -14.00534 -13.66100 -13.55783 -13.46175 -13.14176 -13.11177 -12.85407 -12.65025 -12.44628 -12.28824 -12.26804 -12.10590 -11.94051 -11.84545 -11.72272 -11.60023 -11.56636 -11.34575 -10.57025 -9.66761 -9.47238 -9.18613 -9.16157 -8.68984 -7.89498 -5.40329 0.29560 0.64781 0.67494 0.95420 1.36666 1.40140 1.45059 1.53500 2.03183 2.48656 3.02758 3.24137 3.89334 3.89676 4.11497 4.14291 4.20889 4.23247 4.28319 4.34479 4.43191 4.50476 4.54049 4.67876 4.69239 4.81094 4.83192 4.85291 4.91561 4.94193 4.99828 5.01633 5.22741 5.27379 5.31403 5.32670 5.44830 5.49386 5.58925 5.60741 5.67429 5.72763 5.78041 5.86344 6.03637 6.29613 6.42519 7.09470 7.77216 8.29656 9.09261 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013513 B = 0.004114 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.591824 B = 6804.531109 C = 8368.775738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.113 4.113 3 C -0.042 4.042 4 C -0.192 4.192 5 C -0.140 4.140 6 C -0.160 4.160 7 C -0.167 4.167 8 C 0.206 3.794 9 N -0.570 5.570 10 C -0.257 4.257 11 H 0.054 0.946 12 C -0.024 4.024 13 N -0.905 5.905 14 Si 0.942 3.058 15 H -0.270 1.270 16 H -0.286 1.286 17 H -0.293 1.293 18 C 0.184 3.816 19 C -0.093 4.093 20 C -0.124 4.124 21 C -0.130 4.130 22 C -0.134 4.134 23 C -0.122 4.122 24 C -0.129 4.129 25 S 0.060 5.940 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.150 0.850 34 H 0.134 0.866 35 H 0.050 0.950 36 H 0.072 0.928 37 H 0.251 0.749 38 H 0.030 0.970 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.132 0.868 42 H 0.147 0.853 43 H 0.146 0.854 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.928 -10.131 -5.462 11.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.151 4.151 3 C -0.081 4.081 4 C -0.310 4.310 5 C -0.171 4.171 6 C -0.191 4.191 7 C -0.288 4.288 8 C 0.079 3.921 9 N -0.287 5.287 10 C -0.387 4.387 11 H 0.072 0.928 12 C -0.222 4.222 13 N -0.548 5.548 14 Si 0.770 3.230 15 H -0.194 1.194 16 H -0.213 1.213 17 H -0.220 1.220 18 C 0.059 3.941 19 C -0.096 4.096 20 C -0.143 4.143 21 C -0.148 4.148 22 C -0.152 4.152 23 C -0.140 4.140 24 C -0.148 4.148 25 S 0.323 5.677 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.168 0.832 34 H 0.151 0.849 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.061 0.939 38 H 0.049 0.951 39 H 0.092 0.908 40 H 0.109 0.891 41 H 0.150 0.850 42 H 0.165 0.835 43 H 0.164 0.836 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.244 -9.960 -3.907 10.932 hybrid contribution 0.358 1.241 -0.568 1.411 sum -1.886 -8.719 -4.475 9.981 Atomic orbital electron populations 1.21760 0.94142 1.02406 1.02248 1.21493 0.96721 0.94729 1.02154 1.20191 0.86196 0.98623 1.03129 1.24666 1.00199 1.11057 0.95056 1.20146 0.92578 1.04709 0.99634 1.20067 0.96640 1.06713 0.95675 1.25796 0.99936 1.06241 0.96792 1.19623 0.86499 0.87491 0.98513 1.44021 1.63815 1.10915 1.09997 1.19191 1.43545 0.90243 0.85729 0.92830 1.25556 0.98643 0.99121 0.98894 1.70149 1.43064 1.10411 1.31170 0.85617 0.77582 0.79210 0.80590 1.19415 1.21264 1.21992 1.19781 0.86319 1.00171 0.87836 1.20957 0.97409 0.95548 0.95636 1.21034 0.93918 0.99991 0.99325 1.21343 0.95121 0.98404 0.99888 1.21358 1.00566 0.95665 0.97649 1.21402 0.92528 1.00284 0.99773 1.21201 0.96910 0.96871 0.99835 1.84116 0.98242 1.73534 1.11763 0.92675 0.91658 0.91932 0.92758 0.91561 0.89351 0.91541 0.83200 0.84875 0.93195 0.90975 0.93943 0.95143 0.90802 0.89082 0.85033 0.83542 0.83615 0.85957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.91 71.98 0.71 -1.69 16 2 C -0.11 -2.36 5.92 30.59 0.18 -2.18 16 3 C -0.04 -1.07 5.71 29.85 0.17 -0.90 16 4 C -0.19 -6.34 5.76 24.59 0.14 -6.19 16 5 C -0.14 -4.66 10.05 21.22 0.21 -4.45 16 6 C -0.16 -5.96 9.96 21.22 0.21 -5.75 16 7 C -0.17 -6.79 6.09 24.59 0.15 -6.64 16 8 C 0.21 8.67 6.18 85.63 0.53 9.20 16 9 N -0.57 -27.53 2.43 -710.70 -1.72 -29.26 16 10 C -0.26 -13.74 9.47 84.04 0.80 -12.95 16 11 H 0.05 2.93 7.93 -2.91 -0.02 2.91 16 12 C -0.02 -1.29 4.89 84.86 0.41 -0.88 16 13 N -0.90 -51.85 11.37 21.65 0.25 -51.60 16 14 Si 0.94 44.28 29.62 68.60 2.03 46.31 16 15 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 16 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 17 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 18 C 0.18 8.62 5.39 85.63 0.46 9.08 16 19 C -0.09 -3.77 5.45 -19.87 -0.11 -3.88 16 20 C -0.12 -4.97 9.72 22.27 0.22 -4.75 16 21 C -0.13 -4.16 10.05 22.27 0.22 -3.94 16 22 C -0.13 -3.65 10.05 22.27 0.22 -3.42 16 23 C -0.12 -3.37 10.05 22.27 0.22 -3.15 16 24 C -0.13 -4.33 9.58 22.27 0.21 -4.11 16 25 S 0.06 2.30 23.31 -56.49 -1.32 0.98 16 26 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.07 1.71 8.14 -2.39 -0.02 1.70 16 33 H 0.15 4.10 8.06 -2.91 -0.02 4.07 16 34 H 0.13 4.61 8.03 -2.91 -0.02 4.58 16 35 H 0.05 2.11 8.01 -2.39 -0.02 2.09 16 36 H 0.07 2.73 8.00 -2.39 -0.02 2.72 16 37 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 38 H 0.03 1.38 7.90 -2.38 -0.02 1.36 16 39 H 0.07 4.01 5.31 -2.39 -0.01 4.00 16 40 H 0.09 4.07 8.06 -2.91 -0.02 4.05 16 41 H 0.13 3.56 8.06 -2.91 -0.02 3.54 16 42 H 0.15 2.91 8.06 -2.91 -0.02 2.88 16 43 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 44 H 0.12 3.72 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -61.75 381.10 5.17 -56.58 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: 0.96 Total: 23.57 kcal Atomic # 6 Polarization: -51.57 SS G_CDS: 4.97 Total: -46.59 kcal Atomic # 7 Polarization: -79.38 SS G_CDS: -1.48 Total: -80.86 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -1.32 Total: 0.98 kcal Total: -61.75 5.17 -56.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138525954.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.965 kcal (2) G-P(sol) polarization free energy of solvation -61.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds